Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTTCACCTTCACAACGCCCCAATCTTCGGCTGGTTATCATTTCTCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTGTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCTCAAGAAGGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGTGCTGTTCTCGAGGCTCTTGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGGTTTTACGATCTTCTTCTTTAATCTTTTTTTTTTTTTTTTTTCCCTGTTTCTTCGTTTTCAATGCTTGGAACTGGTTGCTATGTAGCTAAGAATACTCTTCCTGACTTTGTTGGATTTATAAGTGAAGAATGTTGAATCACGGCTCTTAACGAAAGCTCTAAATCGATGAGTCAGGATATATTTAATCTTTAATTGCTTTGACACTCTTACGTATTCTTCATAGTGTATAAAATCATCAATCAACTCAAAAGTAAGTTCAATGAATTACAGTAAACTTAATCTTTTATTACGCGCTGATAATTTGAATATGAATGAAGTATTAATTCTATATGAATTGCGGCTAAAATGAACTATTTCCACTCTGTCATTGAGGAGAGATCACTCATCCAACTCCAATTCCATGCCTGATTGGTTACTTTTTTGTGAAATTCTAAGTGTTCTCAATATCCTTCCAGAAGTCTTTAGCACGGGAAGTTATGTAAATCTTAGGAAATGAAAGACTAAATGGAGAATCCTCCCAAACTGTAGAGGCTATACCTTTCTTCAGAAAATCTTTAGTTTTAGCAATCTCAACCTATTGGCCGAAACTTCTTCTTGTTGAGGATTATTGAAAAAAGTAGTCCCACGTTGGCTAATTAAGAGAAAAATCATGGGTTTATAAGTAAAGAATACATCTCCATTGGTATGAAGTCTTTTGGGGAAACCAAAAGCAAAGTCATTAGAGGTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGCCCGTGATTCCTAACACTTCTACCTGAAATTTCTCTCAGGATGGAATCAGGCTATCACTATTTGAGATGATATGTCACCGTACGATGTTCTCATGAAGAAAAAACCTCTATAGCTGTTTTGGTAAGAGAGGTGCATTTCTGTTTCTGATATCTCCCACTCCCAGCCTGCCCAAAGAGCCATGTTTGCTTTGTTTCTGCTTTCAGAACCCTTGCATCCCGTCTTGTTAGTGATCGCTTAAACCCATTTGAAATATTTCTCTGAGAAGGAGCTTCTGAAGAACTTCTTATTCAAGGGGTTATTACAAGAGCTTTCAAGGTAGCAGCTAACCAAACAACCTAGAATCCATCCAAAGAAGGCTCACATAGGTTTGAGAAATTTCTTTCCTTCATTTTTTTGAATTCAAATGAGAAAACAAAAAAATTGATACAGCATTTCCATGATGAAAATGAAAAAGCTCATTACTAATGAACTGATTTTACTGTCGTATTTCGACAATAAGAGTTATGGCCAAATAATTTTGTACATCTTTTCAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTAAGCAAGCAAGCTTGCTGTTTCAGATTATGTTATCCGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATTCCGTCGTCTTGACCTTCTGAAGGACATTCTTGCTGACATGTCTTATCTGGGGATTACATGTAATACGGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCCTATGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATCGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTATGACAAGATGGTGTCGGTTTTGAACTTCATGGAAAAACGCTTTTTCTCTCCGACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTAAGAGGATGGAAGAATACTTCAGAAAAATGAAATATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGGAAGAGAATAAATGTGTGCCTGATAGCATTACATTTGCTACAATGGTTCACGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCACTAGAGACGACAAGATAAATTAG
mRNA sequence
CCTTCACCTTCACAACGCCCCAATCTTCGGCTGGTTATCATTTCTCCCAACCTCCACAGTCGCTTCAATGGCTTCCATAAACCCCACTCCTTTGTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCTCAAGAAGGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGTGCTGTTCTCGAGGCTCTTGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTAAGCAAGCAAGCTTGCTGTTTCAGATTATGTTATCCGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATTCCGTCGTCTTGACCTTCTGAAGGACATTCTTGCTGACATGTCTTATCTGGGGATTACATGTAATACGGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCCTATGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATCGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTATGACAAGATGGTGTCGGTTTTGAACTTCATGGAAAAACGCTTTTTCTCTCCGACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTAAGAGGATGGAAGAATACTTCAGAAAAATGAAATATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGGAAGAGAATAAATGTGTGCCTGATAGCATTACATTTGCTACAATGGTTCACGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCACTAGAGACGACAAGATAAATTAG
Coding sequence (CDS)
ATGGCTTCCATAAACCCCACTCCTTTGTTCATCTCCTCTTCCCGCTCACGGAAACTTAACCGGACTTCCGACCAGTCCTCCGACGGCCTACAGAGAGATCTCAAGAAGGGCCTGTCTCGGATTCTGAGGAAAGATGCTGCTATTAGAGCTATTGAGAGAAAAGCCAATTCCAAAAAGTACAATAACCTTTGGCCGAGTGCTGTTCTCGAGGCTCTTGATGAGGCTATTCAGGAGAATCTTTGGGAAACCACTCTTAAGATTTTTGGCCTACTTCGCCAGCAACATTGGTATGAACCAAGATGCAAAACATACACAAAATTGTTGATGATGCTGGGTAAGTGCAGGCAACCTAAGCAAGCAAGCTTGCTGTTTCAGATTATGTTATCCGAGGGGTTGAAACCTTCTATTGATGTTTACACTGCTCTTGTTAGTGCTTATGGTCGAAGTGGCCTCCTTCACAAGGCCATTGAAACAGTTGATGAAATGAAATCCATTTCTGACTGCAAGCCAGATGTACATACATATTCAATTCTCATTGATTGTTGCACAAGATTCCGTCGTCTTGACCTTCTGAAGGACATTCTTGCTGACATGTCTTATCTGGGGATTACATGTAATACGGTCACTTACAATACTATCATTAATGGATTTGGAAAGGCTAAAATGTTTGAGCAAATGGAAAGCTTGTTATTGGAAATGATTGAAAGTGGTAGCTGCCTTCCAGATTTGATTACATTCAATTCTTTTATCAGAGCCTATGGAAATAGTGAGCAGATTGAGAAGATGGAGAAGTGGTATAATGAATTTCAGCTGATGGGAATCGAGCCAGATGATTGGACATACAATACTATGATCAGCTCGTACGGGAAAGCTAGAATGTATGACAAGATGGTGTCGGTTTTGAACTTCATGGAAAAACGCTTTTTCTCTCCGACAATTGTTACTATGAATACAATCATTGATGTGTTTGGAAGAGCTGGAAATATTAAGAGGATGGAAGAATACTTCAGAAAAATGAAATATCAGGGAATGAAGCCTAACTCTGTAACTTACTGTTCTCTTGTTAATGCATATGGTAAAGCTGGTAATATTGAGAAAGTTGATTCAATTTTGAGGCAAATTGAAAATTCTGATGTGGTACTGGATACCCCTCTTTTTAACTGCCTTATCAATGTGTATGGCCAGGCTGGTGATGTGAGAAAGATGGGAGAGTTATTCTTGGAAATGGAAGAGAATAAATGTGTGCCTGATAGCATTACATTTGCTACAATGGTTCACGCCTTAAAGACTCATGGCATGACTGAGGCTGCTCAAAGATTGGAAAATAAGTTGATTGTCACTAGAGACGACAAGATAAATTAG
Protein sequence
MASINPTPLFISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEAAQRLENKLIVTRDDKIN
Homology
BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match:
Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)
HSP 1 Score: 575.1 bits (1481), Expect = 7.0e-163
Identity = 275/435 (63.22%), Postives = 344/435 (79.08%), Query Frame = 0
Query: 11 ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
+ + R+ K+N S S Q D KK LSRILR DAA++ IERKANS+KY LWP AVLE
Sbjct: 6 VPNERTEKMN--SGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLE 65
Query: 71 ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
ALDEAI+EN W++ LKIF LLR+QHWYEPRCKTYTKL +LG C+QP QASLLF++MLSE
Sbjct: 66 ALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSE 125
Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDL 190
GLKP+IDVYT+L+S YG+S LL KA T++ MKS+SDCKPDV T+++LI CC + R DL
Sbjct: 126 GLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCCCKLGRFDL 185
Query: 191 LKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFI 250
+K I+ +MSYLG+ C+TVTYNTII+G+GKA MFE+MES+L +MIE G LPD+ T NS I
Sbjct: 186 VKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSII 245
Query: 251 RAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFS 310
+YGN + KME WY+ FQLMG++PD T+N +I S+GKA MY KM SV++FMEKRFFS
Sbjct: 246 GSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMDFMEKRFFS 305
Query: 311 PTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSI 370
T VT N +I+ FG+AG I++M++ FRKMKYQG+KPNS+TYCSLVNAY KAG + K+DS+
Sbjct: 306 LTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAGLVVKIDSV 365
Query: 371 LRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVHALKT 430
LRQI NSDVVLDTP FNC+IN YGQAGD+ M EL+++MEE KC PD ITFATM+
Sbjct: 366 LRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYTA 425
Query: 431 HGMTEAAQRLENKLI 446
HG+ +A Q LE ++I
Sbjct: 426 HGIFDAVQELEKQMI 438
BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match:
Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)
HSP 1 Score: 370.5 bits (950), Expect = 2.6e-101
Identity = 193/406 (47.54%), Postives = 267/406 (65.76%), Query Frame = 0
Query: 35 KKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQ 94
+K +S ILR++A IE+K SKK L P VLE+L E I WE+ +++F LLR+Q
Sbjct: 87 RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146
Query: 95 HWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 154
WY+P Y KL++MLGKC+QP++A LFQ M++EG + +VYTALVSAY RSG
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206
Query: 155 AIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTII 214
A ++ MKS +C+PDVHTYSILI + D ++D+L+DM GI NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266
Query: 215 NGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGI 274
+ +GKAKMF +MES L++M+ C PD T NS +RA+G + QIE ME Y +FQ GI
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI 326
Query: 275 EPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEE 334
EP+ T+N ++ SYGK+ Y KM +V+ +M+K +S TIVT N +ID FGRAG++K+ME
Sbjct: 327 EPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEY 386
Query: 335 YFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYG 394
FR M+ + + P+ VT CSLV AYG+A +K+ +LR IENSD+ LD FNCL++ YG
Sbjct: 387 LFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 446
Query: 395 QAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEAAQRL 441
+ +M + ME+ PD IT+ TMV A + GMT + L
Sbjct: 447 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489
BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match:
Q9SQU6 (Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2750 PE=1 SV=1)
HSP 1 Score: 317.8 bits (813), Expect = 2.0e-85
Identity = 158/396 (39.90%), Postives = 243/396 (61.36%), Query Frame = 0
Query: 48 IRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 107
I+ +++K + + N W + V E L + I + W L++F +LR+Q +Y+P+ TY KL
Sbjct: 71 IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130
Query: 108 LMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 167
L++LGK QP +A LF ML EGL+P++++YTAL++AY RS L+ A +D+MKS
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190
Query: 168 CKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 227
C+PDV TYS L+ C + DL+ + +M IT NTVT N +++G+G+ F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250
Query: 228 SLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISS 287
+L +M+ S +C PD+ T N + +GN +I+ ME WY +F+ GIEP+ T+N +I S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310
Query: 288 YGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPN 347
YGK RMYDKM SV+ +M K F T T N II+ F G+ K ME F +M+ +GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370
Query: 348 SVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFL 407
+ T+C L+N Y AG KV S ++ ++ +T +N +I+ +A D+ +M +++
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430
Query: 408 EMEENKCVPDSITFATMVHALKTHGMTEAAQRLENK 444
M+E +CV DS TF MV A + GM + LE +
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQE 466
BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match:
Q9SV96 (Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2453 PE=2 SV=1)
HSP 1 Score: 179.5 bits (454), Expect = 8.6e-44
Identity = 119/437 (27.23%), Postives = 217/437 (49.66%), Query Frame = 0
Query: 11 ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
ISS R ++++ + L R L +SRI ++ ++ +++ + ++ +
Sbjct: 51 ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110
Query: 71 ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
+E + + W L++F +++Q WY P Y+KL+ ++GK Q + A LF M +
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170
Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRFR 190
G +P VY AL++A+ + KA+E V D+MK I C+P+V TY+IL+ +
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230
Query: 191 RLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITF 250
++D + + D+ ++ + T+N +++ +GK M ++ME++L M S C PD+ITF
Sbjct: 231 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITF 290
Query: 251 NSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEK 310
N I +YG ++ EKME+ + +P T+N+MI +YGKARM DK V M
Sbjct: 291 NVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMND 350
Query: 311 RFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEK 370
+ P+ +T +I ++G G++ R E F ++ + T +++ Y + G +
Sbjct: 351 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIE 410
Query: 371 VDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVH 430
D + V D + L Y +A ++ L +ME++ VP+ F +
Sbjct: 411 ADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF---LE 470
Query: 431 ALKTHGMTEAAQRLENK 444
AL+ G EN+
Sbjct: 471 ALEVFGSRLPGSGSENR 475
BLAST of CmaCh08G005130 vs. ExPASy Swiss-Prot
Match:
A3ABE1 (Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0750400 PE=3 SV=2)
HSP 1 Score: 164.9 bits (416), Expect = 2.2e-39
Identity = 101/363 (27.82%), Postives = 181/363 (49.86%), Query Frame = 0
Query: 81 WETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYT 140
W L++F +++Q WY Y+KL+ ++G+ Q + A LF M + G +P VY
Sbjct: 101 WLQCLEVFRWMQKQRWYVADNGIYSKLISVMGRKGQIRMAMWLFSQMRNSGCRPDTSVYN 160
Query: 141 ALVSAY----GRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILA 200
+L+ + +S L KA+ ++MK+I C+P++ TY+IL+ + L +
Sbjct: 161 SLIGTHLHSRDKSKALAKALGYFEKMKTIDRCQPNIVTYNILLRAFAQAGDTKQLDILFK 220
Query: 201 DMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNS 260
D+ ++ + TYN +++ +GK M +MES+L+ M +S C PD+ITFN I +YG
Sbjct: 221 DLDESPVSPDIYTYNGVMDAYGKNGMITEMESVLVRM-KSNQCRPDVITFNILIDSYGRK 280
Query: 261 EQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTM 320
+ +KME+ + +P T+N+MI++YGKAR+ +K VL+ M + F P VT
Sbjct: 281 QAFDKMEQVFKSLLRSKEKPTHPTFNSMITNYGKARLREKAECVLDKMTEMGFKPNYVTQ 340
Query: 321 NTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIEN 380
+I ++ + R + F ++ + + ++++AY G + D +L +
Sbjct: 341 ECLIMMYAYCDCVSRARQIFDELVSSQNNVHLSSVNAMLDAYCMNGLPMEADQLLDSVIK 400
Query: 381 SDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEA 440
V + L Y +A D + + +L M VP+ F + AL+ G T+
Sbjct: 401 KGAVPSASTYKLLYKAYTKANDKKLIQKLLKRMNSQGIVPNKKFF---LDALEAFGNTDK 459
BLAST of CmaCh08G005130 vs. TAIR 10
Match:
AT3G53170.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 575.5 bits (1482), Expect = 3.8e-164
Identity = 277/443 (62.53%), Postives = 342/443 (77.20%), Query Frame = 0
Query: 3 SINPTPLFISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNN 62
SI PT R S S Q D KK LSRILR DAA++ IERKANS+KY
Sbjct: 46 SITPTMCSTKVPNERTEKMNSGLISTRHQVDPKKELSRILRTDAAVKGIERKANSEKYLT 105
Query: 63 LWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASL 122
LWP AVLEALDEAI+EN W++ LKIF LLR+QHWYEPRCKTYTKL +LG C+QP QASL
Sbjct: 106 LWPKAVLEALDEAIKENRWQSALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQASL 165
Query: 123 LFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISDCKPDVHTYSILIDCC 182
LF++MLSEGLKP+IDVYT+L+S YG+S LL KA T++ MKS+SDCKPDV T+++LI CC
Sbjct: 166 LFEVMLSEGLKPTIDVYTSLISVYGKSELLDKAFSTLEYMKSVSDCKPDVFTFTVLISCC 225
Query: 183 TRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPD 242
+ R DL+K I+ +MSYLG+ C+TVTYNTII+G+GKA MFE+MES+L +MIE G LPD
Sbjct: 226 CKLGRFDLVKSIVLEMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPD 285
Query: 243 LITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLN 302
+ T NS I +YGN + KME WY+ FQLMG++PD T+N +I S+GKA MY KM SV++
Sbjct: 286 VCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKKMCSVMD 345
Query: 303 FMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAG 362
FMEKRFFS T VT N +I+ FG+AG I++M++ FRKMKYQG+KPNS+TYCSLVNAY KAG
Sbjct: 346 FMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVNAYSKAG 405
Query: 363 NIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFA 422
+ K+DS+LRQI NSDVVLDTP FNC+IN YGQAGD+ M EL+++MEE KC PD ITFA
Sbjct: 406 LVVKIDSVLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFA 465
Query: 423 TMVHALKTHGMTEAAQRLENKLI 446
TM+ HG+ +A Q LE ++I
Sbjct: 466 TMIKTYTAHGIFDAVQELEKQMI 488
BLAST of CmaCh08G005130 vs. TAIR 10
Match:
AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )
HSP 1 Score: 370.5 bits (950), Expect = 1.9e-102
Identity = 193/406 (47.54%), Postives = 267/406 (65.76%), Query Frame = 0
Query: 35 KKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQ 94
+K +S ILR++A IE+K SKK L P VLE+L E I WE+ +++F LLR+Q
Sbjct: 87 RKAISIILRREATKSIIEKKKGSKK---LLPRTVLESLHERITALRWESAIQVFELLREQ 146
Query: 95 HWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHK 154
WY+P Y KL++MLGKC+QP++A LFQ M++EG + +VYTALVSAY RSG
Sbjct: 147 LWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSAYSRSGRFDA 206
Query: 155 AIETVDEMKSISDCKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTII 214
A ++ MKS +C+PDVHTYSILI + D ++D+L+DM GI NT+TYNT+I
Sbjct: 207 AFTLLERMKSSHNCQPDVHTYSILIKSFLQVFAFDKVQDLLSDMRRQGIRPNTITYNTLI 266
Query: 215 NGFGKAKMFEQMESLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGI 274
+ +GKAKMF +MES L++M+ C PD T NS +RA+G + QIE ME Y +FQ GI
Sbjct: 267 DAYGKAKMFVEMESTLIQMLGEDDCKPDSWTMNSTLRAFGGNGQIEMMENCYEKFQSSGI 326
Query: 275 EPDDWTYNTMISSYGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEE 334
EP+ T+N ++ SYGK+ Y KM +V+ +M+K +S TIVT N +ID FGRAG++K+ME
Sbjct: 327 EPNIRTFNILLDSYGKSGNYKKMSAVMEYMQKYHYSWTIVTYNVVIDAFGRAGDLKQMEY 386
Query: 335 YFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYG 394
FR M+ + + P+ VT CSLV AYG+A +K+ +LR IENSD+ LD FNCL++ YG
Sbjct: 387 LFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSDIRLDLVFFNCLVDAYG 446
Query: 395 QAGDVRKMGELFLEMEENKCVPDSITFATMVHALKTHGMTEAAQRL 441
+ +M + ME+ PD IT+ TMV A + GMT + L
Sbjct: 447 RMEKFAEMKGVLELMEKKGFKPDKITYRTMVKAYRISGMTTHVKEL 489
BLAST of CmaCh08G005130 vs. TAIR 10
Match:
AT3G06430.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 317.8 bits (813), Expect = 1.4e-86
Identity = 158/396 (39.90%), Postives = 243/396 (61.36%), Query Frame = 0
Query: 48 IRAIERKANSKKYNNLWPSAVLEALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKL 107
I+ +++K + + N W + V E L + I + W L++F +LR+Q +Y+P+ TY KL
Sbjct: 71 IKNVKKKLDRRSKANGWVNTVTETLSDLIAKKQWLQALEVFDMLREQTFYQPKEGTYMKL 130
Query: 108 LMMLGKCRQPKQASLLFQIMLSEGLKPSIDVYTALVSAYGRSGLLHKAIETVDEMKSISD 167
L++LGK QP +A LF ML EGL+P++++YTAL++AY RS L+ A +D+MKS
Sbjct: 131 LVLLGKSGQPNRAQKLFDEMLEEGLEPTVELYTALLAAYTRSNLIDDAFSILDKMKSFPQ 190
Query: 168 CKPDVHTYSILIDCCTRFRRLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQME 227
C+PDV TYS L+ C + DL+ + +M IT NTVT N +++G+G+ F+QME
Sbjct: 191 CQPDVFTYSTLLKACVDASQFDLVDSLYKEMDERLITPNTVTQNIVLSGYGRVGRFDQME 250
Query: 228 SLLLEMIESGSCLPDLITFNSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISS 287
+L +M+ S +C PD+ T N + +GN +I+ ME WY +F+ GIEP+ T+N +I S
Sbjct: 251 KVLSDMLVSTACKPDVWTMNIILSVFGNMGKIDMMESWYEKFRNFGIEPETRTFNILIGS 310
Query: 288 YGKARMYDKMVSVLNFMEKRFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPN 347
YGK RMYDKM SV+ +M K F T T N II+ F G+ K ME F +M+ +GMK +
Sbjct: 311 YGKKRMYDKMSSVMEYMRKLEFPWTTSTYNNIIEAFADVGDAKNMELTFDQMRSEGMKAD 370
Query: 348 SVTYCSLVNAYGKAGNIEKVDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFL 407
+ T+C L+N Y AG KV S ++ ++ +T +N +I+ +A D+ +M +++
Sbjct: 371 TKTFCCLINGYANAGLFHKVISSVQLAAKFEIPENTAFYNAVISACAKADDLIEMERVYI 430
Query: 408 EMEENKCVPDSITFATMVHALKTHGMTEAAQRLENK 444
M+E +CV DS TF MV A + GM + LE +
Sbjct: 431 RMKERQCVCDSRTFEIMVEAYEKEGMNDKIYYLEQE 466
BLAST of CmaCh08G005130 vs. TAIR 10
Match:
AT4G39620.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 179.5 bits (454), Expect = 6.1e-45
Identity = 119/437 (27.23%), Postives = 217/437 (49.66%), Query Frame = 0
Query: 11 ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
ISS R ++++ + L R L +SRI ++ ++ +++ + ++ +
Sbjct: 51 ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110
Query: 71 ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
+E + + W L++F +++Q WY P Y+KL+ ++GK Q + A LF M +
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170
Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRFR 190
G +P VY AL++A+ + KA+E V D+MK I C+P+V TY+IL+ +
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230
Query: 191 RLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITF 250
++D + + D+ ++ + T+N +++ +GK M ++ME++L M S C PD+ITF
Sbjct: 231 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITF 290
Query: 251 NSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEK 310
N I +YG ++ EKME+ + +P T+N+MI +YGKARM DK V M
Sbjct: 291 NVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMND 350
Query: 311 RFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEK 370
+ P+ +T +I ++G G++ R E F ++ + T +++ Y + G +
Sbjct: 351 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIE 410
Query: 371 VDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVH 430
D + V D + L Y +A ++ L +ME++ VP+ F +
Sbjct: 411 ADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF---LE 470
Query: 431 ALKTHGMTEAAQRLENK 444
AL+ G EN+
Sbjct: 471 ALEVFGSRLPGSGSENR 475
BLAST of CmaCh08G005130 vs. TAIR 10
Match:
AT4G39620.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )
HSP 1 Score: 179.5 bits (454), Expect = 6.1e-45
Identity = 119/437 (27.23%), Postives = 217/437 (49.66%), Query Frame = 0
Query: 11 ISSSRSRKLNRTSDQSSDGLQRDLKKGLSRILRKDAAIRAIERKANSKKYNNLWPSAVLE 70
ISS R ++++ + L R L +SRI ++ ++ +++ + ++ +
Sbjct: 51 ISSRRKLAERESAERENRVLVRSL---MSRISDREPLVKTLDKYVKVVRCDHCF-----L 110
Query: 71 ALDEAIQENLWETTLKIFGLLRQQHWYEPRCKTYTKLLMMLGKCRQPKQASLLFQIMLSE 130
+E + + W L++F +++Q WY P Y+KL+ ++GK Q + A LF M +
Sbjct: 111 LFEELGKSDKWLQCLEVFRWMQKQRWYIPDNGVYSKLISVMGKKGQTRMAMWLFSEMKNS 170
Query: 131 GLKPSIDVYTALVSAYGRSGLLHKAIETV----DEMKSISDCKPDVHTYSILIDCCTRFR 190
G +P VY AL++A+ + KA+E V D+MK I C+P+V TY+IL+ +
Sbjct: 171 GCRPDASVYNALITAHLHTRDKAKALEKVRGYLDKMKGIERCQPNVVTYNILLRAFAQSG 230
Query: 191 RLDLLKDILADMSYLGITCNTVTYNTIINGFGKAKMFEQMESLLLEMIESGSCLPDLITF 250
++D + + D+ ++ + T+N +++ +GK M ++ME++L M S C PD+ITF
Sbjct: 231 KVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKNGMIKEMEAVLTRM-RSNECKPDIITF 290
Query: 251 NSFIRAYGNSEQIEKMEKWYNEFQLMGIEPDDWTYNTMISSYGKARMYDKMVSVLNFMEK 310
N I +YG ++ EKME+ + +P T+N+MI +YGKARM DK V M
Sbjct: 291 NVLIDSYGKKQEFEKMEQTFKSLMRSKEKPTLPTFNSMIINYGKARMIDKAEWVFKKMND 350
Query: 311 RFFSPTIVTMNTIIDVFGRAGNIKRMEEYFRKMKYQGMKPNSVTYCSLVNAYGKAGNIEK 370
+ P+ +T +I ++G G++ R E F ++ + T +++ Y + G +
Sbjct: 351 MNYIPSFITYECMIMMYGYCGSVSRAREIFEEVGESDRVLKASTLNAMLEVYCRNGLYIE 410
Query: 371 VDSILRQIENSDVVLDTPLFNCLINVYGQAGDVRKMGELFLEMEENKCVPDSITFATMVH 430
D + V D + L Y +A ++ L +ME++ VP+ F +
Sbjct: 411 ADKLFHNASAFRVHPDASTYKFLYKAYTKADMKEQVQILMKKMEKDGIVPNKRFF---LE 470
Query: 431 ALKTHGMTEAAQRLENK 444
AL+ G EN+
Sbjct: 471 ALEVFGSRLPGSGSENR 475
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9SCP4 | 7.0e-163 | 63.22 | Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX... | [more] |
Q9FKC3 | 2.6e-101 | 47.54 | Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop... | [more] |
Q9SQU6 | 2.0e-85 | 39.90 | Pentatricopeptide repeat-containing protein At3g06430, chloroplastic OS=Arabidop... | [more] |
Q9SV96 | 8.6e-44 | 27.23 | Pentatricopeptide repeat-containing protein At4g39620, chloroplastic OS=Arabidop... | [more] |
A3ABE1 | 2.2e-39 | 27.82 | Pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic OS=Oryza... | [more] |
Match Name | E-value | Identity | Description | |
AT3G53170.1 | 3.8e-164 | 62.53 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |
AT5G48730.1 | 1.9e-102 | 47.54 | Pentatricopeptide repeat (PPR) superfamily protein | [more] |
AT3G06430.1 | 1.4e-86 | 39.90 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |
AT4G39620.1 | 6.1e-45 | 27.23 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |
AT4G39620.2 | 6.1e-45 | 27.23 | Tetratricopeptide repeat (TPR)-like superfamily protein | [more] |