CmaCh08G002490 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G002490
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	EPIDERMAL PATTERNING FACTOR-like protein 9
Location	Cma_Chr08: 1408283 .. 1409199 (-)
RNA-Seq Expression	CmaCh08G002490
Synteny	CmaCh08G002490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATACTTTTTGAGTTCCATTCTCTCATTCTACAATTGCAGCAATTGGTTTCTTATCCTCTCTTTTTCAATGGCAAAAGCTGCGAAACCACTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGTTTCTCTCTCTCGGTTTACGTTCTTCGTCGCTTGATTTACTTTATTCATCTTCTCTCCGTATCTTTTTTCGCGTTCAGGACGATTCTCAACAGAGGACGACGTTTTCGCAAAATCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGGTTAGTTGTTCGTACTATACGGACGATAAATCTTTTTCGATTTTTTCCATTCAGGAATTCGCGTCTCGTTTCTTGATCTCTGTTTCGCGTTTCTGATCTCTTGAATGTACTTTTAAAGTAATCGATTAATGCTCGAGACTCGAAGCTATAATGTGTTTATGTTTGATGGAAATTTTAAAAAATTCAGATGAGAAATTCAAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAGCAAGTGCCAGTTGAAGGCAACGACCCGATCAATAGTGCTTACCACTATAGATGTGTATGTCATAGGTAATTTCATTTTAATCTCCCTAAATTTTTGTACCAATTTTCTTAGTTTTTTGTTCTTTCCAAGACAATTTGAGAGGTAGATTTGAGTCCTACCTTCCTTGAGTCTATTTTGTTTGTGTTACATAAATTTTCGGTCGGTTTTGTTGTAACATTTTTCGTTTGTTTTATTGATAATTGTTTAAATCGAAAGTTTGTAAGGATCTCTAAGCTGTTTGTTTGAATTAGATTTTCCTTAAAAAAAAATTCTCGATTAGTACTCC

mRNA sequence

AATACTTTTTGAGTTCCATTCTCTCATTCTACAATTGCAGCAATTGGTTTCTTATCCTCTCTTTTTCAATGGCAAAAGCTGCGAAACCACTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGACGATTCTCAACAGAGGACGACGTTTTCGCAAAATCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGATGAGAAATTCAAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAGCAAGTGCCAGTTGAAGGCAACGACCCGATCAATAGTGCTTACCACTATAGATGTGTATGTCATAGGTAATTTCATTTTAATCTCCCTAAATTTTTGTACCAATTTTCTTAGTTTTTTGTTCTTTCCAAGACAATTTGAGAGGTAGATTTGAGTCCTACCTTCCTTGAGTCTATTTTGTTTGTGTTACATAAATTTTCGGTCGGTTTTGTTGTAACATTTTTCGTTTGTTTTATTGATAATTGTTTAAATCGAAAGTTTGTAAGGATCTCTAAGCTGTTTGTTTGAATTAGATTTTCCTTAAAAAAAAATTCTCGATTAGTACTCC

Coding sequence (CDS)

ATGGCAAAAGCTGCGAAACCACTTCTTCTTCTCCTCCTTCTAGCCCTAATTCTCTGCTCTCTCTGCTCAACAATGGCGCTAAAAGGACGATTCTCAACAGAGGACGACGTTTTCGCAAAATCTCTGCCTCAATTCCGTTCCGTACAAACAACAATCGCGCCCGAGATGAGAAATTCAAGAAGGTTGATGATTGGTTCAACAGCACCGATATGTACTTATAATGAATGTAGAGGATGCAAATACAAGTGCAGAGCCGAGCAAGTGCCAGTTGAAGGCAACGACCCGATCAATAGTGCTTACCACTATAGATGTGTATGTCATAGGTAA

Protein sequence

MAKAAKPLLLLLLLALILCSLCSTMALKGRFSTEDDVFAKSLPQFRSVQTTIAPEMRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAYHYRCVCHR

Homology

[Close]

BLAST of CmaCh08G002490 vs. ExPASy Swiss-Prot
Match: Q9SV72 (EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EPFL9 PE=1 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.2e-24
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 46  RSVQTTIA--PE---MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAY 105
           RS++ T++  P+   + + RR MIGSTAP CTYNECRGC+YKCRAEQVPVEGNDPINSAY
Sbjct: 35  RSIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY 94

Query: 106 HYRCVCHR 109
           HYRCVCHR
Sbjct: 95  HYRCVCHR 102

[Close]

BLAST of CmaCh08G002490 vs. TAIR 10
Match: AT4G12970.1 (stomagen )

HSP 1 Score: 111.7 bits (278), Expect = 3.7e-25
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 46  RSVQTTIA--PE---MRNSRRLMIGSTAPICTYNECRGCKYKCRAEQVPVEGNDPINSAY 105
           RS++ T++  P+   + + RR MIGSTAP CTYNECRGC+YKCRAEQVPVEGNDPINSAY
Sbjct: 35  RSIENTVSLLPQVHLLNSRRRHMIGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY 94

Query: 106 HYRCVCHR 109
           HYRCVCHR
Sbjct: 95  HYRCVCHR 102

The following BLAST results are available for this feature:

BLAST of CmaCh08G002490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SV72	5.2e-24	73.53	EPIDERMAL PATTERNING FACTOR-like protein 9 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]

BLAST of CmaCh08G002490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G12970.1	3.7e-25	73.53	stomagen	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044858	Stomagen, C-terminal domain	PFAM	PF16851	Stomagen	coord: 58..107 e-value: 1.4E-33 score: 114.6
IPR038572	Stomagen, C-terminal domain superfamily	GENE3D	2.20.25.390	Stomagen	coord: 64..108 e-value: 5.0E-31 score: 108.3
IPR031753	Stomagen	PANTHER	PTHR37239	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 9	coord: 5..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G002490.1	CmaCh08G002490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:2000123	positive regulation of stomatal complex development