CmaCh08G006480 (gene) Cucurbita maxima (Rimu) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGATTTCGAGTCAGTGTTTACATAATCTTCTTCTGTCCCAAGAAATGATTCATCGAAATAAATAATGAGTCACCATCGATATCGACACATCTGAGATCGCCAAATATTCGGGAGTTCCTCTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTTTCTTTGTTTCTCGAGCCTATAGTGAGTTACAGACAGAGTGAGAAAAGGTCAAATCTTTATTGAGTTGCGAAAAGGATAGGTATCCCACATCTTCACTTCATTCTTTATGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGGGGTAGGGGGAGGGGTTTCCGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCTCTTATGGGGTCAAATCAATACGTTCGAAGAAGAAAGATTTGAATATCAATCTCACTCATAAGTATCATACCAAATTCCATCAATAGAATAGCTTTTTCGAGAAATACGAGACATTTAAGTCATACAAGTAAAGAGATATATTATTCATATAAGACAAAATGTGAACGGTTATTGGATTGATGAGAAAGAAAGAGAATTCTTGGTTCACCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTATTGGTTCTGACTCATAGTGAGAATTTCTCAAAGAATGACTCTGGTTGGTTATCAAATGATTGAACAACCGGGAGTAATTGACTTACGAGACTTAGTGGACATTCATCTTTAGCAGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAACCCTATCCCCGCGGGTATTTTAGTGATAGATTCTATAGGAACTGGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGGTATTTCTGAACAAGTTCCTGGATAACAAGCCTAAGGGTTTGATTATTGATTGATGATAGTGGCGAATGATAGTGACGATATCGACCGTGACCTTGAGGCTGAAGCTTCTAAGATGAATGCGCTATGGATATGA ATGAGATTTCGAGTCATCACCATCGATATCGACACATCTGAGATCGCCAAATATTCGGGAGTTCCTCTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTTTCTTTGTTTCTCGAGCCTATAGTATCCCACATCTTCACTTCATTCTTTATGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGGGGTAGGGGGAGGGGTTTCCGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCTCTTATGGGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAACCCTATCCCCGCGGGAACTGGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGAATGATAGTGACGATATCGACCGTGACCTTGAGGCTGAAGCTTCTAAGATGAATGCGCTATGGATATGA ATGAGATTTCGAGTCATCACCATCGATATCGACACATCTGAGATCGCCAAATATTCGGGAGTTCCTCTATTCATTCAATCCTTTTCCTTCTTCTTCTTGCTGTATATCTCGTTCGTACACATCTTTTCTTTGTTTCTCGAGCCTATAGTATCCCACATCTTCACTTCATTCTTTATGGTTAAAGAATCTCTTTCTAGTTGCTCTGGAACAATTAGGAGATTCTCTAGAAGAAATAGGGTAGGGGTAGGGGGAGGGGTTTCCGCTTCTGGTGGCAACATGCTATGGGGTGGCGGTCCCTCTTATGGGAAAGACAGACATTCCTTGCTCATTATCAGACAATCACTTATTCACAAACCTCGTGTGTGGCTAATAGTTTGTTTGAATTTCCCATCTCATGGAAAACCCTTTTCCCTCCGCTTAACCCTATCCCCGCGGGAACTGGACGATCCATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATCTTCCTTTCATTACAGTGGCGAATGATAGTGACGATATCGACCGTGACCTTGAGGCTGAAGCTTCTAAGATGAATGCGCTATGGATATGA MRFRVITIDIDTSEIAKYSGVPLFIQSFSFFFLLYISFVHIFSLFLEPIVSHIFTSFFMVKESLSSCSGTIRRFSRRNRVGVGGGVSASGGNMLWGGGPSYGKDRHSLLIIRQSLIHKPRVWLIVCLNFPSHGKPFSLRLTLSPRELDDPSYLVKYLATNSYLPFITVANDSDDIDRDLEAEASKMNALWI Homology
BLAST of CmaCh08G006480 vs. ExPASy Swiss-Prot
Match: A4GGE1 (Protein Ycf2 OS=Phaseolus vulgaris OX=3885 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 73.6 bits (179), Expect = 2.8e-12 Identity = 45/111 (40.54%), Postives = 55/111 (49.55%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2) HSP 1 Score: 70.9 bits (172), Expect = 1.8e-11 Identity = 45/87 (51.72%), Postives = 50/87 (57.47%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy Swiss-Prot
Match: A0A379 (Protein Ycf2 OS=Coffea arabica OX=13443 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 45/98 (45.92%), Postives = 50/98 (51.02%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.2e-10 Identity = 46/93 (49.46%), Postives = 52/93 (55.91%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1) HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10 Identity = 46/113 (40.71%), Postives = 54/113 (47.79%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy TrEMBL
Match: A0A7J6ENG8 (AAA domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_004494 PE=3 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.2e-13 Identity = 60/138 (43.48%), Postives = 73/138 (52.90%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy TrEMBL
Match: B9SHW9 (AAA domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0568360 PE=3 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 1.7e-12 Identity = 62/152 (40.79%), Postives = 73/152 (48.03%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy TrEMBL
Match: A0A2G2VDC7 (Protein Ycf2 OS=Capsicum baccatum OX=33114 GN=CQW23_27275 PE=3 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10 Identity = 54/118 (45.76%), Postives = 58/118 (49.15%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy TrEMBL
Match: A0A7S6QYT6 (Hypothetical chloroplast RF21 OS=Gentiana manshurica OX=683755 GN=ycf2 PE=4 SV=1) HSP 1 Score: 75.1 bits (183), Expect = 3.6e-10 Identity = 50/116 (43.10%), Postives = 58/116 (50.00%), Query Frame = 0
BLAST of CmaCh08G006480 vs. ExPASy TrEMBL
Match: A0A2U8U5P8 (Protein Ycf2 OS=Banisteriopsis caapi OX=577683 GN=ycf2 PE=3 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 4.6e-10 Identity = 49/117 (41.88%), Postives = 59/117 (50.43%), Query Frame = 0
BLAST of CmaCh08G006480 vs. NCBI nr
Match: KAF4359987.1 (hypothetical protein F8388_004494 [Cannabis sativa]) HSP 1 Score: 86.7 bits (213), Expect = 2.4e-13 Identity = 60/138 (43.48%), Postives = 73/138 (52.90%), Query Frame = 0
BLAST of CmaCh08G006480 vs. NCBI nr
Match: EEF36790.1 (conserved hypothetical protein [Ricinus communis]) HSP 1 Score: 82.8 bits (203), Expect = 3.5e-12 Identity = 62/152 (40.79%), Postives = 73/152 (48.03%), Query Frame = 0
BLAST of CmaCh08G006480 vs. NCBI nr
Match: PHT30938.1 (Protein Ycf2 [Capsicum baccatum]) HSP 1 Score: 76.3 bits (186), Expect = 3.3e-10 Identity = 54/118 (45.76%), Postives = 58/118 (49.15%), Query Frame = 0
BLAST of CmaCh08G006480 vs. NCBI nr
Match: YP_010030731.1 (hypothetical chloroplast RF21 [Gentiana manshurica] >YP_010030750.1 hypothetical chloroplast RF21 [Gentiana manshurica] >QXI83755.1 hypothetical protein RF2 [Gentiana scabra] >QOV01632.1 hypothetical chloroplast RF21 [Gentiana manshurica] >QOV01633.1 hypothetical chloroplast RF21 [Gentiana manshurica] >QXI83774.1 hypothetical protein RF2 [Gentiana scabra] >QZJ46223.1 Ycf2 protein [Gentiana manshurica]) HSP 1 Score: 75.1 bits (183), Expect = 7.3e-10 Identity = 50/116 (43.10%), Postives = 58/116 (50.00%), Query Frame = 0
BLAST of CmaCh08G006480 vs. NCBI nr
Match: QZJ46394.1 (Ycf2 protein [Gentiana triflora] >QZJ46412.1 Ycf2 protein [Gentiana triflora]) HSP 1 Score: 75.1 bits (183), Expect = 7.3e-10 Identity = 50/116 (43.10%), Postives = 58/116 (50.00%), Query Frame = 0
BLAST of CmaCh08G006480 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 64.7 bits (156), Expect = 9.2e-11 Identity = 45/98 (45.92%), Postives = 51/98 (52.04%), Query Frame = 0
BLAST of CmaCh08G006480 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core ) HSP 1 Score: 64.7 bits (156), Expect = 9.2e-11 Identity = 45/98 (45.92%), Postives = 51/98 (52.04%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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