CmaCh08G006460 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G006460
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein Ycf2
Location	Cma_Chr08: 3764815 .. 3765566 (+)
RNA-Seq Expression	CmaCh08G006460
Synteny	CmaCh08G006460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATCTATTCACTCTATTAATAACCGAGCCAGATCTGGCGTATCATAAGGGATTTGCCTTGATTCCTACAGGTTGGATCAAAAAGAATTCTTTCATGAGGTATGAAAGGGATGAATCGAAAAGGATTTCTTGGTTCTACCTCCTCTTTTTTATGAAGAGAATGAATCGAAGGATCAGACAAAAATGGGTACGGCCCTCCCCCGGGAATGATTTGGAAGATCCAAAACAAAAAAGAGTGGTATTTGCTAGCAACAACATAATGGAAGCAGTCAATCAATCTATATTGATCCGAAATCAGATTCAAATCCAATATAAGTACATAAGTATTGAATCGATTCTTTGTTAATGAATAGATCCGATCCCAACTTAGAATATGGAATGAAAAGGGATCAAGAAAAAGGGTCAGAAGAAATGGTTCGATCCTCTTCCTCTTTTCTTTCTCGAACCGAGAGATCCATGAATCAGGATTCTAATGAAGCATATAGATACAAATGGTTCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAACAGAAGAGCCATTTTCAAGTAGTGTTCGATCGATTACGTATTAATCTATATTCGATGGATTGGTCTGAGGTTATCGAGAAAAAAGATTTGTCTAAGTCACTTCCTTTCTTTTTGTCCAAGTTTCTTCTACTTCTAACTCACTTCCTTTTTTCTTTGAGAGTTTTGGGAATATCCCCATTAATAGGCCCGAGATCCACATCTATGAATTGA

mRNA sequence

ATGGAAGATCTATTCACTCTATTAATAACCGAGCCAGATCTGGCGTATCATAAGGGATTTGCCTTGATTCCTACAGGTTGGATCAAAAAGAATTCTTTCATGAGATCCGATCCCAACTTAGAATATGGAATGAAAAGGGATCAAGAAAAAGGGTCAGAAGAAATGGTTCGATCCTCTTCCTCTTTTCTTTCTCGAACCGAGAGATCCATGAATCAGGATTCTAATGAAGCATATAGATACAAATGGTTCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAACAGAAGAGCCATTTTCAAGTAGTGTTCGATCGATTACGTATTAATCTATATTCGATGGATTGGTCTGAGGTTATCGAGAAAAAAGATTTGTCTAAGTCACTTCCTTTCTTTTTGTCCAAGTTTCTTCTACTTCTAACTCACTTCCTTTTTTCTTTGAGAGTTTTGGGAATATCCCCATTAATAGGCCCGAGATCCACATCTATGAATTGA

Coding sequence (CDS)

ATGGAAGATCTATTCACTCTATTAATAACCGAGCCAGATCTGGCGTATCATAAGGGATTTGCCTTGATTCCTACAGGTTGGATCAAAAAGAATTCTTTCATGAGATCCGATCCCAACTTAGAATATGGAATGAAAAGGGATCAAGAAAAAGGGTCAGAAGAAATGGTTCGATCCTCTTCCTCTTTTCTTTCTCGAACCGAGAGATCCATGAATCAGGATTCTAATGAAGCATATAGATACAAATGGTTCAATGGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAACAGAAGAGCCATTTTCAAGTAGTGTTCGATCGATTACGTATTAATCTATATTCGATGGATTGGTCTGAGGTTATCGAGAAAAAAGATTTGTCTAAGTCACTTCCTTTCTTTTTGTCCAAGTTTCTTCTACTTCTAACTCACTTCCTTTTTTCTTTGAGAGTTTTGGGAATATCCCCATTAATAGGCCCGAGATCCACATCTATGAATTGA

Protein sequence

MEDLFTLLITEPDLAYHKGFALIPTGWIKKNSFMRSDPNLEYGMKRDQEKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTHFLFSLRVLGISPLIGPRSTSMN

Homology

[Close]

BLAST of CmaCh08G006460 vs. ExPASy Swiss-Prot
Match: Q09WV7 (Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.6e-30
Identity = 83/139 (59.71%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 35  RSDPNLEYGMKRDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQ 94
           RSD N EYG++RDQ                       K S++       F+SRTERSMN+
Sbjct: 752 RSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLIFISRTERSMNR 811

Query: 95  DSNEAYRYKWFNGSKNFQ---EHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKS 149
           D N AYRYKW NGSKN Q   EHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKS
Sbjct: 812 DPN-AYRYKWSNGSKNLQEHLEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKS 871

HSP 2 Score: 43.1 bits (100), Expect = 3.5e-03
Identity = 19/22 (86.36%), Postives = 19/22 (86.36%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFAL 23
           M DLFTL ITEPDL YHKGFAL
Sbjct: 621 MADLFTLSITEPDLVYHKGFAL 642

[Close]

BLAST of CmaCh08G006460 vs. ExPASy Swiss-Prot
Match: P08973 (Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-30
Identity = 94/216 (43.52%), Postives = 110/216 (50.93%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA-------------------------------LIPTGWIK 60
           M DLFTL IT+PDL YH+GF+                               L P  + +
Sbjct: 518 MADLFTLSITDPDLVYHRGFSFSIDSCGLDQKQFLNEVFNSRDESKKKSLLVLSPIFYEE 577

Query: 61  KNSFM----------------------RSDPNLEYGMKRDQ------------------- 120
             SF                       RSD + EYG++RDQ                   
Sbjct: 578 NESFYRRIRKKGVRISRNVLNRFFLINRSDRSFEYGIQRDQIGNDTLNHRTIRKYMINQD 637

Query: 121 ---EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGSKNFQ---EHFISEQKSHFQ 139
               K S++       FLSRTER MN+D  +AYRYKWFNGSKNFQ   EHF+SEQKS FQ
Sbjct: 638 FSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWFNGSKNFQEHLEHFVSEQKSRFQ 697

[Close]

BLAST of CmaCh08G006460 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 81/138 (58.70%), Postives = 91/138 (65.94%), Query Frame = 0


Query: 35  RSDPNLEYGMKRDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQ 94
           RSD N EYG+++DQ                       K S++       FLSRTERSMN 
Sbjct: 748 RSDRNFEYGIQKDQIGNDTLNHRTLMKYTINQHLSNLKQSQKKWFDPLIFLSRTERSMNW 807

Query: 95  DSNEAYRYKWFNGSKNFQEHFISEQKSH--FQVVFDRLRINLYSMDWSEVIEKKDLSKSL 149
           D N +YRYKW NGS NFQEHFISEQKS   FQVVFDRLRIN YS+DWSEVI+KKDLSKSL
Sbjct: 808 DPN-SYRYKWSNGSNNFQEHFISEQKSRFLFQVVFDRLRINQYSIDWSEVIDKKDLSKSL 867

HSP 2 Score: 41.6 bits (96), Expect = 1.0e-02
Identity = 18/21 (85.71%), Postives = 18/21 (85.71%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA 22
           M DLFTL ITEPDL YHKGFA
Sbjct: 617 MADLFTLSITEPDLVYHKGFA 637

[Close]

BLAST of CmaCh08G006460 vs. ExPASy Swiss-Prot
Match: Q2L949 (Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 2.8e-29
Identity = 84/147 (57.14%), Postives = 95/147 (64.63%), Query Frame = 0


Query: 27  WIKKNSFMRSDPNLEYGMKRDQ----------------------EKGSEEMVRSSSSFLS 86
           +IKKN   RSD N EYG++RDQ                       K S++        +S
Sbjct: 741 FIKKN---RSDRNFEYGIQRDQIGNDTLNHRTIMKYTINQHLSNLKKSQKKWFDPLILIS 800

Query: 87  RTERSMNQDSNEAYRYKWFNGSKNFQ---EHFISEQKSHFQVVFDRLRINLYSMDWSEVI 146
           RTERSMN+D N AYRYKW NGSKNFQ   EHF+SEQKS FQVVFDRLRIN YS+DWSEVI
Sbjct: 801 RTERSMNRDPN-AYRYKWSNGSKNFQEHLEHFVSEQKSRFQVVFDRLRINQYSIDWSEVI 860

Query: 147 EKKDLSKSLPFFLSKFLLLLTHFLFSL 149
           +KKDLSKSL FFLSK LL L+  L  L
Sbjct: 861 DKKDLSKSLRFFLSKLLLFLSKLLLFL 883

[Close]

BLAST of CmaCh08G006460 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.7e-29
Identity = 78/134 (58.21%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 35  RSDPNLEYGMKRDQ----------------EKGSEEMVRSSSSF----LSRTERSMNQDS 94
           RSD N EYG++RDQ                 +    + +S   +    +SRTERSMN+D 
Sbjct: 751 RSDRNFEYGIQRDQIGNDTLNHRTIMKYMINQHLSNLKKSQKKWFDPLISRTERSMNRDP 810

Query: 95  NEAYRYKWFNGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFL 149
            +AYRYKW NGSKNFQEHF+SEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFL
Sbjct: 811 -DAYRYKWSNGSKNFQEHFVSEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFL 870

HSP 2 Score: 36.6 bits (83), Expect = 3.3e-01
Identity = 32/119 (26.89%), Postives = 53/119 (44.54%), Query Frame = 0


Query: 3   DLFTLLITEPDLAYHKGFAL-IPTGWIKKNSFMRSDPNLEYGMKRDQEKGSEEMVRSSSS 62
           DLFTL ITEPDL YHKGFAL I +  + +  F+      E    RD+ K     +     
Sbjct: 621 DLFTLSITEPDLVYHKGFALSIDSYGLDQKKFLN-----EVFNSRDESKNKSLSLADPPI 680

Query: 63  FLSRTERSMNQDSNEAYRYKWFNGSKNFQEHFISEQKSHFQVVFDRLRI--NLYSMDWS 119
           F    E    +   ++ R    N  ++ ++  +    ++     ++ R+  NL  + +S
Sbjct: 681 FYEENESFYRRIRKKSVRISCGNDLEDPKQKIVVFASNNIMEAVNQYRLIRNLIQIQYS 734

[Close]

BLAST of CmaCh08G006460 vs. ExPASy TrEMBL
Match: A0A7T1NLZ3 (Uncharacterized protein OS=Bougainvillea hybrid cultivar OX=2259726 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 98/179 (54.75%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA------------LIPTGWIKKNSFMRSDPNLEYGMKRDQ 60
           M DLFTL ITEPDL YHKGF+            ++P  + ++N   RS    EYG++RDQ
Sbjct: 619 MADLFTLSITEPDLVYHKGFSFSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQRDQ 678

Query: 61  ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGS 120
                                  K S++       FLSRTER MN+D  +AYRYKWFNGS
Sbjct: 679 IGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWFNGS 738

Query: 121 KNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTHFL 146
           KNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++ L
Sbjct: 739 KNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSNSL 793

[Close]

BLAST of CmaCh08G006460 vs. ExPASy TrEMBL
Match: A0A411JNX0 (Protein Ycf2 OS=Bougainvillea spectabilis OX=146096 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 98/179 (54.75%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA------------LIPTGWIKKNSFMRSDPNLEYGMKRDQ 60
           M DLFTL ITEPDL YHKGF+            ++P  + ++N   RS    EYG++RDQ
Sbjct: 619 MADLFTLSITEPDLVYHKGFSFSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQRDQ 678

Query: 61  ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGS 120
                                  K S++       FLSRTER MN+D  +AYRYKWFNGS
Sbjct: 679 IGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWFNGS 738

Query: 121 KNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTHFL 146
           KNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++ L
Sbjct: 739 KNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSNSL 793

[Close]

BLAST of CmaCh08G006460 vs. ExPASy TrEMBL
Match: A0A6G9DY74 (Protein Ycf2 OS=Bougainvillea glabra OX=3541 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 6.1e-35
Identity = 98/179 (54.75%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA------------LIPTGWIKKNSFMRSDPNLEYGMKRDQ 60
           M DLFTL ITEPDL YHKGF+            ++P  + ++N   RS    EYG++RDQ
Sbjct: 619 MADLFTLSITEPDLVYHKGFSFSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQRDQ 678

Query: 61  ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGS 120
                                  K S++       FLSRTER MN+D  +AYRYKWFNGS
Sbjct: 679 IGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWFNGS 738

Query: 121 KNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTHFL 146
           KNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++ L
Sbjct: 739 KNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSNSL 793

[Close]

BLAST of CmaCh08G006460 vs. ExPASy TrEMBL
Match: A0A7T1NLL6 (Uncharacterized protein OS=Bougainvillea praecox OX=2794930 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 98/182 (53.85%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA---------------LIPTGWIKKNSFMRSDPNLEYGMK 60
           M DLFTL ITEPDL YHKGF+               ++P  + ++N   RS    EYG++
Sbjct: 619 MADLFTLSITEPDLVYHKGFSFSIDSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQ 678

Query: 61  RDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWF 120
           RDQ                       K S++       FLSRTER MN+D  +AYRYKWF
Sbjct: 679 RDQIGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWF 738

Query: 121 NGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTH 146
           NGSKNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++
Sbjct: 739 NGSKNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSN 796

[Close]

BLAST of CmaCh08G006460 vs. ExPASy TrEMBL
Match: A0A7T1K738 (Uncharacterized protein OS=Bougainvillea peruviana OX=1170580 GN=ycf2 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 98/182 (53.85%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA---------------LIPTGWIKKNSFMRSDPNLEYGMK 60
           M DLFTL ITEPDL YHKGF+               ++P  + ++N   RS    EYG++
Sbjct: 617 MADLFTLSITEPDLVYHKGFSFSIDSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQ 676

Query: 61  RDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWF 120
           RDQ                       K S++       FLSRTER MN+D  +AYRYKWF
Sbjct: 677 RDQIGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWF 736

Query: 121 NGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTH 146
           NGSKNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++
Sbjct: 737 NGSKNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSN 794

[Close]

BLAST of CmaCh08G006460 vs. NCBI nr
Match: YP_009569725.1 (hypothetical protein RF2 [Bougainvillea spectabilis] >YP_009569743.1 hypothetical protein RF2 [Bougainvillea spectabilis] >YP_009755290.1 Ycf2 [Bougainvillea glabra] >YP_009755308.1 Ycf2 [Bougainvillea glabra] >YP_010126730.1 hypothetical protein RF2 [Bougainvillea hybrid cultivar] >YP_010126748.1 hypothetical protein RF2 [Bougainvillea hybrid cultivar] >QTK21973.1 hypothetical protein RF2 [Bougainvillea sp. SJM2] >QTK22145.1 hypothetical protein RF2 [Bougainvillea peruviana] >QBC66761.1 hypothetical protein RF2 [Bougainvillea spectabilis] >QBC66762.1 hypothetical protein RF2 [Bougainvillea spectabilis] >QHF16981.1 Ycf2 [Bougainvillea spectabilis])

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 98/179 (54.75%), Postives = 114/179 (63.69%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA------------LIPTGWIKKNSFMRSDPNLEYGMKRDQ 60
           M DLFTL ITEPDL YHKGF+            ++P  + ++N   RS    EYG++RDQ
Sbjct: 619 MADLFTLSITEPDLVYHKGFSFSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQRDQ 678

Query: 61  ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGS 120
                                  K S++       FLSRTER MN+D  +AYRYKWFNGS
Sbjct: 679 IGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWFNGS 738

Query: 121 KNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTHFL 146
           KNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++ L
Sbjct: 739 KNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSNSL 793

[Close]

BLAST of CmaCh08G006460 vs. NCBI nr
Match: QPO05824.1 (hypothetical protein RF2 [Bougainvillea peruviana] >QPO05842.1 hypothetical protein RF2 [Bougainvillea peruviana])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-34
Identity = 98/182 (53.85%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA---------------LIPTGWIKKNSFMRSDPNLEYGMK 60
           M DLFTL ITEPDL YHKGF+               ++P  + ++N   RS    EYG++
Sbjct: 617 MADLFTLSITEPDLVYHKGFSFSIDSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQ 676

Query: 61  RDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWF 120
           RDQ                       K S++       FLSRTER MN+D  +AYRYKWF
Sbjct: 677 RDQIGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWF 736

Query: 121 NGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTH 146
           NGSKNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++
Sbjct: 737 NGSKNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSN 794

[Close]

BLAST of CmaCh08G006460 vs. NCBI nr
Match: QLD22788.1 (hypothetical chloroplast RF21 [Bougainvillea glabra] >QLD22806.1 hypothetical chloroplast RF21 [Bougainvillea glabra])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-34
Identity = 98/182 (53.85%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA---------------LIPTGWIKKNSFMRSDPNLEYGMK 60
           M DLFTL ITEPDL YHKGF+               ++P  + ++N   RS    EYG++
Sbjct: 619 MADLFTLSITEPDLVYHKGFSFSIDSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQ 678

Query: 61  RDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWF 120
           RDQ                       K S++       FLSRTER MN+D  +AYRYKWF
Sbjct: 679 RDQIGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWF 738

Query: 121 NGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTH 146
           NGSKNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++
Sbjct: 739 NGSKNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSN 796

[Close]

BLAST of CmaCh08G006460 vs. NCBI nr
Match: YP_009863267.1 (hypothetical chloroplast RF21 [Bougainvillea peruviana] >YP_009863285.1 hypothetical chloroplast RF21 [Bougainvillea peruviana] >QTK22059.1 hypothetical chloroplast RF21 [Bougainvillea hybrid cultivar] >QKD77321.1 hypothetical chloroplast RF21 [Bougainvillea peruviana] >QKD77339.1 hypothetical chloroplast RF21 [Bougainvillea peruviana] >QTK22077.1 hypothetical chloroplast RF21 [Bougainvillea hybrid cultivar])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-34
Identity = 98/182 (53.85%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA---------------LIPTGWIKKNSFMRSDPNLEYGMK 60
           M DLFTL ITEPDL YHKGF+               ++P  + ++N   RS    EYG++
Sbjct: 617 MADLFTLSITEPDLVYHKGFSFSIDSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQ 676

Query: 61  RDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWF 120
           RDQ                       K S++       FLSRTER MN+D  +AYRYKWF
Sbjct: 677 RDQIGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWF 736

Query: 121 NGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTH 146
           NGSKNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++
Sbjct: 737 NGSKNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSN 794

[Close]

BLAST of CmaCh08G006460 vs. NCBI nr
Match: YP_010126558.1 (hypothetical protein RF2 [Bougainvillea praecox] >YP_010126576.1 hypothetical protein RF2 [Bougainvillea praecox] >QPO05738.1 hypothetical protein RF2 [Bougainvillea praecox] >QPO05756.1 hypothetical protein RF2 [Bougainvillea praecox])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-34
Identity = 98/182 (53.85%), Postives = 114/182 (62.64%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFA---------------LIPTGWIKKNSFMRSDPNLEYGMK 60
           M DLFTL ITEPDL YHKGF+               ++P  + ++N   RS    EYG++
Sbjct: 619 MADLFTLSITEPDLVYHKGFSFSIDSYGLDQKQFLLVLPPIFYEENESFRS---FEYGIQ 678

Query: 61  RDQ----------------------EKGSEEMVRSSSSFLSRTERSMNQDSNEAYRYKWF 120
           RDQ                       K S++       FLSRTER MN+D  +AYRYKWF
Sbjct: 679 RDQIGNDTLNHRTIRKYTINQHLSNLKKSQKKWFDPLIFLSRTERFMNRDP-DAYRYKWF 738

Query: 121 NGSKNFQEHFISEQKSHFQVVFDRLRINLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTH 146
           NGSKNFQEHFISEQKS FQVVFDRLRIN YS+DWSEVI+KKDLSKSL FFLSK LL L++
Sbjct: 739 NGSKNFQEHFISEQKSRFQVVFDRLRINQYSIDWSEVIDKKDLSKSLRFFLSKSLLFLSN 796

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BLAST of CmaCh08G006460 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-26
Identity = 82/168 (48.81%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 20  FALIPTGWIKK--NSFM---RSDPNLEYGMKRD----------------------QEKGS 79
           F   P G+I+   N F    R D N EYG++RD                        K S
Sbjct: 728 FQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKS 787

Query: 80  EEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGSKNFQ---EHFISEQKSHFQVVFDRLR 139
           ++       FLS+TERS+N+D N AYRYKW NGSKNFQ   EHF+SE+KS FQVVFD+L 
Sbjct: 788 QKKWFDPLIFLSQTERSINRDPN-AYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLC 847

Query: 140 INLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTHFLFSLRVLGISPLI 158
           IN YS+DWSEVI+KKDLSKSL FFLSK L     F  S  +L +S L+
Sbjct: 848 INQYSIDWSEVIDKKDLSKSLRFFLSKLL----RFFLSKLLLFLSKLL 890

HSP 2 Score: 41.2 bits (95), Expect = 9.4e-04
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFAL-IPTGWIKKNSFMRSDPNLEYGMKRDQEKGSEEMV 57
           M DLFTL ITEPDL YHKGFA  I +  + +  F++   N      RD+ K    +V
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQRQFLKEVFNF-----RDESKKKSLLV 668

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BLAST of CmaCh08G006460 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-26
Identity = 82/168 (48.81%), Postives = 99/168 (58.93%), Query Frame = 0


Query: 20  FALIPTGWIKK--NSFM---RSDPNLEYGMKRD----------------------QEKGS 79
           F   P G+I+   N F    R D N EYG++RD                        K S
Sbjct: 728 FQYSPYGYIRNVLNRFFLMKRPDRNFEYGIQRDLIGNDTLNHRTIMKDTINQHLSNLKKS 787

Query: 80  EEMVRSSSSFLSRTERSMNQDSNEAYRYKWFNGSKNFQ---EHFISEQKSHFQVVFDRLR 139
           ++       FLS+TERS+N+D N AYRYKW NGSKNFQ   EHF+SE+KS FQVVFD+L 
Sbjct: 788 QKKWFDPLIFLSQTERSINRDPN-AYRYKWSNGSKNFQEHLEHFVSERKSRFQVVFDQLC 847

Query: 140 INLYSMDWSEVIEKKDLSKSLPFFLSKFLLLLTHFLFSLRVLGISPLI 158
           IN YS+DWSEVI+KKDLSKSL FFLSK L     F  S  +L +S L+
Sbjct: 848 INQYSIDWSEVIDKKDLSKSLRFFLSKLL----RFFLSKLLLFLSKLL 890

HSP 2 Score: 41.2 bits (95), Expect = 9.4e-04
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 0


Query: 1   MEDLFTLLITEPDLAYHKGFAL-IPTGWIKKNSFMRSDPNLEYGMKRDQEKGSEEMV 57
           M DLFTL ITEPDL YHKGFA  I +  + +  F++   N      RD+ K    +V
Sbjct: 617 MADLFTLSITEPDLVYHKGFAFSIDSYGLDQRQFLKEVFNF-----RDESKKKSLLV 668

The following BLAST results are available for this feature:

BLAST of CmaCh08G006460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q09WV7	2.6e-30	59.71	Protein Ycf2 OS=Morus indica OX=248361 GN=ycf2-A PE=3 SV=1	[more]
P08973	4.4e-30	43.52	Protein Ycf2 OS=Spinacia oleracea OX=3562 GN=ycf2-A PE=3 SV=2	[more]
Q14F97	1.7e-29	58.70	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]
Q2L949	2.8e-29	57.14	Protein Ycf2 OS=Gossypium hirsutum OX=3635 GN=ycf2-A PE=3 SV=1	[more]
A6MM80	3.7e-29	58.21	Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh08G006460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7T1NLZ3	6.1e-35	54.75	Uncharacterized protein OS=Bougainvillea hybrid cultivar OX=2259726 GN=ycf2 PE=4...	[more]
A0A411JNX0	6.1e-35	54.75	Protein Ycf2 OS=Bougainvillea spectabilis OX=146096 GN=ycf2 PE=3 SV=1	[more]
A0A6G9DY74	6.1e-35	54.75	Protein Ycf2 OS=Bougainvillea glabra OX=3541 GN=ycf2 PE=3 SV=1	[more]
A0A7T1NLL6	1.4e-34	53.85	Uncharacterized protein OS=Bougainvillea praecox OX=2794930 GN=ycf2 PE=4 SV=1	[more]
A0A7T1K738	1.4e-34	53.85	Uncharacterized protein OS=Bougainvillea peruviana OX=1170580 GN=ycf2 PE=4 SV=1	[more]

BLAST of CmaCh08G006460 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009569725.1	1.3e-34	54.75	hypothetical protein RF2 [Bougainvillea spectabilis] >YP_009569743.1 hypothetica...	[more]
QPO05824.1	2.8e-34	53.85	hypothetical protein RF2 [Bougainvillea peruviana] >QPO05842.1 hypothetical prot...	[more]
QLD22788.1	2.8e-34	53.85	hypothetical chloroplast RF21 [Bougainvillea glabra] >QLD22806.1 hypothetical ch...	[more]
YP_009863267.1	2.8e-34	53.85	hypothetical chloroplast RF21 [Bougainvillea peruviana] >YP_009863285.1 hypothet...	[more]
YP_010126558.1	2.8e-34	53.85	hypothetical protein RF2 [Bougainvillea praecox] >YP_010126576.1 hypothetical pr...	[more]

BLAST of CmaCh08G006460 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	2.3e-26	48.81	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	2.3e-26	48.81	Chloroplast Ycf2;ATPase, AAA type, core	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 61..148 e-value: 1.3E-37 score: 128.7
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 62..135
None	No IPR available	PANTHER	PTHR33078:SF39	BNAA06G19300D PROTEIN	coord: 62..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G006460.1	CmaCh08G006460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity