CmaCh08G003420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G003420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionPlant protein of unknown function (DUF868)
LocationCma_Chr08: 1960386 .. 1961321 (+)
RNA-Seq ExpressionCmaCh08G003420
SyntenyCmaCh08G003420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGATTTTCCTTCTTGTTTCGGCGAAAATGGCGTCCAAATTGCAGATTCTTCGTCTTCTTCTTCTTCGTCGTCTTCGAGTATCAGTAAAGCCGCTCAAAACCTAGTCACCTGCGTCTACCAGTGTAAGTTACGCGGCCGATTGAGCTTCATCGTTCTAACATGGACCAAGCATTTGATGGGACAAGGTCTCTCGCTTCAAATCGAAAACTCTGCTAATCAATACCTCTGTAAGGTAGAAATTAAGCCGTGGCTGTTCTCCAAAAAGAGAGGATCGAAGATCGTCGACGTTGATTTCAATAAAATGGAGATATACTGGGATTTAGCAAACGCCAAATTCGGCTGCGGACCGGAGCCGGAGGAAGGATTCTTCGTTGCTGTGGTATTCGATCGAGAGCTCGTATTCCTCGTCGGTGATTTACCGACGGAAGCTTCCAAGAAGATCACCGGCGTCTCCACTACCACGGCCACGGCGGCGGTGTTTGTGGCGAGGAGAGAGCACGTGTTCGGGAAGAAATCGTACTACGCGAAGGCTCAATTCAGCGAGAAAGGAGAAACGCACAATCTGTGGATCGAATGCGATACTAGTGGAGGATTGAAGGAGCCGAGTTTAGTGATTCGAATCGACAGCAAGACGGCGATGCAGATCAAGAGGCTGAAATGGAAGTTCAGAGGGAATCATACAATTATGGTGGACGGAATTCCGGTGCAGGTCATGTGGGATGTTCATAATTGGCTCTTTGGAAGCTCCGCCATGAGTAGTGCTGTGTTCATGTTTCAAACGCATAAGAGCAGTGGAAGCCATAGCCAATCCAGTTTTGATTCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTACTGTCAACAGAGTAAAGATTCGAAGTTGCAGGGTTTGGATTTCTCCTTGATGTTATATGCTTGGAGAAATGAATGA

mRNA sequence

ATGAAGGATTTTCCTTCTTGTTTCGGCGAAAATGGCGTCCAAATTGCAGATTCTTCGTCTTCTTCTTCTTCGTCGTCTTCGAGTATCAGTAAAGCCGCTCAAAACCTAGTCACCTGCGTCTACCAGTGTAAGTTACGCGGCCGATTGAGCTTCATCGTTCTAACATGGACCAAGCATTTGATGGGACAAGGTCTCTCGCTTCAAATCGAAAACTCTGCTAATCAATACCTCTGTAAGGTAGAAATTAAGCCGTGGCTGTTCTCCAAAAAGAGAGGATCGAAGATCGTCGACGTTGATTTCAATAAAATGGAGATATACTGGGATTTAGCAAACGCCAAATTCGGCTGCGGACCGGAGCCGGAGGAAGGATTCTTCGTTGCTGTGGTATTCGATCGAGAGCTCGTATTCCTCGTCGGTGATTTACCGACGGAAGCTTCCAAGAAGATCACCGGCGTCTCCACTACCACGGCCACGGCGGCGGTGTTTGTGGCGAGGAGAGAGCACGTGTTCGGGAAGAAATCGTACTACGCGAAGGCTCAATTCAGCGAGAAAGGAGAAACGCACAATCTGTGGATCGAATGCGATACTAGTGGAGGATTGAAGGAGCCGAGTTTAGTGATTCGAATCGACAGCAAGACGGCGATGCAGATCAAGAGGCTGAAATGGAAGTTCAGAGGGAATCATACAATTATGGTGGACGGAATTCCGGTGCAGGTCATGTGGGATGTTCATAATTGGCTCTTTGGAAGCTCCGCCATGAGTAGTGCTGTGTTCATGTTTCAAACGCATAAGAGCAGTGGAAGCCATAGCCAATCCAGTTTTGATTCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTACTGTCAACAGAGTAAAGATTCGAAGTTGCAGGGTTTGGATTTCTCCTTGATGTTATATGCTTGGAGAAATGAATGA

Coding sequence (CDS)

ATGAAGGATTTTCCTTCTTGTTTCGGCGAAAATGGCGTCCAAATTGCAGATTCTTCGTCTTCTTCTTCTTCGTCGTCTTCGAGTATCAGTAAAGCCGCTCAAAACCTAGTCACCTGCGTCTACCAGTGTAAGTTACGCGGCCGATTGAGCTTCATCGTTCTAACATGGACCAAGCATTTGATGGGACAAGGTCTCTCGCTTCAAATCGAAAACTCTGCTAATCAATACCTCTGTAAGGTAGAAATTAAGCCGTGGCTGTTCTCCAAAAAGAGAGGATCGAAGATCGTCGACGTTGATTTCAATAAAATGGAGATATACTGGGATTTAGCAAACGCCAAATTCGGCTGCGGACCGGAGCCGGAGGAAGGATTCTTCGTTGCTGTGGTATTCGATCGAGAGCTCGTATTCCTCGTCGGTGATTTACCGACGGAAGCTTCCAAGAAGATCACCGGCGTCTCCACTACCACGGCCACGGCGGCGGTGTTTGTGGCGAGGAGAGAGCACGTGTTCGGGAAGAAATCGTACTACGCGAAGGCTCAATTCAGCGAGAAAGGAGAAACGCACAATCTGTGGATCGAATGCGATACTAGTGGAGGATTGAAGGAGCCGAGTTTAGTGATTCGAATCGACAGCAAGACGGCGATGCAGATCAAGAGGCTGAAATGGAAGTTCAGAGGGAATCATACAATTATGGTGGACGGAATTCCGGTGCAGGTCATGTGGGATGTTCATAATTGGCTCTTTGGAAGCTCCGCCATGAGTAGTGCTGTGTTCATGTTTCAAACGCATAAGAGCAGTGGAAGCCATAGCCAATCCAGTTTTGATTCTTCTTCTTCTTCTTCTACTACTTCTTCTTCTTACTGTCAACAGAGTAAAGATTCGAAGTTGCAGGGTTTGGATTTCTCCTTGATGTTATATGCTTGGAGAAATGAATGA

Protein sequence

MKDFPSCFGENGVQIADSSSSSSSSSSSISKAAQNLVTCVYQCKLRGRLSFIVLTWTKHLMGQGLSLQIENSANQYLCKVEIKPWLFSKKRGSKIVDVDFNKMEIYWDLANAKFGCGPEPEEGFFVAVVFDRELVFLVGDLPTEASKKITGVSTTTATAAVFVARREHVFGKKSYYAKAQFSEKGETHNLWIECDTSGGLKEPSLVIRIDSKTAMQIKRLKWKFRGNHTIMVDGIPVQVMWDVHNWLFGSSAMSSAVFMFQTHKSSGSHSQSSFDSSSSSSTTSSSYCQQSKDSKLQGLDFSLMLYAWRNE
Homology
BLAST of CmaCh08G003420 vs. TAIR 10
Match: AT5G28150.1 (Plant protein of unknown function (DUF868) )

HSP 1 Score: 314.7 bits (805), Expect = 8.3e-86
Identity = 161/311 (51.77%), Postives = 224/311 (72.03%), Query Frame = 0

Query: 1   MKDFPSCFGENGVQIADSSSSSSSSSSSISKAAQNLVTCVYQCKLRGRLSFIVLTWTKHL 60
           MKDFPSCFGENGVQ+ADSSSSS+S      K AQNLVTC+YQC++RGR   I +TWTK+L
Sbjct: 1   MKDFPSCFGENGVQVADSSSSSNS-----GKNAQNLVTCIYQCRIRGRNCLITVTWTKNL 60

Query: 61  MGQGLSLQIENSANQYLCKVEIKPWLFSKKRGSKIVDVDFNKMEIYWDLANAKFGCGPEP 120
           MGQ +++ +++S NQ LCKVEIKPWLF+K++GSK ++     ++++WDL++AKFG GPE 
Sbjct: 61  MGQSVTVGVDDSCNQSLCKVEIKPWLFTKRKGSKSLEAYSCNIDVFWDLSSAKFGSGPEA 120

Query: 121 EEGFFVAVVFDRELVFLVGDLPTEASKKITGVSTTTATAAVFVARREHVFGKKSYYAKAQ 180
             GF+V VV D+E+V L+GD+  EA KK    ++ ++  AVF+A++EHVFGK+ +  KAQ
Sbjct: 121 LGGFYVGVVVDKEMVLLLGDMKKEAFKKTN--ASPSSLGAVFIAKKEHVFGKRVFATKAQ 180

Query: 181 FSEKGETHNLWIECDTSGGLKEPSLVIRIDSKTAMQIKRLKWKFRGNHTIMVDGIPVQVM 240
               G+ H+L IECDT+  + +P LV+R+D KT +Q+KRLKWKFRGN TI+V+ + V+V+
Sbjct: 181 LFADGKFHDLLIECDTN--VTDPCLVVRVDGKTLLQVKRLKWKFRGNDTIVVNKMTVEVL 240

Query: 241 WDVHNWLFGSSAMSSAVFMFQTHKSSGSHSQSSFDSSSSSSTTSSSYCQQSKDSKLQGLD 300
           WDVH+WLFG     +AVFMF+T +S    ++ S   S   +TT         +SK     
Sbjct: 241 WDVHSWLFGLPTTGNAVFMFRTCQS----TEKSLSFSQDVTTT---------NSKSHSFG 289

Query: 301 FSLMLYAWRNE 312
           FSL+LYAW++E
Sbjct: 301 FSLILYAWKSE 289

BLAST of CmaCh08G003420 vs. TAIR 10
Match: AT3G04860.1 (Plant protein of unknown function (DUF868) )

HSP 1 Score: 312.4 bits (799), Expect = 4.1e-85
Identity = 160/312 (51.28%), Postives = 222/312 (71.15%), Query Frame = 0

Query: 1   MKDFPSCFGENGVQIADSSSSSSSSSSSISKAAQNLVTCVYQCKLRGRLSFIVLTWTKHL 60
           M+DFPSC GENGVQIADSSSSSS+      + AQNLV C+Y+C++RGR   I +TWTK+L
Sbjct: 1   MRDFPSCSGENGVQIADSSSSSSA-----GRNAQNLVICIYRCRIRGRTCLITVTWTKNL 60

Query: 61  MGQGLSLQIENSANQYLCKVEIKPWLFSKKRGSKIVDVDFNKMEIYWDLANAKFGCGPEP 120
           MGQ +++ +++S N+ LCKVEIKPWLF+K++GSK ++     ++++WDL++AKFG  PEP
Sbjct: 61  MGQCVTVGVDDSCNRSLCKVEIKPWLFTKRKGSKTLEAYACNIDVFWDLSSAKFGSSPEP 120

Query: 121 EEGFFVAVVFDRELVFLVGDLPTEASKKITGVSTTTATAAVFVARREHVFGKKSYYAKAQ 180
             GF+V VV D+E+V L+GD+  EA KK T  + +++  AVF+A++EHVFGK+++  KAQ
Sbjct: 121 LGGFYVGVVVDKEMVLLLGDMKKEAFKK-TNAAPSSSLGAVFIAKKEHVFGKRTFATKAQ 180

Query: 181 FSEKGETHNLWIECDTSGGLKEPSLVIRIDSKTAMQIKRLKWKFRGNHTIMVDGIPVQVM 240
           FS  G+TH+L IECDTS  L +P L++R+D K  MQ++RL WKFRGN TI+V+ I V+V+
Sbjct: 181 FSGDGKTHDLVIECDTS--LSDPCLIVRVDGKILMQVQRLHWKFRGNDTIIVNRISVEVL 240

Query: 241 WDVHNWLFG-SSAMSSAVFMFQTHKSSGSHSQSSFDSSSSSSTTSSSYCQQSKDSKLQGL 300
           WDVH+W FG  S+  +AVFMF+T                 S   + S+ Q    SK Q  
Sbjct: 241 WDVHSWFFGLPSSPGNAVFMFRT---------------CQSVEKTWSFTQVPTSSKSQSF 289

Query: 301 DFSLMLYAWRNE 312
            FSL+LYAW+NE
Sbjct: 301 GFSLILYAWKNE 289

BLAST of CmaCh08G003420 vs. TAIR 10
Match: AT2G04220.1 (Plant protein of unknown function (DUF868) )

HSP 1 Score: 194.5 bits (493), Expect = 1.3e-49
Identity = 111/286 (38.81%), Postives = 163/286 (56.99%), Query Frame = 0

Query: 31  KAAQNLVTCVYQCKLRGRLSFIVLTWTKHLMGQGLSLQIENSAN--QYLCKVEIKPWLFS 90
           K AQ+ VTC+YQ  + G    + + W+K+LM   L + + N      Y CKV++KPW F 
Sbjct: 25  KTAQSTVTCIYQAHISGFWRNVTVLWSKNLMNHSLMVMVTNVEGDMNYCCKVDLKPWHFW 84

Query: 91  KKRGSKIVDVDFNKMEIYWDLANAKFGCGPEPEEGFFVAVVFDRELVFLVGDLPTEASKK 150
            K+G K  DV+ N +E+YWD  +AKF   PEP   F+VA+V + E+V LVGD   +A K+
Sbjct: 85  NKKGYKSFDVEGNPVEVYWDFRSAKFTSSPEPSSDFYVALVSEEEVVLLVGDYKKKAFKR 144

Query: 151 ITGVSTTTATAAVFVARREHVFGKKSYYAKAQFSEKGETHNLWIECDTSGGLKEPSLVIR 210
            T        AA+F  ++E+VFGKK +  +A+F ++ + H + +E  TSG  KEP + I 
Sbjct: 145 -TKSRPALVEAALFY-KKENVFGKKCFTTRAKFYDRKKEHEIIVESSTSGP-KEPEMWIS 204

Query: 211 IDSKTAMQIKRLKWKFRGNHTIMVDGIPVQVMWDVHNWLFGSSAMSSAVFMFQ---THKS 270
           ID    +Q+K L+WKFRGN T++VD  PVQV WDV++WLF        +F+F+   T  S
Sbjct: 205 IDGIVLIQVKNLQWKFRGNQTVLVDKQPVQVFWDVYDWLFSMPGTGHGLFIFKPGTTEDS 264

Query: 271 SGSHSQSSFDSSSSSSTTSSSYCQQSKDSKLQGLDFSLMLYAWRNE 312
               S         S T++ S    +K S     +F L L+A++ E
Sbjct: 265 DMEGSGHGGGGGGESDTSTGSRYYSTKSSNPWPPEFCLFLHAYKLE 307

BLAST of CmaCh08G003420 vs. TAIR 10
Match: AT4G12690.1 (Plant protein of unknown function (DUF868) )

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-49
Identity = 108/299 (36.12%), Postives = 176/299 (58.86%), Query Frame = 0

Query: 16  ADSSSSSSSSSSSIS-KAAQNLVTCVYQCKLRGRLSFIVLTWTKHLMGQGLSLQIENSAN 75
           ++SS++   +   ++ K AQ+ VTC+YQ  + G    + + W+K+LM   L++ + +   
Sbjct: 5   SESSTAEKITEDPVTYKTAQSSVTCIYQAHMVGFWRNVRVLWSKNLMNHSLTVMVTSVQG 64

Query: 76  --QYLCKVEIKPWLFSKKRGSKIVDVDFNKMEIYWDLANAKFGCGPEPEEGFFVAVVFDR 135
              Y CKV++KPW F  K+G K  +V+ N++++YWD  +AKF  GPEP   F+VA+V + 
Sbjct: 65  DMNYCCKVDLKPWHFWYKKGYKSFEVEGNQVDVYWDFRSAKFNGGPEPSSDFYVALVSEE 124

Query: 136 ELVFLVGDLPTEASKKITGVSTTTATAAVFVARREHVFGKKSYYAKAQFSEKGETHNLWI 195
           E+V L+GD   +A K+ T    +   AA+F  ++E+VFGKK +  +A+F ++   H + +
Sbjct: 125 EVVLLLGDHKKKAFKR-TKSRPSLVDAALFY-KKENVFGKKIFSTRAKFHDRKREHEIVV 184

Query: 196 ECDTSGGLKEPSLVIRIDSKTAMQIKRLKWKFRGNHTIMVDGIPVQVMWDVHNWLFGSSA 255
           E  T  G KEP + I +D    +Q++ L+WKFRGN T++VD  PVQV WDV++WLF +  
Sbjct: 185 ESST--GAKEPEMWISVDGIVLVQVRNLQWKFRGNQTVLVDKEPVQVFWDVYDWLFSTPG 244

Query: 256 MSSAVFMFQTHKSSGSHSQSSFDSSSSSSTTSSSYCQQSKDSKLQGLDFSLMLYAWRNE 312
               +F+F+        S  + + S+SSS++SS +C              L LYAW+ E
Sbjct: 245 TGHGLFIFKPESGESETSNETKNCSASSSSSSSEFC--------------LFLYAWKLE 285

BLAST of CmaCh08G003420 vs. TAIR 10
Match: AT4G12690.2 (Plant protein of unknown function (DUF868) )

HSP 1 Score: 193.0 bits (489), Expect = 3.7e-49
Identity = 108/299 (36.12%), Postives = 176/299 (58.86%), Query Frame = 0

Query: 16  ADSSSSSSSSSSSIS-KAAQNLVTCVYQCKLRGRLSFIVLTWTKHLMGQGLSLQIENSAN 75
           ++SS++   +   ++ K AQ+ VTC+YQ  + G    + + W+K+LM   L++ + +   
Sbjct: 5   SESSTAEKITEDPVTYKTAQSSVTCIYQAHMVGFWRNVRVLWSKNLMNHSLTVMVTSVQG 64

Query: 76  --QYLCKVEIKPWLFSKKRGSKIVDVDFNKMEIYWDLANAKFGCGPEPEEGFFVAVVFDR 135
              Y CKV++KPW F  K+G K  +V+ N++++YWD  +AKF  GPEP   F+VA+V + 
Sbjct: 65  DMNYCCKVDLKPWHFWYKKGYKSFEVEGNQVDVYWDFRSAKFNGGPEPSSDFYVALVSEE 124

Query: 136 ELVFLVGDLPTEASKKITGVSTTTATAAVFVARREHVFGKKSYYAKAQFSEKGETHNLWI 195
           E+V L+GD   +A K+ T    +   AA+F  ++E+VFGKK +  +A+F ++   H + +
Sbjct: 125 EVVLLLGDHKKKAFKR-TKSRPSLVDAALFY-KKENVFGKKIFSTRAKFHDRKREHEIVV 184

Query: 196 ECDTSGGLKEPSLVIRIDSKTAMQIKRLKWKFRGNHTIMVDGIPVQVMWDVHNWLFGSSA 255
           E  T  G KEP + I +D    +Q++ L+WKFRGN T++VD  PVQV WDV++WLF +  
Sbjct: 185 ESST--GAKEPEMWISVDGIVLVQVRNLQWKFRGNQTVLVDKEPVQVFWDVYDWLFSTPG 244

Query: 256 MSSAVFMFQTHKSSGSHSQSSFDSSSSSSTTSSSYCQQSKDSKLQGLDFSLMLYAWRNE 312
               +F+F+        S  + + S+SSS++SS +C              L LYAW+ E
Sbjct: 245 TGHGLFIFKPESGESETSNETKNCSASSSSSSSEFC--------------LFLYAWKLE 285

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G28150.18.3e-8651.77Plant protein of unknown function (DUF868) [more]
AT3G04860.14.1e-8551.28Plant protein of unknown function (DUF868) [more]
AT2G04220.11.3e-4938.81Plant protein of unknown function (DUF868) [more]
AT4G12690.13.7e-4936.12Plant protein of unknown function (DUF868) [more]
AT4G12690.23.7e-4936.12Plant protein of unknown function (DUF868) [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008586Protein of unknown function DUF868, plantPFAMPF05910DUF868coord: 33..309
e-value: 6.2E-99
score: 331.1
IPR008586Protein of unknown function DUF868, plantPANTHERPTHR31972EXPRESSED PROTEINcoord: 1..310
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 268..293
NoneNo IPR availablePANTHERPTHR31972:SF67PLANT/T24G3-80 PROTEINcoord: 1..310

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G003420.1CmaCh08G003420.1mRNA