CmaCh08G001980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G001980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Natterin-3 like
Location	Cma_Chr08: 1107224 .. 1108412 (+)
RNA-Seq Expression	CmaCh08G001980
Synteny	CmaCh08G001980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCAATTTCCGAGGTTTGTAGTCCTCAAATCAAAGTATAATCACAACTACTTGCGCTATTTGGATGAAACTTGTTCACAGGTGAATATGTTTCTGCGGTACTCGGGAAAGGAGATTCTTACTCCATACACAAAGTTTGAGTTCGAACAAGCTAAACGTGACCCGTCTTTATTCCACATAAGATGTTGTTACAATAATAAGTACTGGACTAGTTGGGCTTGTGACAAACATTTTATTGTAGCGGGAGCTTACGAGAAAGAAGAAGATAAATCCAAATGGTCGTGCACACTATTTCATCCCGTTTATGACAGTTCTCGCAACCATTTTGATTTTGTCACGTTGGTCTTGGTTTTAACATAGTCGTATGGAGAATTGGTCCTCCTTATGGTCGGTTGCTAATAGAGATCTCTGCGATCTCAGTATAGTTATTAACTGGAAATTAGTGTGGTCATTACCTAAATTTATTGCTTTTAAAGGTGATAATGGTTCTTATCTTAGTGCTCGCTCAATTGACAATCGTCCATATCTACAATTTTCTTCCAACAATATTGACGATCCTACCATTCAGATGGAGACTTTCATCACAAATGATGGAAAATTTTGCATCAAATCAGTTTACTTCCAGAAATTTTGAAGACGTGACACATCTAATTAGATTTTTGCTGACTATTATGAGACCACTACTCAAAATCTCGATACTTTATTTTTGCCCACTAAAGTTTCACCCGACGTTGTTGCTCTTTGTAACTTGGGTAATGACAACTTTGTTAAAAGATATACTATAGGCAGCAAAATAAGTTATCTCATGGCAGCTGTGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAGAAGTTGCAAATAATTCAAACATACCCAATACTGAATCTGTGACTTTCTCATACACAAACAACGGACTGAGCACATGGGCTTCTTTAGTCTCAACAAAATTGGACATCAAGATAACGGTCGAAGCAGAAATTCCGCTCATTGTTGATGGAAAGATGATTGAAACGTCGTCAACTATGTTTGTTGGAGAATACACATGGGGTAAAACCATAACAACATCGAAAGACTCAAGAGATATATGA

mRNA sequence

ATGGTGCAATTTCCGAGGTTTGTAGTCCTCAAATCAAAGTATAATCACAACTACTTGCGCTATTTGGATGAAACTTGTTCACAGGTGAATATGTTTCTGCGGTACTCGGGAAAGGAGATTCTTACTCCATACACAAAGTTTGAGTTCGAACAAGCTAAACGTGACCCGTCTTTATTCCACATAAGATGTTGTTACAATAATAAGTACTGGACTAGTTGGGCTTGTGACAAACATTTTATTGTAGCGGGAGCTTACGAGAAAGAAGAAGATAAATCCAAATGGTCGTGCACACTATTTCATCCCGTTTATGACAGTTCTCGCAACCATTTTGATTTTGTCACATATACTATAGGCAGCAAAATAAGTTATCTCATGGCAGCTGTGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAGAAGTTGCAAATAATTCAAACATACCCAATACTGAATCTGTGACTTTCTCATACACAAACAACGGACTGAGCACATGGGCTTCTTTAGTCTCAACAAAATTGGACATCAAGATAACGGTCGAAGCAGAAATTCCGCTCATTGTTGATGGAAAGATGATTGAAACGTCGTCAACTATGTTTGTTGGAGAATACACATGGGGTAAAACCATAACAACATCGAAAGACTCAAGAGATATATGA

Coding sequence (CDS)

ATGGTGCAATTTCCGAGGTTTGTAGTCCTCAAATCAAAGTATAATCACAACTACTTGCGCTATTTGGATGAAACTTGTTCACAGGTGAATATGTTTCTGCGGTACTCGGGAAAGGAGATTCTTACTCCATACACAAAGTTTGAGTTCGAACAAGCTAAACGTGACCCGTCTTTATTCCACATAAGATGTTGTTACAATAATAAGTACTGGACTAGTTGGGCTTGTGACAAACATTTTATTGTAGCGGGAGCTTACGAGAAAGAAGAAGATAAATCCAAATGGTCGTGCACACTATTTCATCCCGTTTATGACAGTTCTCGCAACCATTTTGATTTTGTCACATATACTATAGGCAGCAAAATAAGTTATCTCATGGCAGCTGTGAAAAATATCGATGAATTTTCACGCTTACATATGGTTGAGCTTGTTCTTTCACGACAAATCAACAATGTCGTATTTTGTCTTTTTGATGCTAGGATCCATGATCAAGTTGTTATCGTATTAGCAACTACAGAAGTTGCAAATAATTCAAACATACCCAATACTGAATCTGTGACTTTCTCATACACAAACAACGGACTGAGCACATGGGCTTCTTTAGTCTCAACAAAATTGGACATCAAGATAACGGTCGAAGCAGAAATTCCGCTCATTGTTGATGGAAAGATGATTGAAACGTCGTCAACTATGTTTGTTGGAGAATACACATGGGGTAAAACCATAACAACATCGAAAGACTCAAGAGATATATGA

Protein sequence

MVQFPRFVVLKSKYNHNYLRYLDETCSQVNMFLRYSGKEILTPYTKFEFEQAKRDPSLFHIRCCYNNKYWTSWACDKHFIVAGAYEKEEDKSKWSCTLFHPVYDSSRNHFDFVTYTIGSKISYLMAAVKNIDEFSRLHMVELVLSRQINNVVFCLFDARIHDQVVIVLATTEVANNSNIPNTESVTFSYTNNGLSTWASLVSTKLDIKITVEAEIPLIVDGKMIETSSTMFVGEYTWGKTITTSKDSRDI

Homology

The following BLAST results are available for this feature:

BLAST of CmaCh08G001980 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh08G001980 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008998	Agglutinin domain	SMART	SM00791	agglutinin	coord: 2..141 e-value: 1.3E-11 score: 54.5
IPR008998	Agglutinin domain	PFAM	PF07468	Agglutinin	coord: 3..135 e-value: 6.7E-20 score: 71.8
None	No IPR available	GENE3D	2.170.15.10	Proaerolysin, chain A, domain 3	coord: 148..249 e-value: 5.1E-16 score: 60.7
None	No IPR available	GENE3D	2.80.10.50		coord: 3..147 e-value: 1.8E-40 score: 140.1
None	No IPR available	PANTHER	PTHR39244	NATTERIN-4	coord: 114..244 coord: 1..109
IPR036242	Agglutinin domain superfamily	SUPERFAMILY	50382	Agglutinin	coord: 3..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001980.1	CmaCh08G001980.1	mRNA