CmaCh08G004250 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G004250
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L22-2-like
Location	Cma_Chr08: 2411640 .. 2412992 (+)
RNA-Seq Expression	CmaCh08G004250
Synteny	CmaCh08G004250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCAAAACCCTAAAATCAGCGCCGATTGTTGCGTAACATTTCTACAGGAAATTTGGGCAACGAGTTGCAGAGAAGAAGCAAAAATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGTTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCTTCTTTAGAGAAGTTCCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGCGACAAGAACAAGATCACCGTTAACTCCGATAGCAACTTCTCCAAGAGGTATTCACTGATTTGTAGTTATTTGTCATAGTTCGTTCTGGATTTGGTTTTGGATTTGTGATAATGAATACGGTTCTGGAGGAGTCATGTTCATGTACTTGTTCGTTTGTTCGGGAGTAAGCATTGTAGTTATCTGCTAGCTGACGCGTTATTACCGAGAATGGATGCGACGTGCGGGTTGTTCTTTGTTTTCTGTGATTTTGTGTTCTTGTTGCCTATTTTATTGGGTTGTGGGGTTGATGAGCAATAGTGGAATTCATTGCTCGAACAGATCTCGAGATTTCAGCCACGATTAAGTGTAAACAGGAAAGTTCTTCAAAAAGTACTCATTATCTCATAATAGTTTTTCCTCGTCGTGCCATTGATTATGAATTTTTGTTTCGAGTGCATTTTGATTTCCAGGTCAGTTCTTAAATCTACAAGCTCTAGGTGTAGTTCTTCCGAGTTGTTGGGTGGATTAACACTAGGTCTTTCCTTTGGAATACATCTCTAAATCTCTGATCTAGTGCAAGAAAGGGAATCATTAAAGAGATGCTACTTCAAATATCCATTCTCCTTTTTATGGATAACTTAGAATGTACCATACAATCCATTAGTTGCAATATGATTGTTTTGTTGGAAATTACGAATTAGACCTTTAAACTCCCAATAAACTTTGCTAATTGTTCTCTCTTTTGAATCCCAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTTATCGCTTCAAACAAGGACCGCAACGTCTATGAATTAAGATACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGAGGTTCAAGGCCTATGTTTTGGAAGCATCGTTTGTAGTAGGAATTAAGCTTGTTGAAATTATATTTCCATACTTTGTCTTGAAGCTTTCCATATAGATCAGCAAGGATTCTTTTGGGTTATGAGATTATGCAACTCTTGTTTACTGCTGAAGTTTTATCTATAAATTTTGTTCACGAAGCTCCCCTTCTTTTGGTTGGTTGTTTT

mRNA sequence

CTCAAAACCCTAAAATCAGCGCCGATTGTTGCGTAACATTTCTACAGGAAATTTGGGCAACGAGTTGCAGAGAAGAAGCAAAAATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGTTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCTTCTTTAGAGAAGTTCCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGCGACAAGAACAAGATCACCGTTAACTCCGATAGCAACTTCTCCAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTTATCGCTTCAAACAAGGACCGCAACGTCTATGAATTAAGATACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGAGGTTCAAGGCCTATGTTTTGGAAGCATCGTTTGTAGTAGGAATTAAGCTTGTTGAAATTATATTTCCATACTTTGTCTTGAAGCTTTCCATATAGATCAGCAAGGATTCTTTTGGGTTATGAGATTATGCAACTCTTGTTTACTGCTGAAGTTTTATCTATAAATTTTGTTCACGAAGCTCCCCTTCTTTTGGTTGGTTGTTTT

Coding sequence (CDS)

ATGAGCCGTGGAGCAGCAGCATCCGGTGGCCCCAAGGGCAAGAAGAAGGGTTCGACCTTTGTCATCGATTGTGCGAAGCCAGTTGAGGACAAGATCATGGACATCGCTTCTTTAGAGAAGTTCCTTCTCGAGAGGATCAAGGTTGGCGGCAAAGCTGGGGCACTTGGTGACTCGGTTACCGTCACTCGCGACAAGAACAAGATCACCGTTAACTCCGATAGCAACTTCTCCAAGAGGTATCTTAAATACTTGACTAAGAAGTATTTGAAGAAACACAATGTTAGAGATTGGCTTCGGGTTATCGCTTCAAACAAGGACCGCAACGTCTATGAATTAAGATACTTCAACATTGCTGAGAATGAGGGCGAGGAAGAGGATTGA

Protein sequence

MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVTVTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED

Homology

[Close]

BLAST of CmaCh08G004250 vs. ExPASy Swiss-Prot
Match: Q9M9W1 (60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 6.9e-52
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CmaCh08G004250 vs. ExPASy Swiss-Prot
Match: Q9FE58 (60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-51
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA+   KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]

BLAST of CmaCh08G004250 vs. ExPASy Swiss-Prot
Match: Q9SRX7 (Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 9.4e-41
Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           M+R  A S G   KKKG +FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

[Close]

BLAST of CmaCh08G004250 vs. ExPASy Swiss-Prot
Match: P47198 (60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-31
Identity = 77/121 (63.64%), Postives = 92/121 (76.03%), Query Frame = 0


Query: 7   ASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VTVTRDK 66
           A GG K KK+   F +DC  PVED IMD A+ E+FL ERIKV GKAG LG   VT+ R K
Sbjct: 9   AKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERSK 68

Query: 67  NKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEE 126
           +KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EEE
Sbjct: 69  SKITVTSEEPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEEE 126

[Close]

BLAST of CmaCh08G004250 vs. ExPASy Swiss-Prot
Match: Q98TF8 (60S ribosomal protein L22 OS=Gallus gallus OX=9031 GN=RPL22 PE=2 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.3e-31
Identity = 77/122 (63.11%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 6   AASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDS-VTVTRD 65
           AA GG K KK+   F +DC  PVED IMD A+ E+FL ERIKV GKAG LG   VT+ R 
Sbjct: 8   AAKGGKK-KKQVLKFTLDCTHPVEDGIMDAANFEQFLQERIKVNGKAGNLGGGVVTIERS 67

Query: 66  KNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEE 125
           K+KITV S+  FSKRYLKYLTKKYLKK+N+RDWLRV+A++K+   YELRYF I ++E EE
Sbjct: 68  KSKITVTSEVPFSKRYLKYLTKKYLKKNNLRDWLRVVANSKES--YELRYFQINQDEEEE 126

Query: 126 ED 127
           E+
Sbjct: 128 EE 126

[Close]

BLAST of CmaCh08G004250 vs. TAIR 10
Match: AT3G05560.1 (Ribosomal L22e protein family )

HSP 1 Score: 204.5 bits (519), Expect = 4.9e-53
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CmaCh08G004250 vs. TAIR 10
Match: AT3G05560.2 (Ribosomal L22e protein family )

HSP 1 Score: 204.5 bits (519), Expect = 4.9e-53
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CmaCh08G004250 vs. TAIR 10
Match: AT3G05560.3 (Ribosomal L22e protein family )

HSP 1 Score: 204.5 bits (519), Expect = 4.9e-53
Identity = 105/126 (83.33%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA    KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSVT
Sbjct: 1   MSRGGAAVA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVT 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           EGEEED
Sbjct: 121 EGEEED 124

[Close]

BLAST of CmaCh08G004250 vs. TAIR 10
Match: AT5G27770.1 (Ribosomal L22e protein family )

HSP 1 Score: 201.1 bits (510), Expect = 5.4e-52
Identity = 103/126 (81.75%), Postives = 115/126 (91.27%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           MSRG AA+   KGKKKG +F IDC+KPV+DKIM+IASLEKFL ERIKVGGKAGALGDSV+
Sbjct: 1   MSRGNAAAA--KGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR+K+KITV +D  FSKRYLKYLTKKYLKKHNVRDWLRVIA+NKDRN+YELRYFNIAEN
Sbjct: 61  ITREKSKITVTADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAEN 120

Query: 121 EGEEED 127
           E EEED
Sbjct: 121 EAEEED 124

[Close]

BLAST of CmaCh08G004250 vs. TAIR 10
Match: AT1G02830.1 (Ribosomal L22e protein family )

HSP 1 Score: 167.5 bits (423), Expect = 6.7e-42
Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 0


Query: 1   MSRGAAASGGPKGKKKGSTFVIDCAKPVEDKIMDIASLEKFLLERIKVGGKAGALGDSVT 60
           M+R  A S G   KKKG +FVIDC+KPV+D I++IA+LEKFL ERIKV GKAGALG+SV+
Sbjct: 1   MARVGAKSSGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVS 60

Query: 61  VTRDKNKITVNSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAEN 120
           +TR   KI VN++SNFSKRYLKYLTKKYLKK+N+RDWLRVIASNKD+NVYE+RYF I + 
Sbjct: 61  ITRYNGKINVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRIDDE 120

Query: 121 EGEEED 127
               E+
Sbjct: 121 VASYEE 126

The following BLAST results are available for this feature:

BLAST of CmaCh08G004250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9W1	6.9e-52	83.33	60S ribosomal protein L22-2 OS=Arabidopsis thaliana OX=3702 GN=RPL22B PE=2 SV=1	[more]
Q9FE58	7.7e-51	81.75	60S ribosomal protein L22-3 OS=Arabidopsis thaliana OX=3702 GN=RPL22C PE=2 SV=1	[more]
Q9SRX7	9.4e-41	68.25	Putative 60S ribosomal protein L22-1 OS=Arabidopsis thaliana OX=3702 GN=RPL22A P...	[more]
P47198	1.4e-31	63.64	60S ribosomal protein L22 OS=Rattus norvegicus OX=10116 GN=Rpl22 PE=2 SV=2	[more]
Q98TF8	2.3e-31	63.11	60S ribosomal protein L22 OS=Gallus gallus OX=9031 GN=RPL22 PE=2 SV=1	[more]

BLAST of CmaCh08G004250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05560.1	4.9e-53	83.33	Ribosomal L22e protein family	[more]
AT3G05560.2	4.9e-53	83.33	Ribosomal L22e protein family	[more]
AT3G05560.3	4.9e-53	83.33	Ribosomal L22e protein family	[more]
AT5G27770.1	5.4e-52	81.75	Ribosomal L22e protein family	[more]
AT1G02830.1	6.7e-42	68.25	Ribosomal L22e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002671	Ribosomal protein L22e	PFAM	PF01776	Ribosomal_L22e	coord: 16..124 e-value: 2.9E-46 score: 156.3
IPR002671	Ribosomal protein L22e	PANTHER	PTHR10064	60S RIBOSOMAL PROTEIN L22	coord: 1..126
IPR038526	Ribosomal protein L22e superfamily	GENE3D	3.30.1360.210		coord: 7..126 e-value: 7.6E-57 score: 192.5
None	No IPR available	PANTHER	PTHR10064:SF16	60S RIBOSOMAL PROTEIN L22-2	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G004250.1	CmaCh08G004250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome