CmaCh08G005480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G005480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L6
Location	Cma_Chr08: 3137441 .. 3139760 (-)
RNA-Seq Expression	CmaCh08G005480
Synteny	CmaCh08G005480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGATAGGCGGAGGAGGGTATGGGTACGACGGCGGTGAAATGAAACTGATTTGAGAAGGATTTCGGCGGGTTTTGTGGAACTGTGGATGAGATTCGTTGGCGATAATACGGCAGAGATGGAAGCCATTTTTGGTCTGTAAAGCTTTGTGTTCCGAAGCGACAACAACAGAACCCTGAGGTGAGCGAGCCCAGCGGTTTATCCAGTCGGCATGAAGGTTCACACACGTGCTTACCGCACGTGCCATTCAATTTTTTTTTCCTTTTTTTAAGATAAATATAACCATATGCTCAATTTTTTTTAGTTGTTAAAAATAAACCTTTGATTGTTGTCATTTGGGCTTGGGCCCAAGCCCAAATTATCAAGAGCATCGAATTAGGGCTTGGGCCCAAGCCCAAACTACACGAGATTTGAATTAGGGCTTAGACCCAAGCCCAAACTATCAAGAGCATCGAATTAGGGCTTGGGCCCAAGCCCAAACTACACGAGATTCGAATTAGGGCTTAGACCCAAGCCCAAACTATCAAGAGCTTCGAATTAGGGCTTTTCCGAGAAAAAAAGAAACCCTAATATATGTTCCCTTTGTTGAATGATTAGGCTTTCTGGTGGTAGTTTCTTTCTCGTTGAAGAAGAGCAGCAGATTCTCGCAGGGATACGGTAATGGCGCCCAAAACCCCTAGAGTTACCAGAAACCCGGATCTAATCCGAGGCGTCGGTAAATACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGTGGAGTGTTCCCTCGTCATGATGCCCAGCCAAAAGCTGATGCCGCAGTCGAGAAGCCGCCGAAGTTTTATCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGACTCACGAAGCTAAGGTATGGCGACTTTGTTCGCTCGCTCAATTTATTATTATTATTTTGTTCTGTTTGATTTTTAGTGCTTTGAGGTCTTACTCTTATTCCGGTCGAGAAGCTTTGGGATTTGAAGATTGAGGTCTTACTTTAATTTTTTTCTATTTGTGATTCTAGAGCCAGCATTACTCCCGGTACCGTGTTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGTGAGTTCATTGCTTTCTGTCGTCTCTTATTTCTTCTATGTATTGTTTGCATTTTAGAAGTTTTCCTGTGATTTAGTTTGCTTTTTCTTGCGATTTAATTTTCTTTGCTGTCCTCTTTAATGGAAACGTTTGCCTTTACTTCGTCCTGTGAGTGCATTTGCTGAAGAACTTATTCTATTGCTTACTTTCGTTTAAAAATACCCAATGTTGATTAATTCTTTCTATTGCCCGTGATTTCAAATTGTATTAAAGCAAATAGTTGAAGCTCTATTCCTTATCTGTTTACTGGGAATTTGAATTTCTTAATGCTGAAGCTTGGATTTAATGTAACATTCTAGTTAATGTGAAACGCCACCTGAAGTCAGCTCTTGTTTTCTTATGAAAGTTGGTGTGCTTTTTAAGCATTACTGTAACATTTCCTTTATGACTATAGGGCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCGTACGTCATTGCAACCTCCACCAAAGTAGAATTCTCTGGCGTTAACACCGAGAAGTTCGACGACAAGTATTTCTCCAAGGAAGTTCAGAAGAAGAAGAAGAAGAGTGAAGGCGAGTTCTTCGAGGCAGAGAAAGAGGTACAAGGACCTGCATTGCACTTCTAAGATGCCCCATTGTCGCGTTGTTTAGCTGTCCTAATTATTTGATTCATACTTCTTATTCTAGGAGAAAAGTGCCCTCCCAGCTGACAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCGGAGTTGAAGGCGTACTTGGCAGCAAGATTTTCTCTCAAGTCTGGAATGAAACCTCATGAGCTTACCTTTTAGATAAGGGATTTGTTTGTTTTTTGTTCATCTGAACTTGTTCACGACTCGTTACAGTAGTTGCCTGTCCCAATTTTTTATTCGAAATGGAGATTCCATGGTTCACAGTTTCTCTCTTTCTTTTTGGAATACATACATGTATACATGTATACATATATACATACATATATATATATGTATGTATGTAGCATGATTTGTTTAATGTTCAAATAGGTTCCTTCGATTGGATTTCCTTTTTGAATTTCTTATGATATCTGACTATTAAGAAGTCTTTTTTGAAAATTATAGAACCTCCC

mRNA sequence

AGATAGGCGGAGGAGGGTATGGGTACGACGGCGGTGAAATGAAACTGATTTGAGAAGGATTTCGGCGGGTTTTGTGGAACTGTGGATGAGATTCGTTGGCGATAATACGGCAGAGATGGAAGCCATTTTTGGTCTGTAAAGCTTTGTGTTCCGAAGCGACAACAACAGAACCCTGAGGCTTTCTGGTGGTAGTTTCTTTCTCGTTGAAGAAGAGCAGCAGATTCTCGCAGGGATACGGTAATGGCGCCCAAAACCCCTAGAGTTACCAGAAACCCGGATCTAATCCGAGGCGTCGGTAAATACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGTGGAGTGTTCCCTCGTCATGATGCCCAGCCAAAAGCTGATGCCGCAGTCGAGAAGCCGCCGAAGTTTTATCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGACTCACGAAGCTAAGAGCCAGCATTACTCCCGGTACCGTGTTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGGCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCGTACGTCATTGCAACCTCCACCAAAGTAGAATTCTCTGGCGTTAACACCGAGAAGTTCGACGACAAGTATTTCTCCAAGGAAGTTCAGAAGAAGAAGAAGAAGAGTGAAGGCGAGTTCTTCGAGGCAGAGAAAGAGGAGAAAAGTGCCCTCCCAGCTGACAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCGGAGTTGAAGGCGTACTTGGCAGCAAGATTTTCTCTCAAGTCTGGAATGAAACCTCATGAGCTTACCTTTTAGATAAGGGATTTGTTTGTTTTTTGTTCATCTGAACTTGTTCACGACTCGTTACAGTAGTTGCCTGTCCCAATTTTTTATTCGAAATGGAGATTCCATGGTTCACAGTTTCTCTCTTTCTTTTTGGAATACATACATGTATACATGTATACATATATACATACATATATATATATGTATGTATGTAGCATGATTTGTTTAATGTTCAAATAGGTTCCTTCGATTGGATTTCCTTTTTGAATTTCTTATGATATCTGACTATTAAGAAGTCTTTTTTGAAAATTATAGAACCTCCC

Coding sequence (CDS)

ATGGCGCCCAAAACCCCTAGAGTTACCAGAAACCCGGATCTAATCCGAGGCGTCGGTAAATACTCGAGGTCTAAGATGTATCACAAGCGAGGTCTTTGGGCCATCAAGGCCAAAAACGGTGGAGTGTTCCCTCGTCATGATGCCCAGCCAAAAGCTGATGCCGCAGTCGAGAAGCCGCCGAAGTTTTATCCTGCCGATGATGTGAAGAAGCCCCTTGTTAACAAGCGCAAGGCCAGACTCACGAAGCTAAGAGCCAGCATTACTCCCGGTACCGTGTTGATTATCCTTGCTGGGAGATTCAAGGGGAAGAGAGTTGTGTTTTTGAAACAGCTGCCATCTGGGTTGCTTCTGGTCACTGGGCCTTTCAAGATTAATGGTGTTCCTCTAAGACGGGTGAACCAATCGTACGTCATTGCAACCTCCACCAAAGTAGAATTCTCTGGCGTTAACACCGAGAAGTTCGACGACAAGTATTTCTCCAAGGAAGTTCAGAAGAAGAAGAAGAAGAGTGAAGGCGAGTTCTTCGAGGCAGAGAAAGAGGAGAAAAGTGCCCTCCCAGCTGACAAGAAGGATGACCAGAAAGCTGTGGATACACCATTGATAAAGTCGATCGAGGGTGTTCCGGAGTTGAAGGCGTACTTGGCAGCAAGATTTTCTCTCAAGTCTGGAATGAAACCTCATGAGCTTACCTTTTAG

Protein sequence

MAPKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF

Homology

[Close]

BLAST of CmaCh08G005480 vs. ExPASy Swiss-Prot
Match: Q9FZ76 (60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 1.9e-103
Identity = 190/230 (82.61%), Postives = 205/230 (89.13%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAQPK DA VEKP K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEE 181
           FKINGVPLRRVNQ+YVI TSTK++ SGVNTEKFDDKYF K  +KKKKK+EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 232
           K  +P +KK+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHEL F
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of CmaCh08G005480 vs. ExPASy Swiss-Prot
Match: Q9C9C5 (60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 3.9e-101
Identity = 188/228 (82.46%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ SGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of CmaCh08G005480 vs. ExPASy Swiss-Prot
Match: P34091 (60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 4.3e-100
Identity = 183/228 (80.26%), Postives = 203/228 (89.04%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           + P V+RNP+L+RG+GKYSRSKMYHKRGLWAIKAKNGGVFP+H  +     AVEKPPKFY
Sbjct: 7   RKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFY 66

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PADDVKKPL+NKRK + TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 67  PADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFK 126

Query: 124 INGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           +NGVPLRRVNQ+YVIATSTKV+ SGVN EKFDDKYF K+ +KK KK EGEFFEAEK+E +
Sbjct: 127 VNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVN 186

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 232
            LP +KKDDQKAVD  L+K+IEGVPELKAYL ARFSLK+GMKPHEL F
Sbjct: 187 VLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234

[Close]

BLAST of CmaCh08G005480 vs. ExPASy Swiss-Prot
Match: Q9C9C6 (60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 7.3e-100
Identity = 186/228 (81.58%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ SGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of CmaCh08G005480 vs. ExPASy Swiss-Prot
Match: Q2YGT9 (60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3)

HSP 1 Score: 190.7 bits (483), Expect = 1.9e-47
Identity = 112/248 (45.16%), Postives = 154/248 (62.10%), Query Frame = 0


Query: 6   PRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKP------ 65
           P  +RNP L+RG+G+YSRS MY ++ L+  K            + +  A V KP      
Sbjct: 38  PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 97

Query: 66  -----------PKFYPADDVKKPLVNKRK----ARLTKLRASITPGTVLIILAGRFKGKR 125
                      P++YP +DV + L++  K      + KLRASITPGT+LIIL GR +GKR
Sbjct: 98  GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 157

Query: 126 VVFLKQLPSGLLLVTGPFKINGVPLRRVNQSYVIATSTKVEFSGVN-TEKFDDKYFSKEV 185
           V+FLKQL SGLLLVTGP  +N VPLRR +Q +VIATSTK++ SGV   E   D YF K+ 
Sbjct: 158 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 217

Query: 186 QKKKKKSEGEFFEAEKEEKSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSG 232
            +K +  EGE F+ EK EK  +   +K DQKAVD+ +++ I+ VP+L+ YL + F+L +G
Sbjct: 218 LRKPRHQEGEIFDTEK-EKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 277

[Close]

BLAST of CmaCh08G005480 vs. TAIR 10
Match: AT1G18540.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 376.7 bits (966), Expect = 1.3e-104
Identity = 190/230 (82.61%), Postives = 205/230 (89.13%), Query Frame = 0


Query: 2   APKTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPK 61
           A +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDAQPK DA VEKP K
Sbjct: 4   AKRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAK 63

Query: 62  FYPADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGP 121
           FYPA+DVKKPLVN+RK + TKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGP
Sbjct: 64  FYPAEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGP 123

Query: 122 FKINGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEE 181
           FKINGVPLRRVNQ+YVI TSTK++ SGVNTEKFDDKYF K  +KKKKK+EGEFFEAEKEE
Sbjct: 124 FKINGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEE 183

Query: 182 KSALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 232
           K  +P +KK+DQK VD  LIKSIE VPELK YL ARFSL  GMKPHEL F
Sbjct: 184 KKEIPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233

[Close]

BLAST of CmaCh08G005480 vs. TAIR 10
Match: AT1G74050.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 369.0 bits (946), Expect = 2.8e-102
Identity = 188/228 (82.46%), Postives = 202/228 (88.60%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +TP+V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+ TKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ SGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

[Close]

BLAST of CmaCh08G005480 vs. TAIR 10
Match: AT1G74060.1 (Ribosomal protein L6 family protein )

HSP 1 Score: 364.8 bits (935), Expect = 5.2e-101
Identity = 186/228 (81.58%), Postives = 200/228 (87.72%), Query Frame = 0


Query: 4   KTPRVTRNPDLIRGVGKYSRSKMYHKRGLWAIKAKNGGVFPRHDAQPKADAAVEKPPKFY 63
           +T +V RNPDLIRGVGKYSRS+MYHKRGLWAIKAKNGGVFPRHDA+ K DA VEKPPKFY
Sbjct: 6   RTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEKPPKFY 65

Query: 64  PADDVKKPLVNKRKARLTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVTGPFK 123
           PA+DVKKPL N+R A+  KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLVTGPFK
Sbjct: 66  PAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFK 125

Query: 124 INGVPLRRVNQSYVIATSTKVEFSGVNTEKFDDKYFSKEVQKKKKKSEGEFFEAEKEEKS 183
           INGVPLRRVNQ+YVI TSTKV+ SGV  +KFDDKYF K  +KKKKK+EGEFFEAEKEEK 
Sbjct: 126 INGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKK 185

Query: 184 ALPADKKDDQKAVDTPLIKSIEGVPELKAYLAARFSLKSGMKPHELTF 232
            +P  KKDDQKAVD  LIK+IE VPELK YL ARFSLK GMKPHEL F
Sbjct: 186 EIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233

The following BLAST results are available for this feature:

BLAST of CmaCh08G005480 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FZ76	1.9e-103	82.61	60S ribosomal protein L6-1 OS=Arabidopsis thaliana OX=3702 GN=RPL6A PE=2 SV=1	[more]
Q9C9C5	3.9e-101	82.46	60S ribosomal protein L6-3 OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1	[more]
P34091	4.3e-100	80.26	60S ribosomal protein L6 OS=Mesembryanthemum crystallinum OX=3544 GN=RPL6 PE=2 S...	[more]
Q9C9C6	7.3e-100	81.58	60S ribosomal protein L6-2 OS=Arabidopsis thaliana OX=3702 GN=RPL6B PE=2 SV=1	[more]
Q2YGT9	1.9e-47	45.16	60S ribosomal protein L6 OS=Sus scrofa OX=9823 GN=RPL6 PE=1 SV=3	[more]

BLAST of CmaCh08G005480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G18540.1	1.3e-104	82.61	Ribosomal protein L6 family protein	[more]
AT1G74050.1	2.8e-102	82.46	Ribosomal protein L6 family protein	[more]
AT1G74060.1	5.2e-101	81.58	Ribosomal protein L6 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000915	60S ribosomal protein L6E	PFAM	PF01159	Ribosomal_L6e	coord: 124..231 e-value: 6.6E-39 score: 132.9
IPR000915	60S ribosomal protein L6E	PANTHER	PTHR10715	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR000915	60S ribosomal protein L6E	PROSITE	PS01170	RIBOSOMAL_L6E	coord: 125..143
IPR005568	Ribosomal protein L6, N-terminal	PFAM	PF03868	Ribosomal_L6e_N	coord: 5..59 e-value: 8.2E-16 score: 58.0
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 85..169 e-value: 4.6E-17 score: 63.8
None	No IPR available	PANTHER	PTHR10715:SF9	60S RIBOSOMAL PROTEIN L6	coord: 1..231
IPR041997	Ribosomal Protein L6, KOW domain	CDD	cd13156	KOW_RPL6	coord: 79..231 e-value: 1.58808E-78 score: 230.898
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 85..173

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G005480.1	CmaCh08G005480.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0000027	ribosomal large subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome