CmaCh08G006200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G006200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Sodium channel protein type 10 subunit alpha like
Location	Cma_Chr08: 3481646 .. 3484377 (-)
RNA-Seq Expression	CmaCh08G006200
Synteny	CmaCh08G006200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATCATAGTCGACTTTTCTCTCCTCACAATGGCATCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACTGCCCCCGCAATCGCCATTCCTCTCTTCTCAAGCTTCCATGCTCGTCCGGAAATTTCCTTCTCTCCGCTTCATCATCGTCGTTCATCTCTCTTGCTCTCTTTTAATCCCTGTGCTAAATCCGCCGTTTGTACTGCAGCAGTACGCCCGCCTCCGGACTCCGATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTAATATTCTTTGCTGGTGCTTCTCGTGCTTAATTCATTTATTGGACTGAACTGCTCGTGTTAAGGCTTAGAAATTTTAGTGCATAGAGCTTGGTTATGTGTTTACTTATTTCTATTTCGTTTTTCCATGAACGGTTGAGGAGTTCGCTTTATCCTTATCCCTATAGCATGCCTTCATGACTGAAAATAAAAATTATTAGCTCCTGAATTTTGCTCGGATTGTGCTAGACTGCTAGTGGTCCTTATTTCTCGACTGCTACAACTAATAACAGTGTTATTTATCCATTTGAGTTCTGGTTGTTTAGAAGCTAATCATCCATAAATATTTTTCGTTTTTTTAGTCATCTGGAAATTTGTTCCGCTAGGTCTGCGGATACATATGTGCTTAGCAATTATATCTAATTTTCTCGTGATTTATTTTGAAAGTTTGTTAGATAGAAAGTTCTGCTCAATACGTCATAGATATGTTGAAATCTCAACGGAAAAGAAATAATGGTATTTGGAGTGTGCGATTCATTAGGTTCAACTACTCCGTAATCATTTTTCATTAACCGCGTCAGCAAAGTTCAATTGTCAATTTTAATGAGCAATTCGTAAACATATCCGAGTATAGATGTTTAGCTGCAAATATAAAGCCATTTCCCCCTCCATAACAACAGTTATATATATTTGCTTTCGTGCAAGAATCATAGCGATTTCTTAGGATTCAACTTTCCGATTGTAAGATGAAGTGTCTTCTTCTTTTCTAGCCCCTTATCGTATAGCTGCTGGAGACTTTTGGTCTTTGATGATGATTCCCCGCTGAAGTTGAAGTTGTTTGGCTTGGATAACTTAGGCCTTTGATAATCATTTGGCTTCCGGAAATTGTGTTTGATTTCTTATTAATTCTCTACCATGAGTTTCATCTTTCTTAACCAAACATTTAAAGTTTTAGCCAAATTCCAAAAACAGTAACATGTTTAAATTTTTTTTTTTTTTCTAGTTTTCAAAACTTGACTGGTTTTTTAAAACATAGATAACAAAATAAAGAAATTCATAGGCCAAAGTAATATTTATTGACTTAAATTTCAATAATCAAACAGTTATCAAACAAGATTTTAATTTTTCTTTCAATTCATTTTTTGACACTCCCTTGGCCAAATATTAATTTTGGTTCACGATGCCTAACATGTGATCATTTAGTATGAAATGGGATGAAATTGGAAAGGATATTCCGGTGATTTGAGACGTATCTAGGTTTTCTACCTTAAATTAGTGTACTCTATCCAAACTTCTTTTTTGTAACTATAGCTTCTTGATTATAGCCAATTGGAGTGCTTTTCTGCAGTTTTCTTGCATTCTGGGAGATTGTTAAGCTTCATCGTCTGTATTAGATTAAAACTGTTGGTGTTGGTAATACTCTGAAATTCTACCGAGTCATTATATATTTTTGATGTTAGAACTTGGTACTAATTTTCTTGCATGTAATTCATATTGTAACTTGTTTGGTCTATTTTGAATTGCTTTGGTCATGCTGAGGTTCTTTGATGTGGATGAAATATGTTTCCTTATTTCTCTTCGTATTATAATTTAAGCAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAAAAAAAGCATTCTTTTGTAAAGGATTGCAGGTTAATATAAATAGTGTTAAGCTGCTTGATTTTAGCTATGTTCAAGATATATAGAAGCCTTAGACGAGGTAGATAAAGCTTGCTCAATTAGATGTTGATACCAAAGGTAAACTGTCATGGAAAGCCCTGTTCTGTATCATATTCTTATCAAGTGTCTTAAAACTTTCCTGAATCCTACTCTAATTATTAACTTTTTTTCTTTTTTGAACCTTGATTTGTGCACATCATCCTTGCGTAGGGCTATGCAAGTGCACATCATCCTCGTATTGCGTCATGTCAATTTTCTTTGTATTGTTTCAACTTCTCTGATGCCTCTAGAGTGACAACGACCAATCTTTTTCACTACTAAGTTACAATTCTGTATAGATTGTTCTGGTAGGTGTTTTCTTTGACAGGGATTTGGTTGATGGATGTACAAGATTGTCTACGAGGGTTGCAGTTGAAACATTTGGAATCATTGTGTTGCTTGCAGCATCAGAATGATGGGAGATATGTTTGGTTCTTGAGATAATTAGAAGTCTTTGCCACAACCTGGTTGACACATTGCCCATAGTTATACGTATGGCTACAATTTATTTTTGCATTAAATAAATTTTAAAAGTAGTGGTCAAATTGTATTTTGCTAGGTTTATGAGAAGCCGAAAGTACTTGAGCTTTTAGTAGATGACATAGCTTTAAAAAAATTAAAA

mRNA sequence

ATGGAATCATAGTCGACTTTTCTCTCCTCACAATGGCATCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACTGCCCCCGCAATCGCCATTCCTCTCTTCTCAAGCTTCCATGCTCGTCCGGAAATTTCCTTCTCTCCGCTTCATCATCGTCGTTCATCTCTCTTGCTCTCTTTTAATCCCTGTGCTAAATCCGCCGTTTGTACTGCAGCAGTACGCCCGCCTCCGGACTCCGATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAGTTTCGTAAAAAAAGCATTCTTTTGTAAAGGATTGCAGGTTAATATAAATAGTGTTAAGCTGCTTGATTTTAGCTATGTTCAAGATATATAGAAGCCTTAGACGAGGTAGATAAAGCTTGCTCAATTAGATGTTGATACCAAAGGTAAACTGTCATGGAAAGCCCTGTTCTGTATCATATTCTTATCAAGTGTCTTAAAACTTTCCTGAATCCTACTCTAATTATTAACTTTTTTTCTTTTTTGAACCTTGATTTGTGCACATCATCCTTGCGTAGGGCTATGCAAGTGCACATCATCCTCGTATTGCGTCATGTCAATTTTCTTTGTATTGTTTCAACTTCTCTGATGCCTCTAGAGTGACAACGACCAATCTTTTTCACTACTAAGTTACAATTCTGTATAGATTGTTCTGGTAGGTGTTTTCTTTGACAGGGATTTGGTTGATGGATGTACAAGATTGTCTACGAGGGTTGCAGTTGAAACATTTGGAATCATTGTGTTGCTTGCAGCATCAGAATGATGGGAGATATGTTTGGTTCTTGAGATAATTAGAAGTCTTTGCCACAACCTGGTTGACACATTGCCCATAGTTATACGTATGGCTACAATTTATTTTTGCATTAAATAAATTTTAAAAGTAGTGGTCAAATTGTATTTTGCTAGGTTTATGAGAAGCCGAAAGTACTTGAGCTTTTAGTAGATGACATAGCTTTAAAAAAATTAAAA

Coding sequence (CDS)

ATGGCATCGCCCTCTCTCTCTACTTCGAACGCTCTCTACCATCCTTCACGGGCCGTTACTGCCCCCGCAATCGCCATTCCTCTCTTCTCAAGCTTCCATGCTCGTCCGGAAATTTCCTTCTCTCCGCTTCATCATCGTCGTTCATCTCTCTTGCTCTCTTTTAATCCCTGTGCTAAATCCGCCGTTTGTACTGCAGCAGTACGCCCGCCTCCGGACTCCGATCCGCCTCCTGACGAGGATCCGATTCGTCTAAAAGGTTTTCCAGCAATTTTCTCAAAATTTGGAGACAGAGTACAGATTTTCTTTGCTGTGTTATTCTGGATGTCCCTCTTCTTCTGGACTTCTGCATTGGATGGAAAAAATAGACCTAATAAGGGCTCTCGATTTAGACGATAG

Protein sequence

MASPSLSTSNALYHPSRAVTAPAIAIPLFSSFHARPEISFSPLHHRRSSLLLSFNPCAKSAVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGKNRPNKGSRFRR

Homology

[Close]

BLAST of CmaCh08G006200 vs. TAIR 10
Match: AT3G15780.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-13
Identity = 48/132 (36.36%), Postives = 64/132 (48.48%), Query Frame = 0


Query: 1   MASPSLSTSNALYHPSRAVTAPAIAIPLFSSFHARPEISFSPLHHRRSSLLLSFNPCAKS 60
           MA  + +TS  LYH S       I  P    +H           HRR+++LL+     + 
Sbjct: 3   MALSNPTTSTNLYHYS-------ILSPFSPPYHL----------HRRNTVLLASPRRLRR 62

Query: 61  AVCTAAVRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALD-- 120
                    PP  DPPP ED  +L+G     ++  DRV+IF AV FWM LFFW +  D  
Sbjct: 63  LAVAGGPPSPPGPDPPPPEDTTQLEGLVGAVTRVQDRVKIFLAVFFWMFLFFWVTVTDGT 117

Query: 121 GKNRPNKGSRFR 131
           GK +  KGSRF+
Sbjct: 123 GKGKGKKGSRFK 117

[Close]

BLAST of CmaCh08G006200 vs. TAIR 10
Match: AT1G52550.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15780.1); Has 53 Blast hits to 51 proteins in 18 species: Archae - 0; Bacteria - 8; Metazoa - 4; Fungi - 0; Plants - 23; Viruses - 8; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 65.5 bits (158), Expect = 3.7e-11
Identity = 46/129 (35.66%), Postives = 62/129 (48.06%), Query Frame = 0


Query: 7   STSNALYHPSRAVTAPAIAIPLFSSFHARPEISFSPLHHRRSSLLLSFNPCAKSAVCTAA 66
           S+SN   H  R    P  +   FS F +      SPL  +   L+ +  P  + AV    
Sbjct: 10  SSSNLYLHRCRK-NHPLPSPSFFSPFRS------SPLPSQTLFLVPTPKPVRRIAVAPLG 69

Query: 67  VRPPPDSDPPPDEDPIRLKGFPAIFSKFGDRVQIFFAVLFWMSLFFWTSALDGK-----N 126
              PP  DPPP ++   L     + S   DRV+IF +VL W+SLFFW SAL G+      
Sbjct: 70  PPTPPSPDPPPPKNTTELTSLVGVASMIQDRVKIFLSVLIWISLFFWASALQGRGSKGNG 129

Query: 127 RPNKGSRFR 131
           +  KGSRF+
Sbjct: 130 KGKKGSRFK 131

The following BLAST results are available for this feature:

BLAST of CmaCh08G006200 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh08G006200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15780.1	3.0e-13	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G52550.1	3.7e-11	35.66	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37706	TRANSMEMBRANE PROTEIN	coord: 26..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G006200.1	CmaCh08G006200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane