CmaCh08G005130 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G005130
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPentatricopeptide repeat-containing protein
LocationCma_Chr08: 2956868 .. 2959595 (-)
RNA-Seq ExpressionCmaCh08G005130
SyntenyCmaCh08G005130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCACCTTCACAACGCCCCAATCTTCGGCTGGTTATCATTTCTCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTGTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCTCAAGAAGGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGTGCTGTTCTCGAGGCTCTTGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGGTTTTACGATCTTCTTCTTTAATCTTTTTTTTTTTTTTTTTTCCCTGTTTCTTCGTTTTCAATGCTTGGAACTGGTTGCTATGTAGCTAAGAATACTCTTCCTGACTTTGTTGGATTTATAAGTGAAGAATGTTGAATCACGGCTCTTAACGAAAGCTCTAAATCGATGAGTCAGGATATATTTAATCTTTAATTGCTTTGACACTCTTACGTATTCTTCATAGTGTATAAAATCATCAATCAACTCAAAAGTAAGTTCAATGAATTACAGTAAACTTAATCTTTTATTACGCGCTGATAATTTGAATATGAATGAAGTATTAATTCTATATGAATTGCGGCTAAAATGAACTATTTCCACTCTGTCATTGAGGAGAGATCACTCATCCAACTCCAATTCCATGCCTGATTGGTTACTTTTTTGTGAAATTCTAAGTGTTCTCAATATCCTTCCAGAAGTCTTTAGCACGGGAAGTTATGTAAATCTTAGGAAATGAAAGACTAAATGGAGAATCCTCCCAAACTGTAGAGGCTATACCTTTCTTCAGAAAATCTTTAGTTTTAGCAATCTCAACCTATTGGCCGAAACTTCTTCTTGTTGAGGATTATTGAAAAAAGTAGTCCCACGTTGGCTAATTAAGAGAAAAATCATGGGTTTATAAGTAAAGAATACATCTCCATTGGTATGAAGTCTTTTGGGGAAACCAAAAGCAAAGTCATTAGAGGTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGCCCGTGATTCCTAACACTTCTACCTGAAATTTCTCTCAGGATGGAATCAGGCTATCACTATTTGAGATGATATGTCACCGTACGATGTTCTCATGAAGAAAAAACCTCTATAGCTGTTTTGGTAAGAGAGGTGCATTTCTGTTTCTGATATCTCCCACTCCCAGCCTGCCCAAAGAGCCATGTTTGCTTTGTTTCTGCTTTCAGAACCCTTGCATCCCGTCTTGTTAGTGATCGCTTAAACCCATTTGAAATATTTCTCTGAGAAGGAGCTTCTGAAGAACTTCTTATTCAAGGGGTTATTACAAGAGCTTTCAAGGTAGCAGCTAACCAAACAACCTAGAATCCATCCAAAGAAGGCTCACATAGGTTTGAGAAATTTCTTTCCTTCATTTTTTTGAATTCAAATGAGAAAACAAAAAAATTGATACAGCATTTCCATGATGAAAATGAAAAAGCTCATTACTAATGAACTGATTTTACTGTCGTATTTCGACAATAAGAGTTATGGCCAAATAATTTTGTACATCTTTTCAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTAAGCAAGCAAGCTTGCTGTTTCAGATTATGTTATCCGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATTCCGTCGTCTTGACCTTCTGAAGGACATTCTTGCTGACATGTCTTATCTGGGGATTACATGTAATACGGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCCTATGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATCGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTATGACAAGATGGTGTCGGTTTTGAACTTCATGGAAAAACGCTTTTTCTCTCCGACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTAAGAGGATGGAAGAATACTTCAGAAAAATGAAATATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGGAAGAGAATAAATGTGTGCCTGATAGCATTACATTTGCTACAATGGTTCACGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCACTAGAGACGACAAGATAAATTAG

mRNA sequence

CCTTCACCTTCACAACGCCCCAATCTTCGGCTGGTTATCATTTCTCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTGTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCTCAAGAAGGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGTGCTGTTCTCGAGGCTCTTGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTAAGCAAGCAAGCTTGCTGTTTCAGATTATGTTATCCGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATTCCGTCGTCTTGACCTTCTGAAGGACATTCTTGCTGACATGTCTTATCTGGGGATTACATGTAATACGGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCCTATGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATCGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTATGACAAGATGGTGTCGGTTTTGAACTTCATGGAAAAACGCTTTTTCTCTCCGACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTAAGAGGATGGAAGAATACTTCAGAAAAATGAAATATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGGAAGAGAATAAATGTGTGCCTGATAGCATTACATTTGCTACAATGGTTCACGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCACTAGAGACGACAAGATAAATTAG

Coding sequence (CDS)

ATGGCTTCCATAAACCCCACTCCTTTGTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCTCAAGAAGGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGTGCTGTTCTCGAGGCTCTTGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTAAGCAAGCAAGCTTGCTGTTTCAGATTATGTTATCCGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATTCCGTCGTCTTGACCTTCTGAAGGACATTCTTGCTGACATGTCTTATCTGGGGATTACATGTAATACGGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCCTATGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATCGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTATGACAAGATGGTGTCGGTTTTGAACTTCATGGAAAAACGCTTTTTCTCTCCGACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTAAGAGGATGGAAGAATACTTCAGAAAAATGAAATATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGGAAGAGAATAAATGTGTGCCTGATAGCATTACATTTGCTACAATGGTTCACGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCACTAGAGACGACAAGATAAATTAG

Protein sequence

MASINPTPLFISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEAAQRLENKLIVTRDDKIN
Homology
BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 575.1 bits (1481), Expect = 7.0e-163
Identity = 275/435 (63.22%), Postives = 344/435 (79.08%), Query Frame = 0

Query: 11  ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
           + + R+ K+N  S   S   Q D KK LSRILR DAA++ IERKANS+KY  LWP AVLE
Sbjct: 6   VPNERTEKMN--SGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLE 65

Query: 71  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
           ALDEAI+EN W++ LKIF LLR+QHWYEPRCKTYTKL  +LG C+QP QASLLF++MLSE
Sbjct: 66  ALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSE 125

Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDL 190
           GLKP+IDVYT+L+S YG+S LL KA  T++ MKS+SDCKPDV T+++LI CC +  R DL
Sbjct: 126 GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDL 185

Query: 191 LKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFI 250
           +K I+ +MSYLG+ C+TVTYNTII+G+GKA MFE+MES+L +MIE G  LPD+ T NS I
Sbjct: 186 VKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSII 245

Query: 251 RAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFS 310
            +YGN   + KME WY+ FQLMG++PD  T+N +I S+GKA MY KM SV++FMEKRFFS
Sbjct: 246 GSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFS 305

Query: 311 PTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSI 370
            T VT N +I+ FG+AG I++M++ FRKMKYQG+KPNS+TYCSLVNAY KAG + K+DS+
Sbjct: 306 LTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSV 365

Query: 371 LRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVHALKT 430
           LRQI NSDVVLDTP FNC+IN YGQAGD+  M EL+++MEE KC PD ITFATM+     
Sbjct: 366 LRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTA 425

Query: 431 HGMTEAAQRLENKLI 446
           HG+ +A Q LE ++I
Sbjct: 426 HGIFDAVQELEKQMI 438

BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 370.5 bits (950), Expect = 2.6e-101
Identity = 193/406 (47.54%), Postives = 267/406 (65.76%), Query Frame = 0

Query: 35  KKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQ 94
           +K +S ILR++A    IE+K  SKK   L P  VLE+L E I    WE+ +++F LLR+Q
Sbjct: 87  RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146

Query: 95  HWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 154
            WY+P    Y KL++MLGKC+QP++A  LFQ M++EG   + +VYTALVSAY RSG    
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206

Query: 155 AIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTII 214
           A   ++ MKS  +C+PDVHTYSILI    +    D ++D+L+DM   GI  NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266

Query: 215 NGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGI 274
           + +GKAKMF +MES L++M+    C PD  T NS +RA+G + QIE ME  Y +FQ  GI
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI 326

Query: 275 EPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEE 334
           EP+  T+N ++ SYGK+  Y KM +V+ +M+K  +S TIVT N +ID FGRAG++K+ME 
Sbjct: 327 EPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEY 386

Query: 335 YFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYG 394
            FR M+ + + P+ VT CSLV AYG+A   +K+  +LR IENSD+ LD   FNCL++ YG
Sbjct: 387 LFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 446

Query: 395 QAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEAAQRL 441
           +     +M  +   ME+    PD IT+ TMV A +  GMT   + L
Sbjct: 447 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489

BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match: Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 2.0e-85
Identity = 158/396 (39.90%), Postives = 243/396 (61.36%), Query Frame = 0

Query: 48  IRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 107
           I+ +++K + +   N W + V E L + I +  W   L++F +LR+Q +Y+P+  TY KL
Sbjct: 71  IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130

Query: 108 LMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 167
           L++LGK  QP +A  LF  ML EGL+P++++YTAL++AY RS L+  A   +D+MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 168 CKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 227
           C+PDV TYS L+  C    + DL+  +  +M    IT NTVT N +++G+G+   F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 228 SLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISS 287
            +L +M+ S +C PD+ T N  +  +GN  +I+ ME WY +F+  GIEP+  T+N +I S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query: 288 YGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPN 347
           YGK RMYDKM SV+ +M K  F  T  T N II+ F   G+ K ME  F +M+ +GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370

Query: 348 SVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFL 407
           + T+C L+N Y  AG   KV S ++     ++  +T  +N +I+   +A D+ +M  +++
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430

Query: 408 EMEENKCVPDSITFATMVHALKTHGMTEAAQRLENK 444
            M+E +CV DS TF  MV A +  GM +    LE +
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQE 466

BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match: Q9SV96 (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 8.6e-44
Identity = 119/437 (27.23%), Postives = 217/437 (49.66%), Query Frame = 0

Query: 11  ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
           ISS R      ++++ +  L R L   +SRI  ++  ++ +++     + ++ +      
Sbjct: 51  ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110

Query: 71  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
             +E  + + W   L++F  +++Q WY P    Y+KL+ ++GK  Q + A  LF  M + 
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170

Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRFR 190
           G +P   VY AL++A+  +    KA+E V    D+MK I  C+P+V TY+IL+    +  
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230

Query: 191 RLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITF 250
           ++D +  +  D+    ++ +  T+N +++ +GK  M ++ME++L  M  S  C PD+ITF
Sbjct: 231 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITF 290

Query: 251 NSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEK 310
           N  I +YG  ++ EKME+ +        +P   T+N+MI +YGKARM DK   V   M  
Sbjct: 291 NVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMND 350

Query: 311 RFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEK 370
             + P+ +T   +I ++G  G++ R  E F ++        + T  +++  Y + G   +
Sbjct: 351 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIE 410

Query: 371 VDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVH 430
            D +        V  D   +  L   Y +A    ++  L  +ME++  VP+   F   + 
Sbjct: 411 ADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF---LE 470

Query: 431 ALKTHGMTEAAQRLENK 444
           AL+  G        EN+
Sbjct: 471 ALEVFGSRLPGSGSENR 475

BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match: A3ABE1 (Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0750400 PE=3 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-39
Identity = 101/363 (27.82%), Postives = 181/363 (49.86%), Query Frame = 0

Query: 81  WETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYT 140
           W   L++F  +++Q WY      Y+KL+ ++G+  Q + A  LF  M + G +P   VY 
Sbjct: 101 WLQCLEVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYN 160

Query: 141 ALVSAY----GRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILA 200
           +L+  +     +S  L KA+   ++MK+I  C+P++ TY+IL+    +      L  +  
Sbjct: 161 SLIGTHLHSRDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFK 220

Query: 201 DMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNS 260
           D+    ++ +  TYN +++ +GK  M  +MES+L+ M +S  C PD+ITFN  I +YG  
Sbjct: 221 DLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRM-KSNQCRPDVITFNILIDSYGRK 280

Query: 261 EQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTM 320
           +  +KME+ +        +P   T+N+MI++YGKAR+ +K   VL+ M +  F P  VT 
Sbjct: 281 QAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQ 340

Query: 321 NTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIEN 380
             +I ++     + R  + F ++       +  +  ++++AY   G   + D +L  +  
Sbjct: 341 ECLIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIK 400

Query: 381 SDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEA 440
              V     +  L   Y +A D + + +L   M     VP+   F   + AL+  G T+ 
Sbjct: 401 KGAVPSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFF---LDALEAFGNTDK 459

BLAST of CmaCh08G005130 vs. TAIR 10
Match: AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 575.5 bits (1482), Expect = 3.8e-164
Identity = 277/443 (62.53%), Postives = 342/443 (77.20%), Query Frame = 0

Query: 3   SINPTPLFISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNN 62
           SI PT         R     S   S   Q D KK LSRILR DAA++ IERKANS+KY  
Sbjct: 46  SITPTMCSTKVPNERTEKMNSGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLT 105

Query: 63  LWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASL 122
           LWP AVLEALDEAI+EN W++ LKIF LLR+QHWYEPRCKTYTKL  +LG C+QP QASL
Sbjct: 106 LWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASL 165

Query: 123 LFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCC 182
           LF++MLSEGLKP+IDVYT+L+S YG+S LL KA  T++ MKS+SDCKPDV T+++LI CC
Sbjct: 166 LFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCC 225

Query: 183 TRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPD 242
            +  R DL+K I+ +MSYLG+ C+TVTYNTII+G+GKA MFE+MES+L +MIE G  LPD
Sbjct: 226 CKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPD 285

Query: 243 LITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLN 302
           + T NS I +YGN   + KME WY+ FQLMG++PD  T+N +I S+GKA MY KM SV++
Sbjct: 286 VCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMD 345

Query: 303 FMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAG 362
           FMEKRFFS T VT N +I+ FG+AG I++M++ FRKMKYQG+KPNS+TYCSLVNAY KAG
Sbjct: 346 FMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAG 405

Query: 363 NIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFA 422
            + K+DS+LRQI NSDVVLDTP FNC+IN YGQAGD+  M EL+++MEE KC PD ITFA
Sbjct: 406 LVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFA 465

Query: 423 TMVHALKTHGMTEAAQRLENKLI 446
           TM+     HG+ +A Q LE ++I
Sbjct: 466 TMIKTYTAHGIFDAVQELEKQMI 488

BLAST of CmaCh08G005130 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 370.5 bits (950), Expect = 1.9e-102
Identity = 193/406 (47.54%), Postives = 267/406 (65.76%), Query Frame = 0

Query: 35  KKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQ 94
           +K +S ILR++A    IE+K  SKK   L P  VLE+L E I    WE+ +++F LLR+Q
Sbjct: 87  RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146

Query: 95  HWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 154
            WY+P    Y KL++MLGKC+QP++A  LFQ M++EG   + +VYTALVSAY RSG    
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206

Query: 155 AIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTII 214
           A   ++ MKS  +C+PDVHTYSILI    +    D ++D+L+DM   GI  NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266

Query: 215 NGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGI 274
           + +GKAKMF +MES L++M+    C PD  T NS +RA+G + QIE ME  Y +FQ  GI
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI 326

Query: 275 EPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEE 334
           EP+  T+N ++ SYGK+  Y KM +V+ +M+K  +S TIVT N +ID FGRAG++K+ME 
Sbjct: 327 EPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEY 386

Query: 335 YFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYG 394
            FR M+ + + P+ VT CSLV AYG+A   +K+  +LR IENSD+ LD   FNCL++ YG
Sbjct: 387 LFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 446

Query: 395 QAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEAAQRL 441
           +     +M  +   ME+    PD IT+ TMV A +  GMT   + L
Sbjct: 447 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489

BLAST of CmaCh08G005130 vs. TAIR 10
Match: AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 317.8 bits (813), Expect = 1.4e-86
Identity = 158/396 (39.90%), Postives = 243/396 (61.36%), Query Frame = 0

Query: 48  IRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 107
           I+ +++K + +   N W + V E L + I +  W   L++F +LR+Q +Y+P+  TY KL
Sbjct: 71  IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130

Query: 108 LMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 167
           L++LGK  QP +A  LF  ML EGL+P++++YTAL++AY RS L+  A   +D+MKS   
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190

Query: 168 CKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 227
           C+PDV TYS L+  C    + DL+  +  +M    IT NTVT N +++G+G+   F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250

Query: 228 SLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISS 287
            +L +M+ S +C PD+ T N  +  +GN  +I+ ME WY +F+  GIEP+  T+N +I S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310

Query: 288 YGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPN 347
           YGK RMYDKM SV+ +M K  F  T  T N II+ F   G+ K ME  F +M+ +GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370

Query: 348 SVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFL 407
           + T+C L+N Y  AG   KV S ++     ++  +T  +N +I+   +A D+ +M  +++
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430

Query: 408 EMEENKCVPDSITFATMVHALKTHGMTEAAQRLENK 444
            M+E +CV DS TF  MV A +  GM +    LE +
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQE 466

BLAST of CmaCh08G005130 vs. TAIR 10
Match: AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-45
Identity = 119/437 (27.23%), Postives = 217/437 (49.66%), Query Frame = 0

Query: 11  ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
           ISS R      ++++ +  L R L   +SRI  ++  ++ +++     + ++ +      
Sbjct: 51  ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110

Query: 71  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
             +E  + + W   L++F  +++Q WY P    Y+KL+ ++GK  Q + A  LF  M + 
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170

Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRFR 190
           G +P   VY AL++A+  +    KA+E V    D+MK I  C+P+V TY+IL+    +  
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230

Query: 191 RLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITF 250
           ++D +  +  D+    ++ +  T+N +++ +GK  M ++ME++L  M  S  C PD+ITF
Sbjct: 231 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITF 290

Query: 251 NSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEK 310
           N  I +YG  ++ EKME+ +        +P   T+N+MI +YGKARM DK   V   M  
Sbjct: 291 NVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMND 350

Query: 311 RFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEK 370
             + P+ +T   +I ++G  G++ R  E F ++        + T  +++  Y + G   +
Sbjct: 351 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIE 410

Query: 371 VDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVH 430
            D +        V  D   +  L   Y +A    ++  L  +ME++  VP+   F   + 
Sbjct: 411 ADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF---LE 470

Query: 431 ALKTHGMTEAAQRLENK 444
           AL+  G        EN+
Sbjct: 471 ALEVFGSRLPGSGSENR 475

BLAST of CmaCh08G005130 vs. TAIR 10
Match: AT4G39620.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 179.5 bits (454), Expect = 6.1e-45
Identity = 119/437 (27.23%), Postives = 217/437 (49.66%), Query Frame = 0

Query: 11  ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
           ISS R      ++++ +  L R L   +SRI  ++  ++ +++     + ++ +      
Sbjct: 51  ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110

Query: 71  ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
             +E  + + W   L++F  +++Q WY P    Y+KL+ ++GK  Q + A  LF  M + 
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170

Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRFR 190
           G +P   VY AL++A+  +    KA+E V    D+MK I  C+P+V TY+IL+    +  
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230

Query: 191 RLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITF 250
           ++D +  +  D+    ++ +  T+N +++ +GK  M ++ME++L  M  S  C PD+ITF
Sbjct: 231 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITF 290

Query: 251 NSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEK 310
           N  I +YG  ++ EKME+ +        +P   T+N+MI +YGKARM DK   V   M  
Sbjct: 291 NVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMND 350

Query: 311 RFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEK 370
             + P+ +T   +I ++G  G++ R  E F ++        + T  +++  Y + G   +
Sbjct: 351 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIE 410

Query: 371 VDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVH 430
            D +        V  D   +  L   Y +A    ++  L  +ME++  VP+   F   + 
Sbjct: 411 ADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF---LE 470

Query: 431 ALKTHGMTEAAQRLENK 444
           AL+  G        EN+
Sbjct: 471 ALEVFGSRLPGSGSENR 475

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9SCP47.0e-16363.22Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX... [more]
Q9FKC32.6e-10147.54Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... [more]
Q9SQU62.0e-8539.90Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop... [more]
Q9SV968.6e-4427.23Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop... [more]
A3ABE12.2e-3927.82Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza... [more]
Match NameE-valueIdentityDescription
AT3G53170.13.8e-16462.53Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G48730.11.9e-10247.54Pentatricopeptide repeat (PPR) superfamily protein [more]
AT3G06430.11.4e-8639.90Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39620.16.1e-4527.23Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT4G39620.26.1e-4527.23Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 187..303
e-value: 1.7E-29
score: 105.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 35..186
e-value: 1.5E-31
score: 111.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 377..445
e-value: 4.5E-13
score: 51.1
coord: 304..376
e-value: 8.3E-19
score: 69.8
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 383..428
e-value: 1.6E-9
score: 37.9
coord: 311..359
e-value: 3.3E-11
score: 43.2
coord: 241..288
e-value: 8.4E-11
score: 41.9
coord: 134..182
e-value: 1.8E-11
score: 44.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 138..172
e-value: 5.2E-6
score: 24.3
coord: 103..135
e-value: 0.0024
score: 15.9
coord: 208..242
e-value: 3.7E-9
score: 34.2
coord: 386..418
e-value: 7.2E-9
score: 33.3
coord: 244..277
e-value: 9.1E-7
score: 26.7
coord: 349..383
e-value: 7.9E-7
score: 26.9
coord: 280..312
e-value: 7.0E-9
score: 33.3
coord: 314..347
e-value: 1.6E-6
score: 25.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 208..237
e-value: 2.3E-7
score: 30.6
coord: 103..132
e-value: 0.11
score: 12.8
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 277..311
score: 10.873667
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 347..381
score: 10.117337
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 135..165
score: 8.79102
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 206..240
score: 11.049048
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 100..134
score: 9.13082
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 242..276
score: 10.314641
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 382..416
score: 10.862706
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 312..346
score: 11.005202
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 171..205
score: 8.747175
NoneNo IPR availablePANTHERPTHR47933:SF35OS03G0115300 PROTEINcoord: 15..450
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 15..450

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G005130.1CmaCh08G005130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding