CmaCh08G005050 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G005050
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionprotein BPS1, chloroplastic-like
LocationCma_Chr08: 2896123 .. 2897037 (-)
RNA-Seq ExpressionCmaCh08G005050
SyntenyCmaCh08G005050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCTTTTGCTTCAAACCTTCAACAAGCACTGTTCCAAGTTCTACAATCATCACCATAGCCGCCATGGAAACAGAGCTTCGTTCTCTGTTTCGCTTCTTCAGGCCTTCGACGCTGAGGTCTCGTCTTGTCTGAATCAACTCCTGTTGTTGAGCTCCGATTCGACAACGTTGTCTTTTCATTGGCTTCTTCAGCTTCTTCAAGCTCTGCCTGTTCTCCATCGGGCTTTTTCCAAATTGGTTGTCGATTTAGACTGCCCTGTTGCGAAATGGGGCGCCGATTTGGTTGATGGGTATTTGAATTATAGTTTAAATTTGCTTGATCTTCTCAATTCCGTCAGTTTTTCTTTATCCCAACTGGGGAATTCGCGGCTTTCCCTTGCTTATGCTCTGAGTTTGGTTCGGAGCTCGCCGTTAATGGCGGTGGCCCGTCTGAAACCGATTGTTATGAAGAGGAATTTTGTGGGATTGGAAAACAGAGGAATTGTGGTTGATCGGAAGAAGAGTTGCTCCGGCGAGGAGTGGGCGATAGAGAGCGCGTTGGTGACAATGATGGGAATTGGGTATTGGGTCTGTGGGATTGTGATTTCTGGATGTGAGGGAGACTCGACGGCGTATTTGGAGATGAGAAGATTAGCCGCCGGCGTGACGGTTCCAGCGTTTAAAGAGTTGGATTCGGTAGTTTCCAAGAAGGGGAATGTGCCGGAGGAGGTGAAGGAGGTGAACTGTGCGGCGAAGGAGGTCGTCGGCAGCGGTGGCGGCGGCGATGGAGAGGCGGCGGAGGAGATGAGGAGGAGATTAGAGAGATTGGAGAAGGCGGTGGAGAGATTGGTGCAGGAGGTGGATGGAAGATTCTCGGAGATTCTCGACGGAAGAAGCCGATTGCTTGATGCTTTCAGACAACCCAAACATTAA

mRNA sequence

ATGCTCCTTTTGCTTCAAACCTTCAACAAGCACTGTTCCAAGTTCTACAATCATCACCATAGCCGCCATGGAAACAGAGCTTCGTTCTCTGTTTCGCTTCTTCAGGCCTTCGACGCTGAGGTCTCGTCTTGTCTGAATCAACTCCTGTTGTTGAGCTCCGATTCGACAACGTTGTCTTTTCATTGGCTTCTTCAGCTTCTTCAAGCTCTGCCTGTTCTCCATCGGGCTTTTTCCAAATTGGTTGTCGATTTAGACTGCCCTGTTGCGAAATGGGGCGCCGATTTGGTTGATGGGTATTTGAATTATAGTTTAAATTTGCTTGATCTTCTCAATTCCGTCAGTTTTTCTTTATCCCAACTGGGGAATTCGCGGCTTTCCCTTGCTTATGCTCTGAGTTTGGTTCGGAGCTCGCCGTTAATGGCGGTGGCCCGTCTGAAACCGATTGTTATGAAGAGGAATTTTGTGGGATTGGAAAACAGAGGAATTGTGGTTGATCGGAAGAAGAGTTGCTCCGGCGAGGAGTGGGCGATAGAGAGCGCGTTGGTGACAATGATGGGAATTGGGTATTGGGTCTGTGGGATTGTGATTTCTGGATGTGAGGGAGACTCGACGGCGTATTTGGAGATGAGAAGATTAGCCGCCGGCGTGACGGTTCCAGCGTTTAAAGAGTTGGATTCGGTAGTTTCCAAGAAGGGGAATGTGCCGGAGGAGGTGAAGGAGGTGAACTGTGCGGCGAAGGAGGTCGTCGGCAGCGGTGGCGGCGGCGATGGAGAGGCGGCGGAGGAGATGAGGAGGAGATTAGAGAGATTGGAGAAGGCGGTGGAGAGATTGGTGCAGGAGGTGGATGGAAGATTCTCGGAGATTCTCGACGGAAGAAGCCGATTGCTTGATGCTTTCAGACAACCCAAACATTAA

Coding sequence (CDS)

ATGCTCCTTTTGCTTCAAACCTTCAACAAGCACTGTTCCAAGTTCTACAATCATCACCATAGCCGCCATGGAAACAGAGCTTCGTTCTCTGTTTCGCTTCTTCAGGCCTTCGACGCTGAGGTCTCGTCTTGTCTGAATCAACTCCTGTTGTTGAGCTCCGATTCGACAACGTTGTCTTTTCATTGGCTTCTTCAGCTTCTTCAAGCTCTGCCTGTTCTCCATCGGGCTTTTTCCAAATTGGTTGTCGATTTAGACTGCCCTGTTGCGAAATGGGGCGCCGATTTGGTTGATGGGTATTTGAATTATAGTTTAAATTTGCTTGATCTTCTCAATTCCGTCAGTTTTTCTTTATCCCAACTGGGGAATTCGCGGCTTTCCCTTGCTTATGCTCTGAGTTTGGTTCGGAGCTCGCCGTTAATGGCGGTGGCCCGTCTGAAACCGATTGTTATGAAGAGGAATTTTGTGGGATTGGAAAACAGAGGAATTGTGGTTGATCGGAAGAAGAGTTGCTCCGGCGAGGAGTGGGCGATAGAGAGCGCGTTGGTGACAATGATGGGAATTGGGTATTGGGTCTGTGGGATTGTGATTTCTGGATGTGAGGGAGACTCGACGGCGTATTTGGAGATGAGAAGATTAGCCGCCGGCGTGACGGTTCCAGCGTTTAAAGAGTTGGATTCGGTAGTTTCCAAGAAGGGGAATGTGCCGGAGGAGGTGAAGGAGGTGAACTGTGCGGCGAAGGAGGTCGTCGGCAGCGGTGGCGGCGGCGATGGAGAGGCGGCGGAGGAGATGAGGAGGAGATTAGAGAGATTGGAGAAGGCGGTGGAGAGATTGGTGCAGGAGGTGGATGGAAGATTCTCGGAGATTCTCGACGGAAGAAGCCGATTGCTTGATGCTTTCAGACAACCCAAACATTAA

Protein sequence

MLLLLQTFNKHCSKFYNHHHSRHGNRASFSVSLLQAFDAEVSSCLNQLLLLSSDSTTLSFHWLLQLLQALPVLHRAFSKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYALSLVRSSPLMAVARLKPIVMKRNFVGLENRGIVVDRKKSCSGEEWAIESALVTMMGIGYWVCGIVISGCEGDSTAYLEMRRLAAGVTVPAFKELDSVVSKKGNVPEEVKEVNCAAKEVVGSGGGGDGEAAEEMRRRLERLEKAVERLVQEVDGRFSEILDGRSRLLDAFRQPKH
Homology
BLAST of CmaCh08G005050 vs. ExPASy Swiss-Prot
Match: Q9LMM6 (Protein BPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BPS1 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-07
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = 0

Query: 21  SRHGNRASFSVSLLQAFDAEVSSCLNQLLLLSSDSTTLSFHWLLQLLQALPVLHRAFSKL 80
           S++   +S  + LL  F+  ++S +++ L+    S  L+  W+ Q +++L   H     L
Sbjct: 23  SKNSVLSSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYAL-SLVRSSP 139
           + DL+ PV+ W    VD YL+ S+ LLDL N+ S  L++L    L L +AL +L  +SP
Sbjct: 83  ITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSP 140

BLAST of CmaCh08G005050 vs. ExPASy Swiss-Prot
Match: A2Z9A6 (UPF0496 protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_033149 PE=3 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 7.4e-07
Identity = 74/266 (27.82%), Postives = 120/266 (45.11%), Query Frame = 0

Query: 52  SSDSTTLSFHWLLQLLQALPVLHRAFSKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLN 111
           +SD  TLS  W+   +  L  LH   + L+ DL+ PV+ W    VD YLN S+ LLD+  
Sbjct: 55  ASDVLTLS--WMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICI 114

Query: 112 SVSFSLSQLGNSRLSLAYALSLVRSSPLM----AVARLKPIVMKRNFVGLENRGIVVDRK 171
           ++S  LS+L   +L L YAL ++ S   +     + R +P + +     +E  G+   R 
Sbjct: 115 ALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLRE----WMELVGVRCPRL 174

Query: 172 KSCSG--EEWA----------------IESALVTMMGIGYWVCGIVISGCEGDSTAYLEM 231
            SCS   +E A                +  AL  +  +  +VC I ++   G     +E+
Sbjct: 175 VSCSATLQELAGNLSLMKVKNSVKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVEL 234

Query: 232 RRLAAGVTVPAFKELDSVVSKK-------GNVP--EEVKEVNCAAK--EVVGSGGGGDGE 283
                     AF +L + VS++       G+V   +E++EV   AK   V+ S    + E
Sbjct: 235 HVPEKFGWSQAFNDLHTAVSEELTRQLAGGSVAAVKELEEVEACAKRLHVLASTSQLEEE 294

BLAST of CmaCh08G005050 vs. ExPASy Swiss-Prot
Match: Q337C0 (UPF0496 protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0513300 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 9.6e-07
Identity = 56/202 (27.72%), Postives = 91/202 (45.05%), Query Frame = 0

Query: 52  SSDSTTLSFHWLLQLLQALPVLHRAFSKLVVDLDCPVAKWGADLVDGYLNYSLNLLDLLN 111
           +SD  TLS  W+   +  L  LH   + L+ DL+ PV+ W    VD YLN S+ LLD+  
Sbjct: 55  ASDVLTLS--WMRLAVDCLSELHTNIANLITDLELPVSDWDDKWVDIYLNSSVKLLDICI 114

Query: 112 SVSFSLSQLGNSRLSLAYALSLVRSSPLM----AVARLKPIVMKRNFVGLENRGIVVDRK 171
           ++S  LS+L   +L L YAL ++ S   +     + R +P + +     +E  G+   R 
Sbjct: 115 ALSSELSRLDQGQLLLQYALHVLGSESGVPSQEQLKRAEPSLRE----WMELVGVRCARL 174

Query: 172 KSCSG--EEWA----------------IESALVTMMGIGYWVCGIVISGCEGDSTAYLEM 231
            SCS   +E A                +  AL  +  +  +VC I ++   G     +E+
Sbjct: 175 VSCSATLQELAGNLSLMKVKNSAKGKVLMRALYGIESVTVFVCSIFVAVLSGSPKPLVEL 234

BLAST of CmaCh08G005050 vs. TAIR 10
Match: AT1G01550.1 (Protein of unknown function (DUF793) )

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-08
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = 0

Query: 21  SRHGNRASFSVSLLQAFDAEVSSCLNQLLLLSSDSTTLSFHWLLQLLQALPVLHRAFSKL 80
           S++   +S  + LL  F+  ++S +++ L+    S  L+  W+ Q +++L   H     L
Sbjct: 23  SKNSVLSSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYAL-SLVRSSP 139
           + DL+ PV+ W    VD YL+ S+ LLDL N+ S  L++L    L L +AL +L  +SP
Sbjct: 83  ITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSP 140

BLAST of CmaCh08G005050 vs. TAIR 10
Match: AT1G01550.2 (Protein of unknown function (DUF793) )

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-08
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = 0

Query: 21  SRHGNRASFSVSLLQAFDAEVSSCLNQLLLLSSDSTTLSFHWLLQLLQALPVLHRAFSKL 80
           S++   +S  + LL  F+  ++S +++ L+    S  L+  W+ Q +++L   H     L
Sbjct: 23  SKNSVLSSKLLPLLNNFETNLASSISK-LVPKEKSDILTVSWMKQAMESLCETHNGIKTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYAL-SLVRSSP 139
           + DL+ PV+ W    VD YL+ S+ LLDL N+ S  L++L    L L +AL +L  +SP
Sbjct: 83  ITDLELPVSDWEDKWVDVYLDISVKLLDLCNAFSSELTRLNQGHLLLQFALHNLEANSP 140

BLAST of CmaCh08G005050 vs. TAIR 10
Match: AT2G46080.1 (CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G01550.2); Has 153 Blast hits to 139 proteins in 20 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 8.9e-08
Identity = 68/307 (22.15%), Postives = 131/307 (42.67%), Query Frame = 0

Query: 21  SRHGNRASFSVSLLQAFDAEVSSCLNQLLLLSSDSTTLSFHWLLQLLQALPVLHRAFSKL 80
           S+  + + + +SLL  F+  +   L +L+  + D   L+  W+   +++L   H+  + L
Sbjct: 23  SKGSDLSPWLLSLLNGFELRLEERLKKLMPKNKDD-ILTLSWMKLAMESLCETHKNINTL 82

Query: 81  VVDLDCPVAKWGADLVDGYLNYSLNLLDLLNSVSFSLSQLGNSRLSLAYALSLVRSSPLM 140
           + DL  PV+ W    VD YLN S+ LLDL N+ S  L++L    L L   L  ++S    
Sbjct: 83  ITDLQLPVSDWEEKWVDVYLNISVRLLDLCNAFSSELTRLNQGDLFLKCVLHNLQSDSGE 142

Query: 141 AVARLKPIV------MKRNFVGLENRGIVVDR--------KKSCSGEEWAIESALVTMMG 200
              + +  +      +  N   +EN   V+D         K   S +   +  A   +  
Sbjct: 143 KYLQARSSLDSWRQHVNTNNPRIENCRAVLDSLVKSLSLPKVKNSPKGKVLMRAFYGVKV 202

Query: 201 IGYWVCGIVISGCEGDSTAYLEMRRLAAGVTVPAFKELDSVV---------SKKGNVPEE 260
              ++C +  +     +    ++      +    F ++ SVV         S +  + +E
Sbjct: 203 QTVYICSVFTAAWSDSTKDLFDLPVSEKPLWAKVFTDMQSVVNAEIRDMLSSGRTTILKE 262

Query: 261 VKEVNCAAKEVVGS-GGGGDGEAAE-------EMRRRLERLEKAVERLVQEVDGRFSEIL 297
           ++ V+ + +++      G D    E       E+  + E+L + +++L++EVD  F   L
Sbjct: 263 LESVDASVEKLYPMIQDGVDPVEVEFFKDNVMELGTQAEKLSQGLDQLLEEVDSFFKLTL 322

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9LMM61.9e-0732.77Protein BPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BPS1 PE=2 SV=1[more]
A2Z9A67.4e-0727.82UPF0496 protein 4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_033149 PE=3 SV=2[more]
Q337C09.6e-0727.72UPF0496 protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0513300 PE=2 ... [more]
Match NameE-valueIdentityDescription
AT1G01550.11.4e-0832.77Protein of unknown function (DUF793) [more]
AT1G01550.21.4e-0832.77Protein of unknown function (DUF793) [more]
AT2G46080.18.9e-0822.15CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Ar... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 260..280
NoneNo IPR availablePANTHERPTHR31509BPS1-LIKE PROTEINcoord: 1..303
NoneNo IPR availablePANTHERPTHR31509:SF13PROTEIN BPS1, CHLOROPLASTIC-LIKEcoord: 1..303

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G005050.1CmaCh08G005050.1mRNA