CmaCh08G005910 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005910
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Caldesmon-like isoform X2
Location	Cma_Chr08: 3364006 .. 3370714 (-)
RNA-Seq Expression	CmaCh08G005910
Synteny	CmaCh08G005910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGTTCATAAGTTGAATGTGGTCACACTCGCATTGAACCAGTGCTAAGTAATCAGCGCCAAAAACGAAGCCAAAAGGCGCCAAGGGAAAAAGAGAACGAACATGAAACGAGGGAAAAAGAATTGAACTTTATCGGATTTGAAGCCCCAAGAATGAACCAAAATTGATTCCAAGCGACAAATCCGAAACTACCCATTATTCTTCAACTCCCTATTTGCATGCTCGAAACACCTTTGAAGAAGACGTAGCTGTGGTTTCTATGAGTCATTTCGAGGACTGAATTGAAATTTTGGATATGAGCTCGTCTGAGAAAGAGCTCGAGGAGCAGCTTAAGGAGGTCGGGACTGAGCTCCTAAACCCTCCTCCTTCCACTGATGCGCTTCTCAAAGCTCTCGATGTAAGGATGCGATTCTACTCTCTTCTCTTTTACACTGCTCATTTCGCCTCTTGTTATGCATAATTTTTCTGGGTTTTCGTTAATTTACATGAATTTCAAACGAGATTTTATGGTTTTCACTCGAGCAACCACCTGTTCTTATCTCTTCATGCCTCGATATGAATTGGGGGTACGAAAGATTACGCCTCTTTCCCTTACGCTTTTCGAAGATTTTAAGGTTTTCTGCAATTTACATTTGCTTACCAAGAAAATATTGAGTCAATACTCTAGTAAGACTCGTAGAGTAATAGGGGGAATTCTTGCAAGGTAATTGCCCCATTAGGCCTTCGTGATAGATGCGGTATACCTTGACATAGAACACTGCTCACTGTTCATCTGCCTGCCACCAAATTCTTTGCTACTTTTTACATGAAGGGTAAGTTTATTATGATTTTTGGGATCCAGCCAACTAAAAACATGTTCTAAACCTGAAATGGTGTTAGGGGAAGCGTTTAATTAGAGTTCATTGCAAAAGTTTTCCTCTAGGAGTTGATTTCGTTCAGGATATGCGTTCCGTTCCCCCTCGGGGTAGATAGTCTGATTATGTGTAACTTCTGTCCCAATTTTGTTCAGAAAGCTGAGTGTCTATTAACAAATGTGGAGCAATCGCCAACGAAATCTATGCGTGATGCACTCCTGCCCTTGATGAAAGCATTAGTTTCCGATAAGCTTATGAAGCACTCAGACGAGGATGTCAAGGTCACCGTAACATCCTGCATTACCGAAATAACAAGAATTACAGCGCCAGATGCCCCTTACGATGATGAGAAAATGAAGGTAACTTTGAAGCTGCTCATTCTCGACATGCATGTTCTGGTGGATTTTTTAGTTATCTCTTCGATTTCCACTGGTGCAGGTTACTTTTCAGTTGACTTTAGAAGCTTTTAGAAAGTTGTCACATATGTCGGGTCGTTGTTATACAAAGGCTTTATCCATTCTTGACGCTGTTGCAAAGGTCCGTTCGTGCTTAGTGATGCTGGATCTGGAGTGTGACAGTTTGATTCTCGAGATGATCCAGAGTTTTCTAAAGATCATTAGGTATCTTAATTTCTTCTCCAATTAGTTTCATGGTAGTTCATAAAACTTTCTTTTCGTGCAATTTTAACTTCGATTTCTTGATGTTATGTTTCTGATATTCTAAATTTTATTTTGTTCATCTAATCTTGATTTATTTTCTCCAAATTCTAAGGTCCAACCATCCACCTGCTGTTTTTTCAGCCATGGAAGCAATTATGACTAATGTGTTAGATGAGAGTGAAGAAATCTCATCGGATCTTCTCAGGCCTATTTTAGTTAGTGTCCGAAAGGAAAATCAGGTATCTCCCTTGTTTCTTATTCCTAACTTTATTTCTTTTATATTATCCTCGATTAATCGGTTCGCCTGTTATTATAGGAAGCAGGTTCTATTTCGTGGAAATTGGGAGAAAAGGTCATGTCCAACTGTGCTACTAAGCTCCAGCCTTATCTTATGGGTGCAATTCAGTCTCTCGGTGCTTCGTTGGATGACTATGCTCCTATAGTTGTTTCTATATGCCTAAATGGAACGGTTAACATTGATGCTGGGAATCATTTGGTGAGTTCTACCGACTAATACTGAAAGATGTTTGAATTGGTACTGTTGAGAACGGTTATATATAGATGAATTGCCTCATACGGTTAATATGTGTGAGATCTCACATCGGTTGGAGAGGAGAACAAAGCATTCTTTATAAGGGTGTGGAAACCTCTCCCGAGTAGATGCGTTTTAAAAACCTTAAGGGGAAACCCGAAAGGGAAAGCCTAAAGAGGTCAATATCTGCTAGCGGTGGGTTTGGGCTGTTACAAATGGTATCAAAGCCAAACAATTGGCGATGTGTCAGCAAAGAGGTTGAACCCTGAATGAGTGTGGACACGAGGTGGTGTGCCAGCAAGGACGTTGGGCCTTGAAGGGGGTGGACTGGGGGGTCACACATCGATTGGAGAAGGGAACAAGTGCTAGCGAGGACGCTGGGCCCCGAAGGGGGGTGGATTGTGAGATCCCATATTAGTTGGGGAGGAGAACACGGCCATTACAACGTTTGCTTAAGAATATATAGTTACTCGACACAGTCTTGTGCTCATGGGCATCAAGCTCCAAGAATAAATGCCTCGGTTATTTTGTTAGAAGAGCCACATAAGCAACCCGATGTCTTAACCTAAATATATGTATAGGGCCGAACCCCATGCCTCTTCAGTCATCGTATTATCTTTGAAACTAACTAAACTTCATGTCAGGTCTTGATGAGATGATCCTTTATGAAACTGCTTTTATGATGTTTTATTGAATGATTCAGGAAAATGGAAAGAGCAAAGAGACGACGATGAATTCAAACGAGCCAACACCGGTATGTGTTTGTATCTATATGTTATCCAATCTCTTCTGATCCCACACCCTAAAAATAATCTACATTAGCCGCTTCCGGAGTGAAATATCATAAAACTAATATATATTCACGCCAAATAGGCGACAGAGAGGCATACACCAAATGCAAGTATTGAAGAGAATCCTCAAACTGATGCTGCTTCAGAATCATTGTTATCCAATGGTATAGATGCAGCCAAGAATGACAACATAATCAAGGCGTCCTCGAGAAAATCACGAAAACAAAGTAAGCAATCAAAAACAACAGAAGCTGAAAAACCTGACAGTTTAGACTCTGTACCAAAGAAACGAGGCAGGAAACCGAACTCCTTAATGAATCCAGATGAAGGCTATGATCATTATTGGATTGGAAAAGGACGGGAAAAGTTCAGGCTATCCAATCGCAGAAAGTCTAATGTCGAAGAAACTAATTTTTCTCCTGTAAGACGAAAAGTAAGAAAGGTTTCTTTGTCAACAGAGGTAGAAAAAGAGTCTTCACATGCTGAAGAGAAATGTACACGATCTGAAAACGAAGCGGTTAATGAGAACATGAAAAAGGAAGAAAAAGCTCAGGCGAGTTCGAGGAAATCTAAAGTTGGTAAGGCTCGGAAGGATAAAGGAACTAAATTTTCTTCCGTAAGCCAAGGTGAAAAGGCTTCTTTGTTGACAAAGGTAGACGAGGAGTCCTCTGCACATGCTGAAGAGAAACATATACAATCGGAAGACGAAGTGGTGAACGAGAACAAGAAAAAGACAGAAAAAAAAGCTCAGGCGAGTTCGAGGAAATCTAAAGTTGGCAAGTCTAGGAAGAAAAAAGTACCTAAATTTGCCTCTGTAAGCCCAAGACTCGAAACGGCTTCTTTGTCAACAGAGGTAGAAAAGGAGTCTTCCACACATGCTGAAGAGAAATGTATACGATCTGAAGACGAAGTGGTAAACAAGACCATGAAAACGATGGAAGAAAAGGCTCCGGCAAGGTCAAGGAAATCTAAAGTTGTTGAATCCGAGAAGGATAAAACAACCCTCGATCCTGGATGTGTTGTTTCAGAAGATACTTCCGATGACAAGGAAAAACGATCAGTGCATTTGGTTATGAAGTTGAGAGCAAAGAGCACCGATGGGGATGAATCAGCAGACCGAAAGGGTGTTATCGTGAAATCTCCAGATACTAATATGGATAGAAATGTTCATAAATCATCAACCTGTGAGGTACCACGAAAATTTCTTTGCTACCTATTCATTTACTAAAAATCTGTCGTCTTTATTCTTCTGGTGCACCGCTTTATGGCATCTCTACATGTTCTTGTCCACTTAATAGGTGAAGGATTCGAGATCTGCCAAGTTAGACGACGATGATTATTCGGAAGAAACGGTTTCTTCCCAGGAAAAAGCTACAAGGAAGCATGTCATTGTGGAAAATGAGGTAAGAATTTCATAGTTTCCCTTTGTCTTGTAAATTGAAAGCACCTCATACTTTGATGATTCGAGATTAAGATATTTTTTTCAAATTTATTCTTGTGATGTCTGCTAACTCGTATTATCGACGTTCGTTTCAGGTAATAGACATATTAAGTGCTGGAGAGGAACTGGTTGGTAGGAGAATAAAGGTTTGGTGGCCCCTTGACCGGAAGTGAGTAACCCTTTATTTATTTTTTCCCGACGAAGTTGTTTATGACTTGCTCCGTTAAAGTAACCCAATCGTCGAGCTTTTAATACCAACTTCGAAATGAAATGCTGTGGACACCATGGTTGTGCTTTATGTAGTATCCTGCAACTTTCCATGTTTATGGGAGAATGGTGTTATGGTGTACTTTGTAGTGCTTTCTCTAGTTGAGAGTAGAGTCACGAGGGTGCACAGTCTAAAATAGTGAAACCGTGACATGTTGCATGTGCACACAAGTATTAGGATCGCACAATAACATACACACTCGATCAAGATGAACACAAAGAACATGAGAGAAAATTCAAGGAGGAATATTGGCTAAAGGTTTTATTGATGATCATACACCAAGAGAGAATGCAAAGAATGAAGAAACGTTTTGAAAGCACTCCCTAATAGGGTACATATATATGGTTTCAGTTTACTAAATATTAGTTTTAACAGATTTAATGACCTACGAAATATAATCTACCAAATATCTCTACTAGATCTTTATGAAATATTTATCATATATATAGTCGTCGGGCTCCATATCCCTACAACAAGAACCAAAGGAACCGAGGAAAGTTGTAATCTCGAGGCCTCGGGCTATCAGGTGCTTGCTTCTTGGCTACCCTGAACATGTCAGGGTATATATTTTGGCATTCAGCCGATAAGAGACGCGTAAATAGTCGGGATGTCATATTGGGGGAGGATGAAACTAATTGGGGGTGGAGAATTAGCAAGGGCGATACCTTGCACAACGTCTGCTAAAACCCGACATTTACGAACTTAAAACTCCTTATTTCTTTGCTTTGCAGGTTTTATGAAGGCATTATTCAAAGTTTTGACCCTGTTAAGAGAAAGCACAAGGCAAGATAACCCTATCCTTCCCTCAACCATTTTATAACCAGTTCATATCATGAACAGCTTCACTTCACATATAACCACACCTTTGGTTTTGGGTTTCGGGTTTCGGGTTTTGGTTTTCGGGTTTCGGGTTTACCTTTCTTGTCTTCGACTGTTTCATTTTTCTGTAGTTTCTGAATCTTTTTTATTTTTCATAGGTGTCGTATGATGATGGTGACGAAGAACTATTGAACCTCAAAAAGCAAAAATATGAGCTAATTGGAGTGGGTGTCTCACTTTTAACTATTTTAGCATATTTCCATGAGTTTTGTATTGCCATTTAAATTTGATTTCTCCTACTTTTCAATGTTATCCTGATGCAGGATGAGCATATGGGTGTCCCGAAATCCGAAGCTTCGTCGGATATGTAAGCTTCGTTCTTACATAATCATAATTCGCTATAGAAATTTGTTCGTTTTAGCATCTGGAATCAAAGTGACCTGAATGTTAACTAGTCGTTCGGTTTTATATTGTTGTGATTGAGTTTTGTTTTGATTTAGCGTAGACCTCAAAAGAGGAAAGGGAAAATCAAGTCGGAATCGAACAAGAATGAAAAGACCAGTTTTCCAGCCAAAAGGTTGCTACTTGCTTGCTTGTCATTTGTTTACTTGTTTCGTTTCACATTCTTATTTGGCCTTCAAGTTCTATCAAATTTTCATGGAATTATAGGGGTAGACCCAGGAAGAAACCTCAAGTTGAATCAGCAAAGTCAACCGAGAAAGCTGCCGATACTTCCATGCTCAAGAAACCTGTTATTACCGATGAATCAATGGACGATTCTGGGAGCATCGACAATGGTTCGAAAGGAAATGATAAAAAGCTTATAGATCTGATAGAAAACAATAGACTAAGGATTAGCTTAAAGTCGAAGCTGACTGCTGGCCGGGATTAACCCTTGGAAACGAAGCAGAACCTCTGGATTAAGAATTTAGCAGTATTAGAGGTACGAGTCGTCGTCATCATACCATCGTTTTGGGCGTTAGGAAAGACCATAGATCAGCTTAGTTCCTTTGTTTGTGTCATTAGAAGTAGAAAAGAAAAACAGTCTTTGATCTAACCAGTCTTGTAAACAGTACAGCCATCATATATAAACACCTCCATGCGTAAATCAGTTGCAGAATGATAGCAAAAGCAGACAGTTTTGTGTCGAAGCTTGACCTTTCTGACGTGCAGATAATGTAAGTTATGATATTTGATATACATTGACAGATCCTATGCTGAATCGGGTTCGTTTCTGTACCAAAATTTGGAGCTTTAAGTTCGACGACGTCTTAAAGCTTCGTTTTTTAACGAACCCGGAACATTAGTTCTTTCTTTCTTGCTGAATTGCCCACCTAGATTGGTAT

mRNA sequence

CAGTTCATAAGTTGAATGTGGTCACACTCGCATTGAACCAGTGCTAAGTAATCAGCGCCAAAAACGAAGCCAAAAGGCGCCAAGGGAAAAAGAGAACGAACATGAAACGAGGGAAAAAGAATTGAACTTTATCGGATTTGAAGCCCCAAGAATGAACCAAAATTGATTCCAAGCGACAAATCCGAAACTACCCATTATTCTTCAACTCCCTATTTGCATGCTCGAAACACCTTTGAAGAAGACGTAGCTGTGGTTTCTATGAGTCATTTCGAGGACTGAATTGAAATTTTGGATATGAGCTCGTCTGAGAAAGAGCTCGAGGAGCAGCTTAAGGAGGTCGGGACTGAGCTCCTAAACCCTCCTCCTTCCACTGATGCGCTTCTCAAAGCTCTCGATAAAGCTGAGTGTCTATTAACAAATGTGGAGCAATCGCCAACGAAATCTATGCGTGATGCACTCCTGCCCTTGATGAAAGCATTAGTTTCCGATAAGCTTATGAAGCACTCAGACGAGGATGTCAAGGTCACCGTAACATCCTGCATTACCGAAATAACAAGAATTACAGCGCCAGATGCCCCTTACGATGATGAGAAAATGAAGGTTACTTTTCAGTTGACTTTAGAAGCTTTTAGAAAGTTGTCACATATGTCGGGTCGTTGTTATACAAAGGCTTTATCCATTCTTGACGCTGTTGCAAAGGTCCGTTCGTGCTTAGTGATGCTGGATCTGGAGTGTGACAGTTTGATTCTCGAGATGATCCAGAGTTTTCTAAAGATCATTAGGTCCAACCATCCACCTGCTGTTTTTTCAGCCATGGAAGCAATTATGACTAATGTGTTAGATGAGAGTGAAGAAATCTCATCGGATCTTCTCAGGCCTATTTTAGTTAGTGTCCGAAAGGAAAATCAGGAAGCAGGTTCTATTTCGTGGAAATTGGGAGAAAAGGTCATGTCCAACTGTGCTACTAAGCTCCAGCCTTATCTTATGGGTGCAATTCAGTCTCTCGGTGCTTCGTTGGATGACTATGCTCCTATAGTTGTTTCTATATGCCTAAATGGAACGGTTAACATTGATGCTGGGAATCATTTGGAAAATGGAAAGAGCAAAGAGACGACGATGAATTCAAACGAGCCAACACCGGCGACAGAGAGGCATACACCAAATGCAAGTATTGAAGAGAATCCTCAAACTGATGCTGCTTCAGAATCATTGTTATCCAATGGTATAGATGCAGCCAAGAATGACAACATAATCAAGGCGTCCTCGAGAAAATCACGAAAACAAAGTAAGCAATCAAAAACAACAGAAGCTGAAAAACCTGACAGTTTAGACTCTGTACCAAAGAAACGAGGCAGGAAACCGAACTCCTTAATGAATCCAGATGAAGGCTATGATCATTATTGGATTGGAAAAGGACGGGAAAAGTTCAGGCTATCCAATCGCAGAAAGTCTAATGTCGAAGAAACTAATTTTTCTCCTGTAAGACGAAAAGTAAGAAAGGTTTCTTTGTCAACAGAGGTAGAAAAAGAGTCTTCACATGCTGAAGAGAAATGTACACGATCTGAAAACGAAGCGGTTAATGAGAACATGAAAAAGGAAGAAAAAGCTCAGGCGAGTTCGAGGAAATCTAAAGTTGGTAAGGCTCGGAAGGATAAAGGAACTAAATTTTCTTCCGTAAGCCAAGGTGAAAAGGCTTCTTTGTTGACAAAGGTAGACGAGGAGTCCTCTGCACATGCTGAAGAGAAACATATACAATCGGAAGACGAAGTGGTGAACGAGAACAAGAAAAAGACAGAAAAAAAAGCTCAGGCGAGTTCGAGGAAATCTAAAGTTGGCAAGTCTAGGAAGAAAAAAGTACCTAAATTTGCCTCTGTAAGCCCAAGACTCGAAACGGCTTCTTTGTCAACAGAGGTAGAAAAGGAGTCTTCCACACATGCTGAAGAGAAATGTATACGATCTGAAGACGAAGTGGTAAACAAGACCATGAAAACGATGGAAGAAAAGGCTCCGGCAAGGTCAAGGAAATCTAAAGTTGTTGAATCCGAGAAGGATAAAACAACCCTCGATCCTGGATGTGTTGTTTCAGAAGATACTTCCGATGACAAGGAAAAACGATCAGTGCATTTGGTTATGAAGTTGAGAGCAAAGAGCACCGATGGGGATGAATCAGCAGACCGAAAGGGTGTTATCGTGAAATCTCCAGATACTAATATGGATAGAAATGTTCATAAATCATCAACCTGTGAGGTGAAGGATTCGAGATCTGCCAAGTTAGACGACGATGATTATTCGGAAGAAACGGTTTCTTCCCAGGAAAAAGCTACAAGGAAGCATGTCATTGTGGAAAATGAGGTAATAGACATATTAAGTGCTGGAGAGGAACTGGTTGGTAGGAGAATAAAGGTTTGGTGGCCCCTTGACCGGAAGTTTTATGAAGGCATTATTCAAAGTTTTGACCCTGTTAAGAGAAAGCACAAGGTGTCGTATGATGATGGTGACGAAGAACTATTGAACCTCAAAAAGCAAAAATATGAGCTAATTGGAGATGAGCATATGGGTGTCCCGAAATCCGAAGCTTCGTCGGATATACCTCAAAAGAGGAAAGGGAAAATCAAGTCGGAATCGAACAAGAATGAAAAGACCAGTTTTCCAGCCAAAAGGGGTAGACCCAGGAAGAAACCTCAAGTTGAATCAGCAAAGTCAACCGAGAAAGCTGCCGATACTTCCATGCTCAAGAAACCTGTTATTACCGATGAATCAATGGACGATTCTGGGAGCATCGACAATGGTTCGAAAGGAAATGATAAAAAGCTTATAGATCTGATAGAAAACAATAGACTAAGGATTAGCTTAAAGTCGAAGCTGACTGCTGGCCGGGATTAACCCTTGGAAACGAAGCAGAACCTCTGGATTAAGAATTTAGCAGTATTAGAGGTACGAGTCGTCGTCATCATACCATCGTTTTGGGCGTTAGGAAAGACCATAGATCAGCTTAGTTCCTTTGTTTGTGTCATTAGAAGTAGAAAAGAAAAACAGTCTTTGATCTAACCAGTCTTGTAAACAGTACAGCCATCATATATAAACACCTCCATGCGTAAATCAGTTGCAGAATGATAGCAAAAGCAGACAGTTTTGTGTCGAAGCTTGACCTTTCTGACGTGCAGATAATGTAAGTTATGATATTTGATATACATTGACAGATCCTATGCTGAATCGGGTTCGTTTCTGTACCAAAATTTGGAGCTTTAAGTTCGACGACGTCTTAAAGCTTCGTTTTTTAACGAACCCGGAACATTAGTTCTTTCTTTCTTGCTGAATTGCCCACCTAGATTGGTAT

Coding sequence (CDS)

ATGAGCTCGTCTGAGAAAGAGCTCGAGGAGCAGCTTAAGGAGGTCGGGACTGAGCTCCTAAACCCTCCTCCTTCCACTGATGCGCTTCTCAAAGCTCTCGATAAAGCTGAGTGTCTATTAACAAATGTGGAGCAATCGCCAACGAAATCTATGCGTGATGCACTCCTGCCCTTGATGAAAGCATTAGTTTCCGATAAGCTTATGAAGCACTCAGACGAGGATGTCAAGGTCACCGTAACATCCTGCATTACCGAAATAACAAGAATTACAGCGCCAGATGCCCCTTACGATGATGAGAAAATGAAGGTTACTTTTCAGTTGACTTTAGAAGCTTTTAGAAAGTTGTCACATATGTCGGGTCGTTGTTATACAAAGGCTTTATCCATTCTTGACGCTGTTGCAAAGGTCCGTTCGTGCTTAGTGATGCTGGATCTGGAGTGTGACAGTTTGATTCTCGAGATGATCCAGAGTTTTCTAAAGATCATTAGGTCCAACCATCCACCTGCTGTTTTTTCAGCCATGGAAGCAATTATGACTAATGTGTTAGATGAGAGTGAAGAAATCTCATCGGATCTTCTCAGGCCTATTTTAGTTAGTGTCCGAAAGGAAAATCAGGAAGCAGGTTCTATTTCGTGGAAATTGGGAGAAAAGGTCATGTCCAACTGTGCTACTAAGCTCCAGCCTTATCTTATGGGTGCAATTCAGTCTCTCGGTGCTTCGTTGGATGACTATGCTCCTATAGTTGTTTCTATATGCCTAAATGGAACGGTTAACATTGATGCTGGGAATCATTTGGAAAATGGAAAGAGCAAAGAGACGACGATGAATTCAAACGAGCCAACACCGGCGACAGAGAGGCATACACCAAATGCAAGTATTGAAGAGAATCCTCAAACTGATGCTGCTTCAGAATCATTGTTATCCAATGGTATAGATGCAGCCAAGAATGACAACATAATCAAGGCGTCCTCGAGAAAATCACGAAAACAAAGTAAGCAATCAAAAACAACAGAAGCTGAAAAACCTGACAGTTTAGACTCTGTACCAAAGAAACGAGGCAGGAAACCGAACTCCTTAATGAATCCAGATGAAGGCTATGATCATTATTGGATTGGAAAAGGACGGGAAAAGTTCAGGCTATCCAATCGCAGAAAGTCTAATGTCGAAGAAACTAATTTTTCTCCTGTAAGACGAAAAGTAAGAAAGGTTTCTTTGTCAACAGAGGTAGAAAAAGAGTCTTCACATGCTGAAGAGAAATGTACACGATCTGAAAACGAAGCGGTTAATGAGAACATGAAAAAGGAAGAAAAAGCTCAGGCGAGTTCGAGGAAATCTAAAGTTGGTAAGGCTCGGAAGGATAAAGGAACTAAATTTTCTTCCGTAAGCCAAGGTGAAAAGGCTTCTTTGTTGACAAAGGTAGACGAGGAGTCCTCTGCACATGCTGAAGAGAAACATATACAATCGGAAGACGAAGTGGTGAACGAGAACAAGAAAAAGACAGAAAAAAAAGCTCAGGCGAGTTCGAGGAAATCTAAAGTTGGCAAGTCTAGGAAGAAAAAAGTACCTAAATTTGCCTCTGTAAGCCCAAGACTCGAAACGGCTTCTTTGTCAACAGAGGTAGAAAAGGAGTCTTCCACACATGCTGAAGAGAAATGTATACGATCTGAAGACGAAGTGGTAAACAAGACCATGAAAACGATGGAAGAAAAGGCTCCGGCAAGGTCAAGGAAATCTAAAGTTGTTGAATCCGAGAAGGATAAAACAACCCTCGATCCTGGATGTGTTGTTTCAGAAGATACTTCCGATGACAAGGAAAAACGATCAGTGCATTTGGTTATGAAGTTGAGAGCAAAGAGCACCGATGGGGATGAATCAGCAGACCGAAAGGGTGTTATCGTGAAATCTCCAGATACTAATATGGATAGAAATGTTCATAAATCATCAACCTGTGAGGTGAAGGATTCGAGATCTGCCAAGTTAGACGACGATGATTATTCGGAAGAAACGGTTTCTTCCCAGGAAAAAGCTACAAGGAAGCATGTCATTGTGGAAAATGAGGTAATAGACATATTAAGTGCTGGAGAGGAACTGGTTGGTAGGAGAATAAAGGTTTGGTGGCCCCTTGACCGGAAGTTTTATGAAGGCATTATTCAAAGTTTTGACCCTGTTAAGAGAAAGCACAAGGTGTCGTATGATGATGGTGACGAAGAACTATTGAACCTCAAAAAGCAAAAATATGAGCTAATTGGAGATGAGCATATGGGTGTCCCGAAATCCGAAGCTTCGTCGGATATACCTCAAAAGAGGAAAGGGAAAATCAAGTCGGAATCGAACAAGAATGAAAAGACCAGTTTTCCAGCCAAAAGGGGTAGACCCAGGAAGAAACCTCAAGTTGAATCAGCAAAGTCAACCGAGAAAGCTGCCGATACTTCCATGCTCAAGAAACCTGTTATTACCGATGAATCAATGGACGATTCTGGGAGCATCGACAATGGTTCGAAAGGAAATGATAAAAAGCTTATAGATCTGATAGAAAACAATAGACTAAGGATTAGCTTAAAGTCGAAGCTGACTGCTGGCCGGGATTAA

Protein sequence

MSSSEKELEEQLKEVGTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMKALVSDKLMKHSDEDVKVTVTSCITEITRITAPDAPYDDEKMKVTFQLTLEAFRKLSHMSGRCYTKALSILDAVAKVRSCLVMLDLECDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTNVLDESEEISSDLLRPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYLMGAIQSLGASLDDYAPIVVSICLNGTVNIDAGNHLENGKSKETTMNSNEPTPATERHTPNASIEENPQTDAASESLLSNGIDAAKNDNIIKASSRKSRKQSKQSKTTEAEKPDSLDSVPKKRGRKPNSLMNPDEGYDHYWIGKGREKFRLSNRRKSNVEETNFSPVRRKVRKVSLSTEVEKESSHAEEKCTRSENEAVNENMKKEEKAQASSRKSKVGKARKDKGTKFSSVSQGEKASLLTKVDEESSAHAEEKHIQSEDEVVNENKKKTEKKAQASSRKSKVGKSRKKKVPKFASVSPRLETASLSTEVEKESSTHAEEKCIRSEDEVVNKTMKTMEEKAPARSRKSKVVESEKDKTTLDPGCVVSEDTSDDKEKRSVHLVMKLRAKSTDGDESADRKGVIVKSPDTNMDRNVHKSSTCEVKDSRSAKLDDDDYSEETVSSQEKATRKHVIVENEVIDILSAGEELVGRRIKVWWPLDRKFYEGIIQSFDPVKRKHKVSYDDGDEELLNLKKQKYELIGDEHMGVPKSEASSDIPQKRKGKIKSESNKNEKTSFPAKRGRPRKKPQVESAKSTEKAADTSMLKKPVITDESMDDSGSIDNGSKGNDKKLIDLIENNRLRISLKSKLTAGRD

Homology

[Close]

BLAST of CmaCh08G005910 vs. ExPASy Swiss-Prot
Match: Q5U241 (Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis OX=8355 GN=pds5b-b PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-13
Identity = 63/270 (23.33%), Postives = 131/270 (48.52%), Query Frame = 0


Query: 16  GTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMKALVSDKLMKHSDEDV 75
           G + ++   S + +++ L        +++Q  ++  ++  L L   L SD  +KH D+DV
Sbjct: 18  GVKEISDKISKEEMVRRLKMVVKTFMDMDQD-SEEEKEQYLNLALHLASDFFLKHPDKDV 77

Query: 76  KVTVTSCITEITRITAPDAPY-DDEKMKVTFQLTLEAFRKLSHMSGRCYTKALSILDAVA 135
           ++ V  C+ +I RI AP+APY   +K+K  F       + L       + +   +L+ +A
Sbjct: 78  RLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIA 137

Query: 136 KVRSCLVMLDLE-CDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTNVLDESEEISSDLL 195
            V+S  +  +LE C+ +  ++ ++   +I + H   V   M  +M++++ E + +S +LL
Sbjct: 138 WVKSYNICFELEDCNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIVCEGDTVSQELL 197

Query: 196 RPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYL---MGAIQSLG-ASLDDYAPIVV 255
             +LV++   ++     ++ L + ++   A  ++PY+      +  LG  S+ D +  V 
Sbjct: 198 DSVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVF 257

Query: 256 SICLNGTVNIDAGNHLENGKSKETTMNSNE 280
            + L    NID+   L      E  + SN+
Sbjct: 258 DLILE-LYNIDSHLLLSVLPQLEFKLKSND 285

[Close]

BLAST of CmaCh08G005910 vs. ExPASy Swiss-Prot
Match: Q5F3U9 (Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus OX=9031 GN=PDS5B PE=2 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-12
Identity = 62/270 (22.96%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 16  GTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMKALVSDKLMKHSDEDV 75
           G + ++   S + +++ L        +++Q  ++  ++  L L   L SD  +KH D+DV
Sbjct: 18  GVKEISDKISKEEMVRRLKMVVKTFMDMDQD-SEEEKELYLNLALHLASDFFLKHPDKDV 77

Query: 76  KVTVTSCITEITRITAPDAPY-DDEKMKVTFQLTLEAFRKLSHMSGRCYTKALSILDAVA 135
           ++ V  C+ +I RI AP+APY   +K+K  F       + L       + +   +L+ +A
Sbjct: 78  RLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIA 137

Query: 136 KVRSCLVMLDLE-CDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTNVLDESEEISSDLL 195
            V+S  +  +LE  + +  ++ ++   +I + H   V   M  +M++++ E + +S +LL
Sbjct: 138 WVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELL 197

Query: 196 RPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYL---MGAIQSLG-ASLDDYAPIVV 255
             +LV++   ++     ++ L + ++   A  ++PY+      +  LG  S+ D +  V 
Sbjct: 198 DTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVF 257

Query: 256 SICLNGTVNIDAGNHLENGKSKETTMNSNE 280
            + L    NID+   L      E  + SN+
Sbjct: 258 DLILE-LYNIDSHLLLSVLPQLEFKLKSND 285

[Close]

BLAST of CmaCh08G005910 vs. ExPASy Swiss-Prot
Match: Q9NTI5 (Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens OX=9606 GN=PDS5B PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-12
Identity = 62/270 (22.96%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 16  GTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMKALVSDKLMKHSDEDV 75
           G + ++   S + +++ L        +++Q  ++  ++  L L   L SD  +KH D+DV
Sbjct: 18  GVKEISDKISKEEMVRRLKMVVKTFMDMDQD-SEEEKELYLNLALHLASDFFLKHPDKDV 77

Query: 76  KVTVTSCITEITRITAPDAPY-DDEKMKVTFQLTLEAFRKLSHMSGRCYTKALSILDAVA 135
           ++ V  C+ +I RI AP+APY   +K+K  F       + L       + +   +L+ +A
Sbjct: 78  RLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIA 137

Query: 136 KVRSCLVMLDLE-CDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTNVLDESEEISSDLL 195
            V+S  +  +LE  + +  ++ ++   +I + H   V   M  +M++++ E + +S +LL
Sbjct: 138 WVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELL 197

Query: 196 RPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYL---MGAIQSLG-ASLDDYAPIVV 255
             +LV++   ++     ++ L + ++   A  ++PY+      +  LG  S+ D +  V 
Sbjct: 198 DTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVF 257

Query: 256 SICLNGTVNIDAGNHLENGKSKETTMNSNE 280
            + L    NID+   L      E  + SN+
Sbjct: 258 DLILE-LYNIDSHLLLSVLPQLEFKLKSND 285

[Close]

BLAST of CmaCh08G005910 vs. ExPASy Swiss-Prot
Match: Q4VA53 (Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus OX=10090 GN=Pds5b PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-12
Identity = 62/270 (22.96%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 16  GTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMKALVSDKLMKHSDEDV 75
           G + ++   S + +++ L        +++Q  ++  ++  L L   L SD  +KH D+DV
Sbjct: 18  GVKEISDKISKEEMVRRLKMVVKTFMDMDQD-SEEEKELYLNLALHLASDFFLKHPDKDV 77

Query: 76  KVTVTSCITEITRITAPDAPY-DDEKMKVTFQLTLEAFRKLSHMSGRCYTKALSILDAVA 135
           ++ V  C+ +I RI AP+APY   +K+K  F       + L       + +   +L+ +A
Sbjct: 78  RLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIA 137

Query: 136 KVRSCLVMLDLE-CDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTNVLDESEEISSDLL 195
            V+S  +  +LE  + +  ++ ++   +I + H   V   M  +M++++ E + +S +LL
Sbjct: 138 WVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELL 197

Query: 196 RPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYL---MGAIQSLG-ASLDDYAPIVV 255
             +LV++   ++     ++ L + ++   A  ++PY+      +  LG  S+ D +  V 
Sbjct: 198 DTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVF 257

Query: 256 SICLNGTVNIDAGNHLENGKSKETTMNSNE 280
            + L    NID+   L      E  + SN+
Sbjct: 258 DLILE-LYNIDSHLLLSVLPQLEFKLKSND 285

[Close]

BLAST of CmaCh08G005910 vs. ExPASy Swiss-Prot
Match: Q6TRW4 (Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus OX=10116 GN=Pds5b PE=1 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 1.9e-12
Identity = 62/270 (22.96%), Postives = 130/270 (48.15%), Query Frame = 0


Query: 16  GTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMKALVSDKLMKHSDEDV 75
           G + ++   S + +++ L        +++Q  ++  ++  L L   L SD  +KH D+DV
Sbjct: 18  GVKEISDKISKEEMVRRLKMVVKTFMDMDQD-SEEEKELYLNLALHLASDFFLKHPDKDV 77

Query: 76  KVTVTSCITEITRITAPDAPY-DDEKMKVTFQLTLEAFRKLSHMSGRCYTKALSILDAVA 135
           ++ V  C+ +I RI AP+APY   +K+K  F       + L       + +   +L+ +A
Sbjct: 78  RLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYFYLLENIA 137

Query: 136 KVRSCLVMLDLE-CDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTNVLDESEEISSDLL 195
            V+S  +  +LE  + +  ++ ++   +I + H   V   M  +M++++ E + +S +LL
Sbjct: 138 WVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGDTVSQELL 197

Query: 196 RPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYL---MGAIQSLG-ASLDDYAPIVV 255
             +LV++   ++     ++ L + ++   A  ++PY+      +  LG  S+ D +  V 
Sbjct: 198 DTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSISDLSEHVF 257

Query: 256 SICLNGTVNIDAGNHLENGKSKETTMNSNE 280
            + L    NID+   L      E  + SN+
Sbjct: 258 DLILE-LYNIDSHLLLSVLPQLEFKLKSND 285

[Close]

BLAST of CmaCh08G005910 vs. TAIR 10
Match: AT4G31880.1 (LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink). )

HSP 1 Score: 302.4 bits (773), Expect = 1.2e-81
Identity = 287/876 (32.76%), Postives = 433/876 (49.43%), Query Frame = 0


Query: 1   MSSSEKELEEQLKEVGTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMK 60
           MS S+KELE Q+ E G +L++PP S D LL  LDK    L  VEQSP  SM++AL PLMK
Sbjct: 1   MSDSDKELENQIIEAGEKLIDPPSSLDELLSFLDKLFVSLAEVEQSPPDSMQNALTPLMK 60

Query: 61  ALVSDKLMKHSDEDVKVTVTSCITEITRITAPDAPYDDEKMKVTFQLTLEAFRKLSHMSG 120
            LV  KL KHSD DVKV V +CI+EITRITAPDAPYDD++MK  F+L + +F  L   S 
Sbjct: 61  GLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSS 120

Query: 121 RCYTKALSILDAVAKVRSCLVMLDLECDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTN 180
           R Y K +SIL+ VAKVRSC+VMLDLECD+L++EM Q FLK IR +H   VFS+ME IMT 
Sbjct: 121 RSYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIMTL 180

Query: 181 VLDESEEISSDLLRPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYLMGAIQSLGAS 240
           VL+ESE+I S++L PIL SV+K++ E   +S +L E+V+SNCA+KL+ YL  A++S G  
Sbjct: 181 VLEESEDIPSEMLSPILHSVKKDD-EISQVSRRLAEQVLSNCASKLKTYLTEAVKSSGVP 240

Query: 241 LDDYAPIVVSICLNGTVNIDAGNHLENGK--SKETTMNSNEPTPATERHTPNASIEENPQ 300
           LD Y+ IV SIC      +     + N K  S+       E   A E  TP  +   +  
Sbjct: 241 LDKYSNIVASICEGTFSALQQDQVVANEKEDSQGHIKRETEVEKAAEISTPERT---DAP 300

Query: 301 TDAASESLLSNGIDAAKNDNIIKASSRKSRKQSKQSKTTEAEKPDSLDSVPKKRGRKPNS 360
            D + +S +SNG+ A +ND+ +   S K     KQ  T   ++P  LD+ P+       +
Sbjct: 301 KDESGKSGVSNGV-AQQNDSSVDTDSMK-----KQDDTGAKDEPQQLDN-PRNTDLNNTT 360

Query: 361 LMNPDEGYDHYWIGKGREKFRLSNRRKSNVEETNFSPVRRKVRKVSLSTEVEKESSHAEE 420
              PD                     +  +EE        K   +S  +++++E+  AE 
Sbjct: 361 EEKPDV--------------------EHQIEEKENESSSVKQADLSKDSDIKEETEPAEL 420

Query: 421 KCTRS--ENEAVNENMKKEEKAQASSRKSKVGKARKDKGTKFSSVSQGEKASLLTKVDEE 480
             ++    +  V+ ++     ++    KS      K  G + ++VS    A  L +    
Sbjct: 421 LDSKDVLTSPPVDSSVTAATSSENEKNKSVQILPSKTSGDETANVSSPSMAEELPEQSVP 480

Query: 481 SSAHAEEKHIQSEDEVVNENKKKTEK-KAQASSRKSKVGKSRKKKVPKFASVSPRLETAS 540
                ++K   S +EV       TE+   + ++ + +V K   KKV   +   P +  + 
Sbjct: 481 KKTANQKKKESSTEEVKPSASIATEEVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSK 540

Query: 541 LSTEVEKESSTHAEEKCIRSEDEVVNKTMKTMEEKAPARSRKSKVVESEKDKTTLDPGCV 600
            ST  E + +  +E+K + S D     T    E+K P R    K ++ E   T       
Sbjct: 541 KSTS-ETKVAKQSEKKVVGS-DNAQESTKPKEEKKKPGR---GKAIDEESLHT------- 600

Query: 601 VSEDTSDDKEKRSVHLVMKLRAKSTDGDESADRKGVIVKSPDTNMDRNVHKSSTCEVKDS 660
               +S D EK +V    KL +KS       + K  + +SP++N  R   K S  + K  
Sbjct: 601 ----SSGDNEKPAVS-SGKLASKS-----KKEAKQTVEESPNSNTKR---KRSLGQGK-- 660

Query: 661 RSAKLDDDDYSEETVSSQEKATRKHVIVENEVIDILSAGEELVGRRIKVWWPLDRKFYEG 720
                                               ++GE LVG RIKVWWP+D+ +Y+G
Sbjct: 661 ------------------------------------ASGESLVGSRIKVWWPMDQAYYKG 720

Query: 721 IIQSFDPVKRKHKVSYDDGDEELLNLKKQKY------ELIGDEHMG--VPKSEASSDIPQ 780
           +++S+D  K+KH V YDDGD+E+L LK QK+      EL  DE       + E +S +P 
Sbjct: 721 VVESYDAAKKKHLVIYDDGDQEILYLKNQKWSPLDESELSQDEEAADQTGQEEDASTVPL 780

Query: 781 KRKGKIKSESNKNEKTSFPAKRGRPRKKPQVESAKSTEKAADTSMLKKPVITDESM--DD 840
            +K K   +S  +  ++         K     ++KS++ + D     K   + E+   ++
Sbjct: 781 TKKAKTGKQSKMDNSSAKKGSGAGSSKAKATPASKSSKTSQDDKTASKSKDSKEASREEE 782

Query: 841 SGSIDNGSKGNDKKLIDLIENNRLRISLKSKLTAGR 862
           + S +   +    K +    ++R +  + S   +G+
Sbjct: 841 ASSEEESEEEEPPKTVGKSGSSRSKKDISSVSKSGK 782

[Close]

BLAST of CmaCh08G005910 vs. TAIR 10
Match: AT4G31880.2 (LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1). )

HSP 1 Score: 300.8 bits (769), Expect = 3.5e-81
Identity = 286/876 (32.65%), Postives = 437/876 (49.89%), Query Frame = 0


Query: 1   MSSSEKELEEQLKEVGTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMK 60
           MS S+KELE Q+ E G +L++PP S D LL  LDK    L  VEQSP  SM++AL PLMK
Sbjct: 1   MSDSDKELENQIIEAGEKLIDPPSSLDELLSFLDKLFVSLAEVEQSPPDSMQNALTPLMK 60

Query: 61  ALVSDKLMKHSDEDVKVTVTSCITEITRITAPDAPYDDEKMKVTFQLTLEAFRKLSHMSG 120
            LV  KL KHSD DVKV V +CI+EITRITAPDAPYDD++MK  F+L + +F  L   S 
Sbjct: 61  GLVGGKLFKHSDVDVKVAVAACISEITRITAPDAPYDDDQMKEVFKLIVSSFEDLVDKSS 120

Query: 121 RCYTKALSILDAVAKVRSCLVMLDLECDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTN 180
           R Y K +SIL+ VAKVRSC+VMLDLECD+L++EM Q FLK IR +H   VFS+ME IMT 
Sbjct: 121 RSYAKRISILETVAKVRSCVVMLDLECDALLIEMFQHFLKAIRDHHSGNVFSSMENIMTL 180

Query: 181 VLDESEEISSDLLRPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYLMGAIQSLGAS 240
           VL+ESE+I S++L PIL SV+K++ E   +S +L E+V+SNCA+KL+ YL  A++S G  
Sbjct: 181 VLEESEDIPSEMLSPILHSVKKDD-EISQVSRRLAEQVLSNCASKLKTYLTEAVKSSGVP 240

Query: 241 LDDYAPIVVSICLNGTVNIDAGNHLENGKSKETTMNSNEPT--PATERHTPNASIEENPQ 300
           LD Y+ IV SIC  GT +    + +   + +++  +    T   A E  TP  +   +  
Sbjct: 241 LDKYSNIVASIC-EGTFSALQQDQVVANEKEDSQGHIKRETEVEAAEISTPERT---DAP 300

Query: 301 TDAASESLLSNGIDAAKNDNIIKASSRKSRKQSKQSKTTEAEKPDSLDSVPKKRGRKPNS 360
            D + +S +SNG+ A +ND+ +   S K     KQ  T   ++P  LD+ P+       +
Sbjct: 301 KDESGKSGVSNGV-AQQNDSSVDTDSMK-----KQDDTGAKDEPQQLDN-PRNTDLNNTT 360

Query: 361 LMNPDEGYDHYWIGKGREKFRLSNRRKSNVEETNFSPVRRKVRKVSLSTEVEKESSHAEE 420
              PD                     +  +EE        K   +S  +++++E+  AE 
Sbjct: 361 EEKPDV--------------------EHQIEEKENESSSVKQADLSKDSDIKEETEPAEL 420

Query: 421 KCTRS--ENEAVNENMKKEEKAQASSRKSKVGKARKDKGTKFSSVSQGEKASLLTKVDEE 480
             ++    +  V+ ++     ++    KS      K  G + ++VS    A  L +    
Sbjct: 421 LDSKDVLTSPPVDSSVTAATSSENEKNKSVQILPSKTSGDETANVSSPSMAEELPEQSVP 480

Query: 481 SSAHAEEKHIQSEDEVVNENKKKTEK-KAQASSRKSKVGKSRKKKVPKFASVSPRLETAS 540
                ++K   S +EV       TE+   + ++ + +V K   KKV   +   P +  + 
Sbjct: 481 KKTANQKKKESSTEEVKPSASIATEEVSEEPNTSEPQVTKKSGKKVASSSKTKPTVPPSK 540

Query: 541 LSTEVEKESSTHAEEKCIRSEDEVVNKTMKTMEEKAPARSRKSKVVESEKDKTTLDPGCV 600
            ST  E + +  +E+K + S D     T    E+K P R    K ++ E   T       
Sbjct: 541 KSTS-ETKVAKQSEKKVVGS-DNAQESTKPKEEKKKPGR---GKAIDEESLHT------- 600

Query: 601 VSEDTSDDKEKRSVHLVMKLRAKSTDGDESADRKGVIVKSPDTNMDRNVHKSSTCEVKDS 660
               +S D EK +V    KL +KS       + K  + +SP++N  R   K S  + K  
Sbjct: 601 ----SSGDNEKPAVS-SGKLASKS-----KKEAKQTVEESPNSNTKR---KRSLGQGK-- 660

Query: 661 RSAKLDDDDYSEETVSSQEKATRKHVIVENEVIDILSAGEELVGRRIKVWWPLDRKFYEG 720
                                               ++GE LVG RIKVWWP+D+ +Y+G
Sbjct: 661 ------------------------------------ASGESLVGSRIKVWWPMDQAYYKG 720

Query: 721 IIQSFDPVKRKHKVSYDDGDEELLNLKKQKY------ELIGDEHMG--VPKSEASSDIPQ 780
           +++S+D  K+KH V YDDGD+E+L LK QK+      EL  DE       + E +S +P 
Sbjct: 721 VVESYDAAKKKHLVIYDDGDQEILYLKNQKWSPLDESELSQDEEAADQTGQEEDASTVPL 780

Query: 781 KRKGKIKSESNKNEKTSFPAKRGRPRKKPQVESAKSTEKAADTSMLKKPVITDESM--DD 840
            +K K   +S  +  ++         K     ++KS++ + D     K   + E+   ++
Sbjct: 781 TKKAKTGKQSKMDNSSAKKGSGAGSSKAKATPASKSSKTSQDDKTASKSKDSKEASREEE 781

Query: 841 SGSIDNGSKGNDKKLIDLIENNRLRISLKSKLTAGR 862
           + S +   +    K +    ++R +  + S   +G+
Sbjct: 841 ASSEEESEEEEPPKTVGKSGSSRSKKDISSVSKSGK 781

[Close]

BLAST of CmaCh08G005910 vs. TAIR 10
Match: AT1G15940.1 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 283.1 bits (723), Expect = 7.5e-76
Identity = 278/870 (31.95%), Postives = 414/870 (47.59%), Query Frame = 0


Query: 1   MSSSEKELEEQLKEVGTELLNPPPSTDALLKALDKAECLLTNVEQSPTKSMRDALLPLMK 60
           + ++E   E+ L +    LL P  STDA L  L+  E LL  VEQ  + S++ AL P M+
Sbjct: 5   VEATEFSKEQALTDAAENLLKPHFSTDATLSLLEVMESLLATVEQDLSSSVQKALHPPMR 64

Query: 61  ALVSDKLMKHSDEDVKVTVTSCITEITRITAPDAPYDDEKMKVTFQLTLEAFRKLSHMSG 120
           ALVS  L+++ D DV+V+V SC+TEI RITAP+APY+DE+MK  FQ+T+EAF KL+  S 
Sbjct: 65  ALVSADLLRNPDSDVRVSVVSCLTEIMRITAPEAPYNDEQMKDIFQVTIEAFEKLADASS 124

Query: 121 RCYTKALSILDAVAKVRSCLVMLDLECDSLILEMIQSFLKIIRSNHPPAVFSAMEAIMTN 180
           R Y KA  IL+ VAKVRS LVMLDLECD L+LEM Q FLKIIR +HP  V  +ME IM  
Sbjct: 125 RSYRKAEVILETVAKVRSSLVMLDLECDDLVLEMFQRFLKIIRPDHPQLVLVSMETIMIT 184

Query: 181 VLDESEEISSDLLRPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYLMGAIQSLGAS 240
           V+DESEE+  DLL  +L +V+K++Q+    +  L EKV+S+C  KLQP +M A++S G S
Sbjct: 185 VIDESEEVPMDLLEILLTTVKKDSQDVSPAALTLVEKVLSSCTCKLQPCIMEALKSSGTS 244

Query: 241 LDDYAPIVVSICLNGTVNIDAGNHLENGKSKETTMNSNEPTPATERHTPNASIEEN---- 300
           LD Y+P+V SIC +      A N +   K K+   N  +   +  +  P+ S+E+     
Sbjct: 245 LDMYSPVVSSICQSEFATTQAHNDV---KPKD---NEADEKISEGQVVPSDSLEDKLNLG 304

Query: 301 -PQTDAASESLLSNGIDAAKNDNIIKASSRKSRKQSKQSKTTEAEKPDSLDSVPKKRGRK 360
             +    S+     G   A  D  +  ++         S++T+AE   +     +KRG K
Sbjct: 305 LSRKGTRSKRSARGGTRRANGDEKVITAN------EGLSESTDAE---TASGSTRKRGWK 364

Query: 361 PNSLMNPDEGYDHYWIGKGREKFRLSNRRKSNVEETNFSPVRR-KVRKVSLSTEVEKESS 420
           P SLMNP+EGY           F+ S+ +K   +E   S + +   +KV L ++V +   
Sbjct: 365 PKSLMNPEEGY----------SFKTSSSKKVQEKELGDSSLGKVAAKKVPLPSKVGQ--- 424

Query: 421 HAEEKCTRSENEAVNENMKKEEKAQASSRKSKVGKARKDKGTKFSSVSQGEKASLLTKVD 480
                     N++V  ++    +A+  SRK    K  +      S  +Q  K   + K +
Sbjct: 425 ---------TNQSVVISLSSSGRARTGSRKRSRTKMEETDHDVSSVATQPAKKQTVKKTN 484

Query: 481 EESSAHAEEKHIQSEDEVVNENKKKTEKKAQASSRKSKVGKSRKKKVPKFASVSPRLETA 540
                        +++++   N KK E          K GKS KK               
Sbjct: 485 ------------PAKEDLTKSNVKKHEDGI-------KTGKSSKK--------------- 544

Query: 541 SLSTEVEKESSTHAEEKCIRSEDEVVNKTMKTMEEKAPARSRKSKVVESEKDKTTLDPGC 600
                 EK  +  A+               K + E    +    K+V S+  K       
Sbjct: 545 ------EKADNGLAK-----------TSAKKPLAETMMVKPSGKKLVHSDAKK------- 604

Query: 601 VVSEDTSDDKEKRSVHLVMKLRAKSTDGDESADRKGVIVKSPDTNMDRNVHKSSTCEVKD 660
                                  K+++G                +MD  + +SS  + KD
Sbjct: 605 -----------------------KNSEG---------------ASMDTPIPQSSKSKKKD 664

Query: 661 SRSAKLDDDDYSEETVSSQEKATRKHVIVENEVIDILSAGEELVGRRIKVWWPLDRKFYE 720
           SR A       SE+   S  K   K +  E    +    GEELVG+R+ VWWPLD+KFYE
Sbjct: 665 SR-ATTPATKKSEQAPKSHPK--MKRIAGEEVESNTNELGEELVGKRVNVWWPLDKKFYE 724

Query: 721 GIIQSFDPVKRKHKVSYDDGDEELLNLKKQKYELIGDEHMGVPKSEASSDIPQKRKGKIK 780
           G+I+S+  VK+ H+V+Y DGD E LNLKK+++++I D+       +   D+ +       
Sbjct: 725 GVIKSYCRVKKMHQVTYSDGDVEELNLKKERFKIIEDKSSA--SEDKEDDLLESTPLSAF 736

Query: 781 SESNKNEKTSFPAKRGRPRKKPQVESAKSTEKAAD--TSMLKKPVITDESMDDSGSIDNG 840
            +  K++K    +K   P   P+V S+  T K  D  T  +K+   T  ++    +    
Sbjct: 785 IQREKSKKRKIVSKNVEPSSSPEVRSSMQTMKKKDSVTDSIKQTKRTKGALKAVSNEPES 736

Query: 841 SKGND----KKLIDLIENNRLRISLKSKLT 859
           + G +    KKL    +  R R   K K+T
Sbjct: 845 TTGKNLKSLKKLNGEPDKTRGRTGKKQKVT 736

[Close]

BLAST of CmaCh08G005910 vs. TAIR 10
Match: AT1G80810.1 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 263.5 bits (672), Expect = 6.1e-70
Identity = 244/767 (31.81%), Postives = 367/767 (47.85%), Query Frame = 0


Query: 51  MRDALLPLMKALVSDKLMKHSDEDVKVTVTSCITEITRITAPDAPYDDEKMKVTFQLTLE 110
           M+ AL+P   ALVS  L+ H D DV+V+V SC+TEI RITAP+ PY D+ MK  F+LT+E
Sbjct: 1   MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60

Query: 111 AFRKLSHMSGRCYTKALSILDAVAKVRSCLVMLDLECDSLILEMIQSFLKIIRSNHPPAV 170
           AF KL+  S R Y KA  +LD VAKV+SCLVMLDLEC  LIL+M ++F K IRS+HP  V
Sbjct: 61  AFEKLADASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLV 120

Query: 171 FSAMEAIMTNVLDESEEISSDLLRPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYL 230
           FS+ME IM  ++DE+E++S+DLL  +L +V+KENQ    +SW L EKV+S CA KL+PY+
Sbjct: 121 FSSMELIMIAIIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYI 180

Query: 231 MGAIQSLGASLDDYAPIVVSICLNGTVNIDAGNHLENGKSKETTMNSNEPTPATERHTPN 290
           + A++S G SLD Y+P+V SIC     N    +   N K  E  ++       + +   +
Sbjct: 181 IEALKSRGTSLDMYSPVVSSIC-QSVFNTPKVHSPVNTKEHEEKLDLGH----SRKENLS 240

Query: 291 ASIEENPQTDAASESLLSNGIDAAKNDNIIKASSRKSRKQSKQSKTTEAEKPDSLDSVPK 350
            S  + P   A  E+   N  +  +N N  K+S  K   +  +S++T+AE       +  
Sbjct: 241 KSSSKRP---ARHETRGINEKEKVRNGN--KSSLLKQSLKQVRSESTDAE-------ITG 300

Query: 351 KRGRKPNSLMNPDEGYDHYWIGKGREKFRLSNRRKSNVEETNFSPVRRKVRKVSLSTEVE 410
           KRGRKPNSLMNP E YD  W+   R+  + S+ +K  +++     V    +  +  T + 
Sbjct: 301 KRGRKPNSLMNP-EDYDISWLSGKRDPLKTSSNKK--IQKKGSGGVSSLGKVPAKKTPLP 360

Query: 411 KESSHAEEKCTRSENEAVNENMKKEEKAQASSRKSKVGKARKDKGTKFSSVSQGEKASLL 470
           KE+S                         A+S +S  G  ++ +  K         +   
Sbjct: 361 KENS------------------------PATSSRSLTGSLKRSR-VKMDESDYDSDSLSS 420

Query: 471 TKVDEESSAHAEEKHIQSEDEVVNENKKKTEKKAQASSRKSKVGKSRKKKVPKFASVSPR 530
            ++ + +S   +E+  Q +D  +  + K+T         +SK G  + +K  K   V   
Sbjct: 421 PRLKKLASCFRDEEPNQEDDRKIGNSSKQT---------RSKNGLEKSQKTAKKKPV--- 480

Query: 531 LETASLSTEVEKESSTHAEEKCIRSEDEVVNKTMKTMEEKAPARSRKSKVVESEKDKTTL 590
                                    E ++VN + K +  ++ A+ R  +    +    TL
Sbjct: 481 ------------------------VEAKIVNSSGKRLSARSVAKRRNLERAPLD----TL 540

Query: 591 DPGCVVSEDTSDDKEKRSVHLVMKLRAKSTDGDESADRKGVIVKSPDTNMDRNVHKSSTC 650
            P           K K+ V  V                                      
Sbjct: 541 VP--------QSSKRKKMVSQV-------------------------------------- 600

Query: 651 EVKDSRSAKLDDDDYSEETVSSQEKATRKHVIVENEVIDILSAGEELVGRRIKVWWPLDR 710
                 +A+   ++  EET  S     R    V  EV D    GE+LVG+R+ +WWPLD+
Sbjct: 601 ------AARQLANESEEETPKSHPTRRR---TVRKEVSD--GFGEDLVGKRVNIWWPLDK 625

Query: 711 KFYEGIIQSFDPVKRKHKVSYDDGDEELLNLKKQKYELIGDE-------HMGVPKSEASS 770
            FYEG+I S+   K+ H+V Y DGD E LNL ++++EL+ D+        + +P+S   S
Sbjct: 661 TFYEGVIDSYCTRKKMHRVIYSDGDSEELNLTEERWELLEDDTSADEDKEIDLPESIPLS 625

Query: 771 DIPQKRK-GKIKSESNKNEKTSFPAKRGRPRKKPQVESAKSTEKAAD 810
           DI Q++K  K K+ +   E TS    R   R   + +  K   K  +
Sbjct: 721 DIMQRQKVKKSKNVAVSVEPTSSSGVRSSSRTLMKKDCGKRLNKQVE 625

[Close]

BLAST of CmaCh08G005910 vs. TAIR 10
Match: AT1G80810.2 (Tudor/PWWP/MBT superfamily protein )

HSP 1 Score: 263.1 bits (671), Expect = 8.0e-70
Identity = 244/768 (31.77%), Postives = 367/768 (47.79%), Query Frame = 0


Query: 51  MRDALLPLMKALVSDKLMKHSDEDVKVTVTSCITEITRITAPDAPYDDEKMKVTFQLTLE 110
           M+ AL+P   ALVS  L+ H D DV+V+V SC+TEI RITAP+ PY D+ MK  F+LT+E
Sbjct: 1   MQSALIPSRNALVSVDLLSHPDSDVRVSVVSCLTEIVRITAPETPYSDDLMKEIFRLTIE 60

Query: 111 AFRKLSHMSGRCYTKALSILDAVAKVRSCLVMLDLECDSLILEMIQSFLKIIRSNHPPAV 170
           AF KL+  S R Y KA  +LD VAKV+SCLVMLDLEC  LIL+M ++F K IRS+HP  V
Sbjct: 61  AFEKLADASSRSYKKAEFVLDNVAKVKSCLVMLDLECYDLILQMFRNFFKFIRSDHPQLV 120

Query: 171 FSAMEAIMTNVLDESEEISSDLLRPILVSVRKENQEAGSISWKLGEKVMSNCATKLQPYL 230
           FS+ME IM  ++DE+E++S+DLL  +L +V+KENQ    +SW L EKV+S CA KL+PY+
Sbjct: 121 FSSMELIMIAIIDETEQVSTDLLDSLLATVKKENQNVSPMSWSLAEKVLSRCARKLKPYI 180

Query: 231 MGAIQSLGASLDDYAPIVVSICLNGTVNIDAGNHLENGKSKETTMNSNEPTPATERHTPN 290
           + A++S G SLD Y+P+V SIC     N    +   N K  E  ++       + +   +
Sbjct: 181 IEALKSRGTSLDMYSPVVSSIC-QSVFNTPKVHSPVNTKEHEEKLDLGH----SRKENLS 240

Query: 291 ASIEENPQTDAASESLLSNGIDAAKNDNIIKASSRKSRKQSKQSKTTEAEKPDSLDSVPK 350
            S  + P   A  E+   N  +  +N N  K+S  K   +  +S++T+AE       +  
Sbjct: 241 KSSSKRP---ARHETRGINEKEKVRNGN--KSSLLKQSLKQVRSESTDAE-------ITG 300

Query: 351 KRGRKPNSLMNPDEGYDHYWIGKGREKFRLSNRRKSNVEETNFSPVRRKVRKVSLSTEVE 410
           KRGRKPNSLMNP E YD  W+   R+  + S+ +K  +++     V    +  +  T + 
Sbjct: 301 KRGRKPNSLMNP-EDYDISWLSGKRDPLKTSSNKK--IQKKGSGGVSSLGKVPAKKTPLP 360

Query: 411 KESSHAEEKCTRSENEAVNENMKKEEKAQASSRKSKVGKARKDKGTKFSSVSQGEKASLL 470
           KE+S                         A+S +S  G  ++ +  K         +   
Sbjct: 361 KENS------------------------PATSSRSLTGSLKRSR-VKMDESDYDSDSLSS 420

Query: 471 TKVDEESSAHAEEKHIQSEDEVVNENKKKTEKKAQASSRKSKVGKSRKKKVPKFASVSPR 530
            ++ + +S   +E+  Q +D  +  + K+T         +SK G  + +K  K   V   
Sbjct: 421 PRLKKLASCFRDEEPNQEDDRKIGNSSKQT---------RSKNGLEKSQKTAKKKPV--- 480

Query: 531 LETASLSTEVEKESSTHAEEKCIRSEDEVVNKTMKTMEEKAPARSRKSKVVESEKDKTTL 590
                                    E ++VN + K +  ++ A+ R  +    +    TL
Sbjct: 481 ------------------------VEAKIVNSSGKRLSARSVAKRRNLERAPLD----TL 540

Query: 591 DPGCVVSEDTSDDKEKRSVHLVMKLRAKSTDGDESADRKGVIVKSPDTNMDRNVHKSSTC 650
            P           K K+ V  V                                      
Sbjct: 541 VP--------QSSKRKKMVSQV-------------------------------------- 600

Query: 651 EVKDSRSAKLDDDDYSEETVSSQEKATRKHVIVENEVIDILSAGEELVGRRIKVWWPLDR 710
                 +A+   ++  EET  S     R    V  EV D    GE+LVG+R+ +WWPLD+
Sbjct: 601 ------AARQLANESEEETPKSHPTRRR---TVRKEVSD--GFGEDLVGKRVNIWWPLDK 626

Query: 711 KFYEGIIQSFDPVKRKHKVSYDDGDEELLNLKKQKYELIGDE--------HMGVPKSEAS 770
            FYEG+I S+   K+ H+V Y DGD E LNL ++++EL+ D+         + +P+S   
Sbjct: 661 TFYEGVIDSYCTRKKMHRVIYSDGDSEELNLTEERWELLEDDTSADEQDKEIDLPESIPL 626

Query: 771 SDIPQKRK-GKIKSESNKNEKTSFPAKRGRPRKKPQVESAKSTEKAAD 810
           SDI Q++K  K K+ +   E TS    R   R   + +  K   K  +
Sbjct: 721 SDIMQRQKVKKSKNVAVSVEPTSSSGVRSSSRTLMKKDCGKRLNKQVE 626

The following BLAST results are available for this feature:

BLAST of CmaCh08G005910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5U241	1.8e-13	23.33	Sister chromatid cohesion protein PDS5 homolog B-B OS=Xenopus laevis OX=8355 GN=...	[more]
Q5F3U9	1.9e-12	22.96	Sister chromatid cohesion protein PDS5 homolog B OS=Gallus gallus OX=9031 GN=PDS...	[more]
Q9NTI5	1.9e-12	22.96	Sister chromatid cohesion protein PDS5 homolog B OS=Homo sapiens OX=9606 GN=PDS5...	[more]
Q4VA53	1.9e-12	22.96	Sister chromatid cohesion protein PDS5 homolog B OS=Mus musculus OX=10090 GN=Pds...	[more]
Q6TRW4	1.9e-12	22.96	Sister chromatid cohesion protein PDS5 homolog B OS=Rattus norvegicus OX=10116 G...	[more]

BLAST of CmaCh08G005910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G31880.1	1.2e-81	32.76	LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED D...	[more]
AT4G31880.2	3.5e-81	32.65	LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 gro...	[more]
AT1G15940.1	7.5e-76	31.95	Tudor/PWWP/MBT superfamily protein	[more]
AT1G80810.1	6.1e-70	31.81	Tudor/PWWP/MBT superfamily protein	[more]
AT1G80810.2	8.0e-70	31.77	Tudor/PWWP/MBT superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.30.30.140		coord: 694..745 e-value: 3.2E-11 score: 44.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 542..677
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..443
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..369
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 750..802
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..524
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 750..839
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 381..677
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..302
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 331..358
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 469..508
None	No IPR available	PANTHER	PTHR12663:SF37	SISTER CHROMATID COHESION PDS5-LIKE PROTEIN	coord: 6..455
None	No IPR available	PANTHER	PTHR12663:SF37	SISTER CHROMATID COHESION PDS5-LIKE PROTEIN	coord: 475..850
None	No IPR available	SUPERFAMILY	63748	Tudor/PWWP/MBT	coord: 696..738
IPR039776	Sister chromatid cohesion protein Pds5	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 475..850
IPR039776	Sister chromatid cohesion protein Pds5	PANTHER	PTHR12663	ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED	coord: 6..455
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 41..258

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005910.1	CmaCh08G005910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0007064	mitotic sister chromatid cohesion
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus