CmaCh08G005980 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G005980
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionTranslation initiation factor IF-2 like
LocationCma_Chr08: 3397007 .. 3401222 (-)
RNA-Seq ExpressionCmaCh08G005980
SyntenyCmaCh08G005980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATAAAGAATAAATTTATAGACCAAATGAAATCAAAACAAAATCCCTTTCAATAAATCTAAGAATCCTAAAATTTCCTTCTCATTACCATGAATTATTTACTCCGAGGGATTAAATGCAAAACCCAAAAGGAAAAAAGAAAACAAAACGAAAGTAACTATTATTGGCATTTATATTCAGGAGGGTAGAATAGTAAATAAGAAAATGTGGAGGGCAAGGGATGAATCACACGTGTGGAGTAGATAAACGGCACGTGTAAAAAAAGATTGAAGGTCACGCGCTTCAATAGTAACGAACTTATAAAACCCATACCACCCACCACATTTATGCCCTTTCGCCGCTCCTTTATATTCCCTTAAAAAATTATAATAACAGAAATATTAAGAAAAAAGCAAAATATTAGGAAAATACGTGGAGTAATTGCCACGTTTTCGTAAGGGGACCGTATGAGGTGGAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAATTGTAGAGAGAGAAAGTAGGGAATTAAGAGAGTAGATGAGCAAGTAATGAACGTGACCATCCACTCCCAAATGACATGGCCCCATCTATATATACCTTCTTCATCCATTCCTCCCCTTTTCTCCTCCTTTCTATCTCTCTCTCTGCCTCTCTCTCCGCCATGTCCGACGACAAATGGGTCGATGTTGCTCTCTCCGACGACTCTCTTGTCGTCGACTTACTTCTTCGCCTCAACCGTTCTCCGCTGGTCAATCCTCTCTCACCCCCGCTCCGCCTCGATTGGTCCATCCGCCAGCCCCGCTCCAAGCCGATTCTACCTCGTCAGGCCTCCGATTCCGCCGGTAAAAACTCCGATGAAGCGGCTAGAGCCAGTCCGACTACGCCTCTCACTTGGAGTAGTGGCGGTGGCGCTACCTCCGTCAGTGGCGGATTCGTTGACGCCGTAAGATCTAAGGTTGGTTTCGGTTTCGGTTTTTGCTTTGGTGTTCTATTTTTTCTGAAAACTCGGTTAGTGCGTTTAAAAGACGAAAATGCCCCTCCGTGGAACACATTTCTTGTTCTTTTTCCGTCGGCGACTCTCAAATGTTTGCACCCTTTTCTTCAAACTTCTAATTATTCCTCTTTGTGAATTACGATTCTACCCTTCCCTTCCCTTTTTCCACCACCGGCGACTTTCCCGTCAAGATTTTCAAAATTACCGGAATACCCATTTCGACCAACAACGAAAACGGAAAACCCTTTTGCCCATTCATCCCAACGGTGACCTCTGAGGGAGTCCACAGCAATAGGTCAAAGAGTGGCATTTTGGTAATTTAAACAAAAAAAAAAAAAAAAAAAGGAGGAAGCAGTATGAAAAGAGTCAAACCCCTGTCTCCATTGGCCCAATAACTCCTATCTTGAACATAGTCAAACCCTAGACTCTACCCCAAGGGTCACTTTCGTCATTTCACCCCGAAGCCCAAAAAGGGCCCCTCTTTATCGGTGGCGTGTTTCCATGGCAACGATGTCTGTGTGTCAATGGTGTTGGTGGTTGTGCCCTTCGTTTATGAAAATCATTAAAAAAAAAAAAATTAAAAAAAAAATCCAGTGCGGTCAGTTTCACCATAGCTTTATACACTTGCTTCATCACTACACTTCTTGTTCCCAAATCTGACAAAAGTTTTATGTTTGTATGTTTTTTGTTAATGTTAAAAGAGAAAGTAGATTCGTTTGTATGGTCAAAAGATGTGTCGTGTTCTTTCCTATAACCATGAATTTTTGTGTCCGGACAATGGTACAACTAACACTGCCCCTTTTTGGTGAACTCCTTGTTTAATCATTACAAACTAATCCTTGTTTAACACTTGTTAATTGTTGATTAACTACTTAATGGGTTCTTCATCGTGTTGAATGGAGGAGAGACGTCCCCACTTGTGGAAAAAGTGTTCAACTTGTGAAATGGGGCATTTTTAATTCAGTGCCTTTCTTCATTTGGTTGGATTGGTGGTATTAGTGGCTATGATTGTTTAGTACTCACCTCGGGTTTCGGTTTGAATCCTTATCTCACGTATATGAACACTTGACCTCGACTCGAGTCCGGATCGAGATCCGTTTGTTCTTTATTTATGGTTTCTCTGTAATTGTTTAGTAGTGACCTCGGGTTTGGGTTTGAATCCTTATCTCACATATGAAAACTGACCTCAACCCGACCCGAGTCAGCACCAGGATCCATTTGTTCTTTGTTTATAGTTTTTTCTATCATTTGAGTTGATTGTTTAGTAGGGGTTGTTATGATACTTTTGTAACTTCACTACTAAAACCTCGGGTTTGGGTTTGAATCCTTATCTCACGTACGAAAACTTGACCTGGACCCGGGTCTGAATCCGGATCAAATTGTTGGTTATTTGACTAAGGGGATGAGTTTTGAATGTATATGTGCAGAATGCTGGTAAGAGTGAAGCAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGGTATGGTTTTTTTGACCCTTTGCTTTGCCTTCTTTTGGTTAGTGTATTAGATTCTGATATCATTTCCTTTTTGGACAATCATGATGGGTATCCATGGTGGTTGGCAGACACTAGGAGAACTCAAAGAGGAGGAGGTTTTGCTATTGAAGGAAAGGAGAAGCTTGAAAGATGTATGTTTTTTTCTGTAAGAATAATATGATAATGGTCGTTTTCTAGCGTCGGTCTCGGTCGAGCTCTTGATAAGCTTTTCCTTTTATAAGAGCAGGCCTTGGCGATCTTGCGGCTCACTGTAGAAGAACAGAGGTCTATCAATGGAAGCTTGAAGAAAATGAAGGTGAAGAACTTCCACTGTTATTTCTCTTTGACTGGAAAGCTGCTGCTTTTTCTTTCTTGCTTTAGCCCTTTTTCTTATGTCCTTTTTGCTGAGGTTTGCATATGTAACTATGATCTGTCCAAGCCCACCGCTAGTAGATATTGTTCGGACTTTCCCTTTCGGGATTTCCTGTAAGGTTTTTTAACCGTGTCTGCTACGGAGAGGTTTCCACACCCTTATAAAGAATTCTTTGTTCTCATCCCCAATCGATGTAGGATCTTGCAATCCACTCCCCTTCGGGACCCAGCGTCCTCACTGATACTCACTCCCTTCTCCAACTGATGTGGGACCCCCCAAATTCACCCCCTTTTCAGACCCAGCGTCCTTGCTGACACACTGCCTCGTGTCTACCCTTCTTTGGGGCTCAGCTTCTTCGCTGGCACATCGTCTAGTATCTAGCTCTAATACCATTTGCAATAGTCAAAGCCCACTGATAGCAGATATTGTCCTCTTTGGACTTTCTCTTTCGGACTTCCCCTCAAGATTTTTAAAACACATCTGCTAGGGAGAGGCTTCCACACCGTTATAAGAAATTCTTTATTCTCCTCCCGGACGCGGGAATCAAATGGGTTGTTTATGAACTGATTCTTTTCAAAATAGTTCCAAAAGTAGTGCTTTATTAATTAGGTAACTTTGAGGATTGGAACAGCTTTAGCTGTTTTTACTGAATGTGTTACATAAAGAAGCTAACTTGTTCTTTTTGAAACTCTACAGATGGATTTCGATTCGCAACAAGCGATCGAGATGCCTGTAACATCTGCTATGCCGAAGGAGGTGAGCTCTGACCGACCTCAACTGCAGACGCTACTGATATCTATATGCAACACAATGCCTGTCGGCGTCGATGCTTCTTCTTACCAATTACCTCTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTCTTGTGACCGTTCGTTCGATACCCGATCTTAATATGCCTTTTCAAGAGGACTCCGATGCCGACGTCTTGTACCAAATGAGCTAAGACAAATTCAACTGAAACAAATCGATATTAAGCTTCAATAACTAAGAGGGACAAAGATCGATAACGACAACGACGACGACAACAACAACAAAACCATTTGCTTCTTAATAAGATGTAGTTACTGAATCCTAACCGTCATAGGCTCGAGTTACTTACAACTGTAATTACGTAACCATTTTTCTTAGTTGCATATTCATATATCTTCTTTTTTCCCTTCCCATAGTACGTGAAAAAATCGAGCATAGAATCGTGGAGAGACCCCGAAAACTCGTTAGCTGTTTAGTTATTATATTATTCATTCACAGTCAGTCTGCTTATTCTGTTTGTAGCCAACCCTTACCCTGTAATTACTGCATAATTTCAAACAAAGTTCAGTGTTCCATTTCA

mRNA sequence

TTAATAAAGAATAAATTTATAGACCAAATGAAATCAAAACAAAATCCCTTTCAATAAATCTAAGAATCCTAAAATTTCCTTCTCATTACCATGAATTATTTACTCCGAGGGATTAAATGCAAAACCCAAAAGGAAAAAAGAAAACAAAACGAAAGTAACTATTATTGGCATTTATATTCAGGAGGGTAGAATAGTAAATAAGAAAATGTGGAGGGCAAGGGATGAATCACACGTGTGGAGTAGATAAACGGCACGTGTAAAAAAAGATTGAAGGTCACGCGCTTCAATAGTAACGAACTTATAAAACCCATACCACCCACCACATTTATGCCCTTTCGCCGCTCCTTTATATTCCCTTAAAAAATTATAATAACAGAAATATTAAGAAAAAAGCAAAATATTAGGAAAATACGTGGAGTAATTGCCACGTTTTCGTAAGGGGACCGTATGAGGTGGAAAAAAAAAAGAAAAAAGAAAAAAGAAAAAAGAAAAATTGTAGAGAGAGAAAGTAGGGAATTAAGAGAGTAGATGAGCAAGTAATGAACGTGACCATCCACTCCCAAATGACATGGCCCCATCTATATATACCTTCTTCATCCATTCCTCCCCTTTTCTCCTCCTTTCTATCTCTCTCTCTGCCTCTCTCTCCGCCATGTCCGACGACAAATGGGTCGATGTTGCTCTCTCCGACGACTCTCTTGTCGTCGACTTACTTCTTCGCCTCAACCGTTCTCCGCTGGTCAATCCTCTCTCACCCCCGCTCCGCCTCGATTGGTCCATCCGCCAGCCCCGCTCCAAGCCGATTCTACCTCGTCAGGCCTCCGATTCCGCCGGTAAAAACTCCGATGAAGCGGCTAGAGCCAGTCCGACTACGCCTCTCACTTGGAGTAGTGGCGGTGGCGCTACCTCCGTCAGTGGCGGATTCGTTGACGCCGTAAGATCTAAGAATGCTGGTAAGAGTGAAGCAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGACACTAGGAGAACTCAAAGAGGAGGAGGTTTTGCTATTGAAGGAAAGGAGAAGCTTGAAAGATGCCTTGGCGATCTTGCGGCTCACTGTAGAAGAACAGAGGTCTATCAATGGAAGCTTGAAGAAAATGAAGATGGATTTCGATTCGCAACAAGCGATCGAGATGCCTGTAACATCTGCTATGCCGAAGGAGGTGAGCTCTGACCGACCTCAACTGCAGACGCTACTGATATCTATATGCAACACAATGCCTGTCGGCGTCGATGCTTCTTCTTACCAATTACCTCTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTCTTGTGACCGTTCGTTCGATACCCGATCTTAATATGCCTTTTCAAGAGGACTCCGATGCCGACGTCTTGTACCAAATGAGCTAAGACAAATTCAACTGAAACAAATCGATATTAAGCTTCAATAACTAAGAGGGACAAAGATCGATAACGACAACGACGACGACAACAACAACAAAACCATTTGCTTCTTAATAAGATGTAGTTACTGAATCCTAACCGTCATAGGCTCGAGTTACTTACAACTGTAATTACGTAACCATTTTTCTTAGTTGCATATTCATATATCTTCTTTTTTCCCTTCCCATAGTACGTGAAAAAATCGAGCATAGAATCGTGGAGAGACCCCGAAAACTCGTTAGCTGTTTAGTTATTATATTATTCATTCACAGTCAGTCTGCTTATTCTGTTTGTAGCCAACCCTTACCCTGTAATTACTGCATAATTTCAAACAAAGTTCAGTGTTCCATTTCA

Coding sequence (CDS)

ATGGCCCCATCTATATATACCTTCTTCATCCATTCCTCCCCTTTTCTCCTCCTTTCTATCTCTCTCTCTGCCTCTCTCTCCGCCATGTCCGACGACAAATGGGTCGATGTTGCTCTCTCCGACGACTCTCTTGTCGTCGACTTACTTCTTCGCCTCAACCGTTCTCCGCTGGTCAATCCTCTCTCACCCCCGCTCCGCCTCGATTGGTCCATCCGCCAGCCCCGCTCCAAGCCGATTCTACCTCGTCAGGCCTCCGATTCCGCCGGTAAAAACTCCGATGAAGCGGCTAGAGCCAGTCCGACTACGCCTCTCACTTGGAGTAGTGGCGGTGGCGCTACCTCCGTCAGTGGCGGATTCGTTGACGCCGTAAGATCTAAGAATGCTGGTAAGAGTGAAGCAGTTGCAACAATGAAGAGGCCAAGAAAGAAAAAGACACTAGGAGAACTCAAAGAGGAGGAGGTTTTGCTATTGAAGGAAAGGAGAAGCTTGAAAGATGCCTTGGCGATCTTGCGGCTCACTGTAGAAGAACAGAGGTCTATCAATGGAAGCTTGAAGAAAATGAAGATGGATTTCGATTCGCAACAAGCGATCGAGATGCCTGTAACATCTGCTATGCCGAAGGAGGTGAGCTCTGACCGACCTCAACTGCAGACGCTACTGATATCTATATGCAACACAATGCCTGTCGGCGTCGATGCTTCTTCTTACCAATTACCTCTGCCAAATGTTTCTTGCAAACTACAGGAGATGGGAACTCTTGTGACCGTTCGTTCGATACCCGATCTTAATATGCCTTTTCAAGAGGACTCCGATGCCGACGTCTTGTACCAAATGAGCTAA

Protein sequence

MAPSIYTFFIHSSPFLLLSISLSASLSAMSDDKWVDVALSDDSLVVDLLLRLNRSPLVNPLSPPLRLDWSIRQPRSKPILPRQASDSAGKNSDEAARASPTTPLTWSSGGGATSVSGGFVDAVRSKNAGKSEAVATMKRPRKKKTLGELKEEEVLLLKERRSLKDALAILRLTVEEQRSINGSLKKMKMDFDSQQAIEMPVTSAMPKEVSSDRPQLQTLLISICNTMPVGVDASSYQLPLPNVSCKLQEMGTLVTVRSIPDLNMPFQEDSDADVLYQMS
Homology
[Close]
BLAST of CmaCh08G005980 vs. TAIR 10
Match: AT1G80610.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 73 Blast hits to 69 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 55; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). )

HSP 1 Score: 102.8 bits (255), Expect = 4.5e-22
Identity = 83/201 (41.29%), Postives = 108/201 (53.73%), Query Frame = 0 

Query: 29  MSDDKWVDVALSDDSLVVDLLLRLNRSPLVNPL-SPPLRLDWSIRQPRSKPILPRQASDS 88
           MS + W+ VA+SDDS+V + LLRL  S   N + + PL+L WS+RQ RSK          
Sbjct: 1   MSGENWIRVAMSDDSMVAEALLRLRHSEPKNRVDASPLKLKWSVRQRRSK---------- 60

Query: 89  AGKNSDEAARASPTTPLTWS-----SGGGATSVSGGFV----------------DAVRSK 148
                 +  RASPTTPL+WS     SGGG +  SG                   +  RSK
Sbjct: 61  ----KGDQTRASPTTPLSWSGATSLSGGGGSGGSGAGATTMEGLEESSAAVKPSEPFRSK 120

Query: 149 NAGKSEAVAT-----MKRPRKKKTLGELKEEEVLLLKERRSLKDALAILRLTVEEQRSIN 203
            +  S    T      KR RKKKTL ELKEEE++LLKE   LK+ LA +R  +E+QR+ N
Sbjct: 121 ISQTSAITTTTTTTLFKRSRKKKTLAELKEEEIMLLKESNGLKNELANMRDLLEQQRARN 180

[Close]
BLAST of CmaCh08G005980 vs. TAIR 10
Match: AT1G15800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 56 Blast hits to 52 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 56; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-20
Identity = 73/183 (39.89%), Postives = 100/183 (54.64%), Query Frame = 0 

Query: 29  MSDDKWVDVALSDDSLVVDLLLRLNRSPLVNPL-----SPPLRLDWSIRQPRSKPILPRQ 88
           M+   W+  A+ DDSLV + L+ L  +    P      +  L+L WS+RQPR+K    R 
Sbjct: 1   MTGGDWIHEAMGDDSLVAEALICLLHAEPSLPETKSGGASDLKLKWSVRQPRTKAATLR- 60

Query: 89  ASDSAGKNSDEAARASPTTPLTWS-------SGGGATSVSGGF---------VDAVRSKN 148
                 K  D   RASPTTPL+WS        GGGA +   GF          +AVRSK 
Sbjct: 61  ------KKGDHDTRASPTTPLSWSGATSFSGGGGGAAAAVDGFEESSGVVKLSEAVRSKI 120

Query: 149 AGKSEAVATMKRPRKKKTLGELKEEEVLLLKERRSLKDALAILRLTVEEQRSINGSLKKM 191
              S   +  KR RKKKTL +LKEEE +LLKER  L++ LA ++  +++QR+ N SLKK+
Sbjct: 121 TQTSVTTSPFKRSRKKKTLAQLKEEESVLLKERNGLRNELATMQDLLKQQRARNESLKKL 176

[Close]
BLAST of CmaCh08G005980 vs. TAIR 10
Match: AT4G32030.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80610.1); Has 63 Blast hits to 59 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 5.7e-17
Identity = 96/275 (34.91%), Postives = 131/275 (47.64%), Query Frame = 0 

Query: 32  DKWVDVALSDDSLVVDLLLRLNRSPLV---NP--LSPPLRLDWSIRQPRSKPILPRQASD 91
           D WV VA++DD LVV+LLLRL  +  V   NP  + PPLR  W IRQ RS+     +   
Sbjct: 13  DDWVAVAITDDDLVVELLLRLKHAGTVVSDNPAVILPPLR--WGIRQRRSR---SSRFGG 72

Query: 92  SAG-----KNSDEAARASPTTPLTWS----SGGGATSVSG-GFVDAVRSKNAGKSEAVAT 151
             G     K   ++ RASP TPL+WS    SGGG+ S S  GF D  R  +   S    +
Sbjct: 73  GGGVLVSLKKDVDSVRASPKTPLSWSGGSGSGGGSASPSADGFEDNSRQASCSTSTGSGS 132

Query: 152 ------------MKRPRKKKTLGELKEEEVLLLKERRSLKDALAILRLTVEEQRSINGSL 211
                        KR +K+K+  ELK EE L LKER  L+  +A LR T +EQ   N  L
Sbjct: 133 KVFPTNEITSCFSKRLKKRKSSFELKNEENLKLKERLDLEKEIASLRATFDEQNLRNQKL 192

Query: 212 KKMKMDFDSQQAIEMPVTSAMPKEVSSDRPQLQTLLISICNTMPVGVDASSYQLPLPNVS 271
           K++K+D +S +     VT+  P ++   + QL+ L  S                     S
Sbjct: 193 KRIKLDLNSGR-----VTNKKPVDLIR-KSQLERLQGS--------------------KS 252

Query: 272 CKLQEMGTLVTVRSIPDLNMPFQEDSDADVLYQMS 280
           CK  +     +   +PDLNM     S+ ++LY  S
Sbjct: 253 CKTSDSQNQGSFFVLPDLNM---APSEEEILYGTS 253

[Close]
BLAST of CmaCh08G005980 vs. TAIR 10
Match: AT4G32030.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15800.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-10
Identity = 65/160 (40.62%), Postives = 82/160 (51.25%), Query Frame = 0 

Query: 32  DKWVDVALSDDSLVVDLLLRLNRSPLV---NP--LSPPLRLDWSIRQPRSKPILPRQASD 91
           D WV VA++DD LVV+LLLRL  +  V   NP  + PPLR  W IRQ RS+     +   
Sbjct: 13  DDWVAVAITDDDLVVELLLRLKHAGTVVSDNPAVILPPLR--WGIRQRRSR---SSRFGG 72

Query: 92  SAG-----KNSDEAARASPTTPLTWS----SGGGATSVSG-GFVDAVRSKNAGKSEAVAT 151
             G     K   ++ RASP TPL+WS    SGGG+ S S  GF D  R  +   S    +
Sbjct: 73  GGGVLVSLKKDVDSVRASPKTPLSWSGGSGSGGGSASPSADGFEDNSRQASCSTSTGSGS 132

Query: 152 ------------MKRPRKKKTLGELKEEEVLLLKERRSLK 165
                        KR +K+K+  ELK EE L LKER  L+
Sbjct: 133 KVFPTNEITSCFSKRLKKRKSSFELKNEENLKLKERLDLE 167

[Close]
BLAST of CmaCh08G005980 vs. TAIR 10
Match: AT5G25210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G32030.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 56.6 bits (135), Expect = 3.7e-08
Identity = 40/120 (33.33%), Postives = 68/120 (56.67%), Query Frame = 0 

Query: 29  MSDDKWVDVALSDDSLVVDLLLRLNRSPLV-NPLSPPLRLDWSIRQPRSKPILPRQASDS 88
           +S D W   A+ D  +V +LL++L  + ++ NP+   LR  W I+QPRS+   PR+ S+S
Sbjct: 2   VSSDDWTKCAMRDGEVVAELLVKLKEAKVIKNPIVTALR--WGIQQPRSR--CPRKESES 61

Query: 89  AGKNSDEAARASPTTPLTWSSG-GGATSVSGGFVDAVRSKN------AGKSEAVATMKRP 141
                    R SP+TPL+WS G GG++S   G+VD   + +        +S+ +++++ P
Sbjct: 62  ---------RCSPSTPLSWSGGCGGSSSSPSGYVDGYEATSRQISAVGSRSKNISSLRSP 108

The following BLAST results are available for this feature:
BLAST of CmaCh08G005980 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh08G005980 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G80610.14.5e-2241.29unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15800.14.2e-2039.89unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G32030.15.7e-1734.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G32030.21.3e-1040.63unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G25210.13.7e-0833.33unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..111
NoneNo IPR availablePANTHERPTHR35099:SF10BNAA06G10500D PROTEINcoord: 29..270
NoneNo IPR availablePANTHERPTHR35099OS02G0182700 PROTEINcoord: 29..270

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G005980.1CmaCh08G005980.1mRNA