CmaCh08G001890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G001890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein SHORT-ROOT-like
Location	Cma_Chr08: 1066984 .. 1068495 (+)
RNA-Seq Expression	CmaCh08G001890
Synteny	CmaCh08G001890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGTCAACAAACAGGCTTTTTATGTTCTCCATAAGAAAGCATGGACATAACCCTTTTCACAGCTAAAGAATCCCCCACAACCTTTTTCAGCCAAAGCCATGATCATCGTCATCGTCATCGTCTTCATCGTCTTCGGTTCCCCAATTTAGCCATGCAAAGCTCCACCAGCCAGTCGTCGGAGTACTCACTCGACCACTCTCTGCCCGCCACTGTGGGAAAATGGGCCTCCACCCTTCTCAATGAGTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGCGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTCTGTAAAGTGACCGAAACTGGCCTCACTTGCTACAAAACCCTCATCACCGTTGCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAACGGTCTAAAATCACCACTAAACTCAAAAGTTTAGCTTCGATTTATAACAATTCAAAAATTTAAGTTGATGGGTTATAGCAAATTTAATTTATTTTTCTTTAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGGGCAATTCTAGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCCACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGATGAAGCCATTGCTATAAATTGCAATGGAGCTTTAAGAACCGTAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCATAAGCTCGAAAAATAAGTTCTTGAGCTATTTTGATGAGTGTCTTAGATTTTACACGCTCTACTTCAAGATGTTGGAAGAGTGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTAGAAAGAGAGTGTTCGAGAAACATTGTGAGGCTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCAAAAGGCTTGAAGAACGAGGTTTTTCATCGGCTCGATTTAGTGACGATGTGATGGATGACGTTAAGGCTTTGCTCAAAAGGTATAAACCCGGTTGGTCGTTGATGCATTGGACCGGTGCTACCGACACGAACCGAGATGAAGAAGAAGGTGGTGATGATTCAAATGGAATTTATTTGACATGGAAGGAAGAACCAGTGGTGTGGATTTCAGCATGGAAACCCTAGAGGGACA

mRNA sequence

TGGTCAACAAACAGGCTTTTTATGTTCTCCATAAGAAAGCATGGACATAACCCTTTTCACAGCTAAAGAATCCCCCACAACCTTTTTCAGCCAAAGCCATGATCATCGTCATCGTCATCGTCTTCATCGTCTTCGGTTCCCCAATTTAGCCATGCAAAGCTCCACCAGCCAGTCGTCGGAGTACTCACTCGACCACTCTCTGCCCGCCACTGTGGGAAAATGGGCCTCCACCCTTCTCAATGAGTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGCGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTCTGTAAAGTGACCGAAACTGGCCTCACTTGCTACAAAACCCTCATCACCGTTGCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGGGCAATTCTAGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCCACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGATGAAGCCATTGCTATAAATTGCAATGGAGCTTTAAGAACCGTAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCATAAGCTCGAAAAATAAGTTCTTGAGCTATTTTGATGAGTGTCTTAGATTTTACACGCTCTACTTCAAGATGTTGGAAGAGTGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTAGAAAGAGAGTGTTCGAGAAACATTGTGAGGCTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCAAAAGGCTTGAAGAACGAGGTTTTTCATCGGCTCGATTTAGTGACGATGTGATGGATGACGTTAAGGCTTTGCTCAAAAGGTATAAACCCGGTTGGTCGTTGATGCATTGGACCGGTGCTACCGACACGAACCGAGATGAAGAAGAAGGTGGTGATGATTCAAATGGAATTTATTTGACATGGAAGGAAGAACCAGTGGTGTGGATTTCAGCATGGAAACCCTAGAGGGACA

Coding sequence (CDS)

ATGGACATAACCCTTTTCACAGCTAAAGAATCCCCCACAACCTTTTTCAGCCAAAGCCATGATCATCGTCATCGTCATCGTCTTCATCGTCTTCGGTTCCCCAATTTAGCCATGCAAAGCTCCACCAGCCAGTCGTCGGAGTACTCACTCGACCACTCTCTGCCCGCCACTGTGGGAAAATGGGCCTCCACCCTTCTCAATGAGTGCGCTCGAGCTATCTCCGACAAAGACTCCAACAAAATCCACCATCTTCTTTGGATGTTGAACGAGCTCGCCTCCCCGTACGGCGACTCCGATCAGAAATTGGCTTATTACTTCTTGCAAGCTCTCTTCTGTAAAGTGACCGAAACTGGCCTCACTTGCTACAAAACCCTCATCACCGTTGCCGAGAAGAATTACTCCTTCGACTCCGCTCTCAAGCTCATCCTCAAGTTTCAAGAGGTAAGTCCGTGGATGACATTCGGGCACGTGGCATCGAACGGGGCAATTCTAGAGGCTCTCGAGCGAGAAACGAAGCTACATATCATCGACATAAGCGACACCCTTTGCACCCAATGGCCAACCCTATTAGAATCGCTAGCCACACGCAATGATGACACTCCACATCTCAAGCTCACGGTGGTATCAACAACAACAAAGGTGAAGTCTTTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCTTTCGAGTTCAATCCCATAACGAATCTTAACCAATTAAGCGACCTCGAGAACGAAGCTCTCAAAGTAGAAGAAGATGAAGCCATTGCTATAAATTGCAATGGAGCTTTAAGAACCGTAAAAATCGAGGAGAGAAACGCTGTGATTTCAATGTTGAAATCGTTAAAGCCTCGAGTTTTGACAATTGTTGAAGAAGAAGCTGATTTCATAAGCTCGAAAAATAAGTTCTTGAGCTATTTTGATGAGTGTCTTAGATTTTACACGCTCTACTTCAAGATGTTGGAAGAGTGCTTTGAAGCAACGAGCAATGAGAAATTGGGTTTAGAAAGAGAGTGTTCGAGAAACATTGTGAGGCTCTTGGGGTGTGGTAATGAAAGCGAACTCGAACGAGAGTTAACGAGCGAGAGAAGAGAAAAGGGAAAGCAATGGAGCAAAAGGCTTGAAGAACGAGGTTTTTCATCGGCTCGATTTAGTGACGATGTGATGGATGACGTTAAGGCTTTGCTCAAAAGGTATAAACCCGGTTGGTCGTTGATGCATTGGACCGGTGCTACCGACACGAACCGAGATGAAGAAGAAGGTGGTGATGATTCAAATGGAATTTATTTGACATGGAAGGAAGAACCAGTGGTGTGGATTTCAGCATGGAAACCCTAG

Protein sequence

MDITLFTAKESPTTFFSQSHDHRHRHRLHRLRFPNLAMQSSTSQSSEYSLDHSLPATVGKWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTVKIEERNAVISMLKSLKPRVLTIVEEEADFISSKNKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP

Homology

[Close]

BLAST of CmaCh08G001890 vs. ExPASy Swiss-Prot
Match: Q9SZF7 (Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1)

HSP 1 Score: 399.1 bits (1024), Expect = 6.9e-110
Identity = 210/410 (51.22%), Postives = 281/410 (68.54%), Query Frame = 0


Query: 60  KWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGL 119
           KWA ++L E ARA SDKD+ +   +LW LNEL+SPYGD++QKLA YFLQALF ++T +G 
Sbjct: 141 KWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQALFNRMTGSGE 200

Query: 120 TCYKTLITVA--EKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIID 179
            CY+T++T A  EK  SF+S  K +LKFQEVSPW TFGHVA+NGAILEA++ E K+HI+D
Sbjct: 201 RCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVDGEAKIHIVD 260

Query: 180 ISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKS-------LMKEIGQRMEKFAR 239
           IS T CTQWPTLLE+LATR+DDTPHL+LT V    K  +       +MKEIG RMEKFAR
Sbjct: 261 ISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFAR 320

Query: 240 LMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTV--KIEERNAVISMLKS 299
           LMGVPF+FN I ++  LS+ +   L V+ DE +AINC GA+  +  +   R+AVIS  + 
Sbjct: 321 LMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIASRGSPRDAVISSFRR 380

Query: 300 LKPRVLTIVEEEADFISSK-----NKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLE 359
           L+PR++T+VEEEAD +  +     ++FL  F ECLR++ + F+  EE F  TSNE+L LE
Sbjct: 381 LRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNERLMLE 440

Query: 360 RECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALL 419
           R   R IV L+ C      E   ++ERRE  ++WS+R+   GF +  +SD+V DDV+ALL
Sbjct: 441 RAAGRAIVDLVAC------EPSDSTERRETARKWSRRMRNSGFGAVGYSDEVADDVRALL 500

Query: 420 KRYKPG-WSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP 453
           +RYK G WS++                 D+ GI+L W+++PVVW SAW+P
Sbjct: 501 RRYKEGVWSMVQC--------------PDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of CmaCh08G001890 vs. ExPASy Swiss-Prot
Match: A2XIA8 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.9e-104
Identity = 209/435 (48.05%), Postives = 276/435 (63.45%), Query Frame = 0


Query: 55  PATVGKWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKV 114
           P++ G+WA+ LL ECARA++ +DS ++  L+WMLNELASPYGD DQKLA YFLQ LF ++
Sbjct: 181 PSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARL 240

Query: 115 TETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEAL------- 174
           T +G    +TL T +++N SFDS  +  LKFQE+SPW  FGHVA+NGAILE+        
Sbjct: 241 TTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAG 300

Query: 175 ------------ERETKLHIIDISDTLCTQWPTLLESLATR-NDDTPHLKLTVVSTT--- 234
                          T+LHI+D+S+T CTQWPTLLE+LATR +DDTPHL +T V  T   
Sbjct: 301 AAAASSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAP 360

Query: 235 -TKVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINC 294
               + +M+EIGQR+EKFARLMGVPF F  + +   L+DL+  AL + E     A+A+NC
Sbjct: 361 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHAGDLADLDLAALDLREGGATAALAVNC 420

Query: 295 NGALRTVKIEERNAVISMLKSLKPRVLTIVEEEADFIS----------SKNKFLSYFDEC 354
             ALR V    R+A ++ L+ L+PRV+T+VEEEAD  +          +   F+  F E 
Sbjct: 421 VNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEG 480

Query: 355 LRFYTLYFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQW 414
           LRF++ Y   LEE F  TSNE+L LER   R IV L+ C          ++ERRE    W
Sbjct: 481 LRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSC------PASQSAERRETAASW 540

Query: 415 SKRLEERGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYL 453
           ++R+   GFS A FS+DV DDV++LL+RYK GWS+    GATD     +  G  + G +L
Sbjct: 541 ARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATD-----DAAGAAAAGAFL 600

[Close]

BLAST of CmaCh08G001890 vs. ExPASy Swiss-Prot
Match: Q75I13 (Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 2.5e-104
Identity = 209/435 (48.05%), Postives = 276/435 (63.45%), Query Frame = 0


Query: 55  PATVGKWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKV 114
           P++ G+WA+ LL ECARA++ +DS ++  L+WMLNELASPYGD DQKLA YFLQ LF ++
Sbjct: 181 PSSSGRWAAQLLMECARAVAGRDSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARL 240

Query: 115 TETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEAL------- 174
           T +G    +TL T +++N SFDS  +  LKFQE+SPW  FGHVA+NGAILE+        
Sbjct: 241 TTSGPRTLRTLATASDRNASFDSTRRTALKFQELSPWTPFGHVAANGAILESFLEAAAAG 300

Query: 175 ------------ERETKLHIIDISDTLCTQWPTLLESLATR-NDDTPHLKLTVVSTT--- 234
                          T+LHI+D+S+T CTQWPTLLE+LATR +DDTPHL +T V  T   
Sbjct: 301 AAASSSSSSSSSTPPTRLHILDLSNTFCTQWPTLLEALATRSSDDTPHLSITTVVPTAAP 360

Query: 235 -TKVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINC 294
               + +M+EIGQR+EKFARLMGVPF F  + +   L+DL+  AL + E     A+A+NC
Sbjct: 361 SAAAQRVMREIGQRLEKFARLMGVPFSFRAVHHSGDLADLDLAALDLREGGATAALAVNC 420

Query: 295 NGALRTVKIEERNAVISMLKSLKPRVLTIVEEEADFIS----------SKNKFLSYFDEC 354
             ALR V    R+A ++ L+ L+PRV+T+VEEEAD  +          +   F+  F E 
Sbjct: 421 VNALRGV-ARGRDAFVASLRRLEPRVVTVVEEEADLAAPEADASSEADTDAAFVKVFGEG 480

Query: 355 LRFYTLYFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQW 414
           LRF++ Y   LEE F  TSNE+L LER   R IV L+ C          ++ERRE    W
Sbjct: 481 LRFFSAYMDSLEESFPKTSNERLSLERAVGRAIVDLVSC------PASQSAERRETAASW 540

Query: 415 SKRLEERGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYL 453
           ++R+   GFS A FS+DV DDV++LL+RYK GWS+    GATD     +  G  + G +L
Sbjct: 541 ARRMRSAGFSPAAFSEDVADDVRSLLRRYKEGWSMRDAGGATD-----DAAGAAAAGAFL 600

[Close]

BLAST of CmaCh08G001890 vs. ExPASy Swiss-Prot
Match: A2YN56 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 1.7e-100
Identity = 203/432 (46.99%), Postives = 274/432 (63.43%), Query Frame = 0


Query: 59  GKWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETG 118
           G+WAS LL ECAR+++ +DS ++  L+WMLNELASPYGD +QKLA YFLQ LF ++T +G
Sbjct: 189 GRWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASG 248

Query: 119 LTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILE-------ALERET 178
               +TL   +++N SFDS  +  L+FQE+SPW +FGHVA+NGAILE       A   ET
Sbjct: 249 QRTLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSET 308

Query: 179 -KLHIIDISDTLCTQWPTLLESLATRN-DDTPHLKLTVV------STTTKVKSLMKEIGQ 238
            + HI+D+S+T CTQWPTLLE+LATR+ D+TPHL +T V      + T  V+ +M+EIGQ
Sbjct: 309 QRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQ 368

Query: 239 RMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINCNGALRTV---KIE 298
           RMEKFARLMGVPF F  + +   L++L+ +AL + E     A+A+NC  +LR V   +  
Sbjct: 369 RMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRAR 428

Query: 299 ERNAVISMLKSLKPRVLTIVEEEADFISS--------------KNKFLSYFDECLRFYTL 358
            R+A  + L+ L PRV+T+VEEEAD ++S              +  FL  F E LRF++ 
Sbjct: 429 RRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSA 488

Query: 359 YFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEE 418
           Y   LEE F  TSNE+L LER   R IV L+ C     +      ERRE    W++R+  
Sbjct: 489 YMDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESM------ERRETAASWARRMRS 548

Query: 419 RGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDS---NGIYLTWK 453
            GFS   FS+DV DDV++LL+RY+ GWS+             E G DDS    G++L WK
Sbjct: 549 AGFSPVAFSEDVADDVRSLLRRYREGWSM------------REAGTDDSAAGAGVFLAWK 602

[Close]

BLAST of CmaCh08G001890 vs. ExPASy Swiss-Prot
Match: Q8H2X8 (Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2)

HSP 1 Score: 367.5 bits (942), Expect = 2.2e-100
Identity = 203/432 (46.99%), Postives = 274/432 (63.43%), Query Frame = 0


Query: 59  GKWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETG 118
           G+WAS LL ECAR+++ +DS ++  L+WMLNELASPYGD +QKLA YFLQ LF ++T +G
Sbjct: 189 GRWASQLLLECARSVAARDSQRVQQLMWMLNELASPYGDVEQKLASYFLQGLFARLTASG 248

Query: 119 LTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILE-------ALERET 178
               +TL   +++N SFDS  +  L+FQE+SPW +FGHVA+NGAILE       A   ET
Sbjct: 249 PRTLRTLAAASDRNTSFDSTRRTALRFQELSPWSSFGHVAANGAILESFLEVAAAASSET 308

Query: 179 -KLHIIDISDTLCTQWPTLLESLATRN-DDTPHLKLTVV------STTTKVKSLMKEIGQ 238
            + HI+D+S+T CTQWPTLLE+LATR+ D+TPHL +T V      + T  V+ +M+EIGQ
Sbjct: 309 QRFHILDLSNTFCTQWPTLLEALATRSADETPHLSITTVVSAAPSAPTAAVQRVMREIGQ 368

Query: 239 RMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEE---DEAIAINCNGALRTV---KIE 298
           RMEKFARLMGVPF F  + +   L++L+ +AL + E     A+A+NC  +LR V   +  
Sbjct: 369 RMEKFARLMGVPFRFRAVHHSGDLAELDLDALDLREGGATTALAVNCVNSLRGVVPGRAR 428

Query: 299 ERNAVISMLKSLKPRVLTIVEEEADFISS--------------KNKFLSYFDECLRFYTL 358
            R+A  + L+ L PRV+T+VEEEAD ++S              +  FL  F E LRF++ 
Sbjct: 429 RRDAFAASLRRLDPRVVTVVEEEADLVASDPDASSATEEGGDTEAAFLKVFGEGLRFFSA 488

Query: 359 YFKMLEECFEATSNEKLGLERECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEE 418
           Y   LEE F  TSNE+L LER   R IV L+ C     +      ERRE    W++R+  
Sbjct: 489 YMDSLEESFPKTSNERLALERGAGRAIVDLVSCPASESM------ERRETAASWARRMRS 548

Query: 419 RGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDS---NGIYLTWK 453
            GFS   FS+DV DDV++LL+RY+ GWS+             E G DDS    G++L WK
Sbjct: 549 AGFSPVAFSEDVADDVRSLLRRYREGWSM------------REAGTDDSAAGAGVFLAWK 602

[Close]

BLAST of CmaCh08G001890 vs. TAIR 10
Match: AT4G37650.1 (GRAS family transcription factor )

HSP 1 Score: 399.1 bits (1024), Expect = 4.9e-111
Identity = 210/410 (51.22%), Postives = 281/410 (68.54%), Query Frame = 0


Query: 60  KWASTLLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGL 119
           KWA ++L E ARA SDKD+ +   +LW LNEL+SPYGD++QKLA YFLQALF ++T +G 
Sbjct: 141 KWADSVLLEAARAFSDKDTARAQQILWTLNELSSPYGDTEQKLASYFLQALFNRMTGSGE 200

Query: 120 TCYKTLITVA--EKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIID 179
            CY+T++T A  EK  SF+S  K +LKFQEVSPW TFGHVA+NGAILEA++ E K+HI+D
Sbjct: 201 RCYRTMVTAAATEKTCSFESTRKTVLKFQEVSPWATFGHVAANGAILEAVDGEAKIHIVD 260

Query: 180 ISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKS-------LMKEIGQRMEKFAR 239
           IS T CTQWPTLLE+LATR+DDTPHL+LT V    K  +       +MKEIG RMEKFAR
Sbjct: 261 ISSTFCTQWPTLLEALATRSDDTPHLRLTTVVVANKFVNDQTASHRMMKEIGNRMEKFAR 320

Query: 240 LMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTV--KIEERNAVISMLKS 299
           LMGVPF+FN I ++  LS+ +   L V+ DE +AINC GA+  +  +   R+AVIS  + 
Sbjct: 321 LMGVPFKFNIIHHVGDLSEFDLNELDVKPDEVLAINCVGAMHGIASRGSPRDAVISSFRR 380

Query: 300 LKPRVLTIVEEEADFISSK-----NKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLE 359
           L+PR++T+VEEEAD +  +     ++FL  F ECLR++ + F+  EE F  TSNE+L LE
Sbjct: 381 LRPRIVTVVEEEADLVGEEEGGFDDEFLRGFGECLRWFRVCFESWEESFPRTSNERLMLE 440

Query: 360 RECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALL 419
           R   R IV L+ C      E   ++ERRE  ++WS+R+   GF +  +SD+V DDV+ALL
Sbjct: 441 RAAGRAIVDLVAC------EPSDSTERRETARKWSRRMRNSGFGAVGYSDEVADDVRALL 500

Query: 420 KRYKPG-WSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP 453
           +RYK G WS++                 D+ GI+L W+++PVVW SAW+P
Sbjct: 501 RRYKEGVWSMVQC--------------PDAAGIFLCWRDQPVVWASAWRP 530

[Close]

BLAST of CmaCh08G001890 vs. TAIR 10
Match: AT3G49950.1 (GRAS family transcription factor )

HSP 1 Score: 172.9 bits (437), Expect = 5.7e-43
Identity = 123/408 (30.15%), Postives = 199/408 (48.77%), Query Frame = 0


Query: 65  LLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGLTCYKT 124
           LL  CA AI   D+   H +LW+LN +A P GDS Q+L   FL+AL  +      T   T
Sbjct: 30  LLLHCATAIDSNDAALTHQILWVLNNIAPPDGDSTQRLTSAFLRALLSRAVSKTPTLSST 89

Query: 125 LITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCT 184
           +  + + +     ++  +  F +++PW  FG +A+N AIL A+E  + +HI+D+S T C 
Sbjct: 90  ISFLPQADELHRFSVVELAAFVDLTPWHRFGFIAANAAILTAVEGYSTVHIVDLSLTHCM 149

Query: 185 QWPTLLESLATR-NDDTPHLKLTVVSTTTK----VKSLMKEIGQRMEKFARLMGVPFEFN 244
           Q PTL++++A+R N   P LKLTVVS++      +    +E+G ++  FA    +  EF 
Sbjct: 150 QIPTLIDAMASRLNKPPPLLKLTVVSSSDHFPPFINISYEELGSKLVNFATTRNITMEFT 209

Query: 245 --PITNLNQLSDLENEALKV---EEDEAIAINCNGALRTVKIEE--------RNAVISML 304
             P T  +  S L  + L++     +EA+ +NC+  LR +  E         R   +  L
Sbjct: 210 IVPSTYSDGFSSLLQQ-LRIYPSSFNEALVVNCHMMLRYIPEEPLTSSSSSLRTVFLKQL 269

Query: 305 KSLKPRVLTIVEEEADFISSK--NKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLER 364
           +SL PR++T++EE+ D  S    N+  S F+    ++ + F   +      S ++   E 
Sbjct: 270 RSLNPRIVTLIEEDVDLTSENLVNRLKSAFN----YFWIPFDTTDTFM---SEQRRWYEA 329

Query: 365 ECSRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALLK 424
           E S  I  ++       +ER  T  R      W +R+ E  F   R  +D + DVKA+L+
Sbjct: 330 EISWKIENVVAKEGAERVERTETKRR------WIERMREAEFGGVRVKEDAVADVKAMLE 389

Query: 425 RYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWISAWKP 453
            +  GW +              +  DD   + LTWK   VV+ + W P
Sbjct: 390 EHAVGWGM--------------KKEDDDESLVLTWKGHSVVFATVWVP 409

[Close]

BLAST of CmaCh08G001890 vs. TAIR 10
Match: AT2G04890.1 (SCARECROW-like 21 )

HSP 1 Score: 165.6 bits (418), Expect = 9.1e-41
Identity = 112/394 (28.43%), Postives = 201/394 (51.02%), Query Frame = 0


Query: 65  LLNECARAISDKDSNKIHHLLWMLNELASPYGDSDQKLAYYFLQALFCKVTETGLTCYKT 124
           +L  CA+A+S+ +       +  L  + S  G+  Q+L  Y L+ L  ++  +G + YK+
Sbjct: 53  VLVACAKAVSENNLLMARWCMGELRGMVSISGEPIQRLGAYMLEGLVARLAASGSSIYKS 112

Query: 125 LITVAEKNYSFDSALKLILKFQEVSPWMTFGHVASNGAILEALERETKLHIIDISDTLCT 184
           L +   ++Y F   L  +    EV P+  FG++++NGAI EA++ E ++HIID      +
Sbjct: 113 LQSREPESYEF---LSYVYVLHEVCPYFKFGYMSANGAIAEAMKDEERIHIIDFQIGQGS 172

Query: 185 QWPTLLESLATRNDDTPHLKLTVVSTTTKVKSLMKEIGQRMEKFARLMGVPFEFNPITNL 244
           QW  L+++ A R    P++++T V       S++  + +R+EK A+   VPF FN ++  
Sbjct: 173 QWIALIQAFAARPGGAPNIRITGVGD----GSVLVTVKKRLEKLAKKFDVPFRFNAVSRP 232

Query: 245 NQLSDLENEALKVEEDEAIAINCNGAL-----RTVKIE-ERNAVISMLKSLKPRVLTIVE 304
           +   ++E E L V + EA+ +N    L      +V +E  R+ ++ M+KSL P+V+T+VE
Sbjct: 233 S--CEVEVENLDVRDGEALGVNFAYMLHHLPDESVSMENHRDRLLRMVKSLSPKVVTLVE 292

Query: 305 EEADFISSKNKFLSYFDECLRFYTLYFKMLEECFEATSNEKLGLEREC-SRNIVRLLGCG 364
           +E +  ++ + FL  F E L +YT  F+ ++        E++ +E+ C +R++V ++ C 
Sbjct: 293 QECN--TNTSPFLPRFLETLSYYTAMFESIDVMLPRNHKERINIEQHCMARDVVNIIACE 352

Query: 365 NESELERELTSERREKGKQWSKRLEERGFSSARFSDDVMDDVKALLKRYKPGWSLMHWTG 424
               +      ER E   +W  R    GF     S  +   ++ALL+ Y  G+++     
Sbjct: 353 GAERI------ERHELLGKWKSRFSMAGFEPYPLSSIISATIRALLRDYSNGYAI----- 412

Query: 425 ATDTNRDEEEGGDDSNGIYLTWKEEPVVWISAWK 452
                  EE  G     +YL W +  +V   AWK
Sbjct: 413 -------EERDG----ALYLGWMDRILVSSCAWK 413

[Close]

BLAST of CmaCh08G001890 vs. TAIR 10
Match: AT5G48150.1 (GRAS family transcription factor )

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-40
Identity = 117/424 (27.59%), Postives = 203/424 (47.88%), Query Frame = 0


Query: 49  SLDHSLPATVGKWASTL-----------LNECARAISDKDSNKIHHLLWMLNELASPYGD 108
           S D +    +  W STL           L  CA+A+S+ D    H ++  L ++ S  G+
Sbjct: 95  SFDSTASQEINGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGE 154

Query: 109 SDQKLAYYFLQALFCKVTETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHV 168
             Q+L  Y L+ L  ++  +G + YK L    E   +    L  +    EV P+  FG++
Sbjct: 155 PIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEP--ASTELLSYMHILYEVCPYFKFGYM 214

Query: 169 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL 228
           ++NGAI EA++ E ++HIID      +QW TL+++ A R    P +++T +   T   + 
Sbjct: 215 SANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYAR 274

Query: 229 ---MKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTV 288
              +  +G R+ K A+   VPFEFN ++    +S+++ + L V   EA+A+N    L  +
Sbjct: 275 GGGLSIVGNRLAKLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHM 334

Query: 289 KIE------ERNAVISMLKSLKPRVLTIVEEEADFISSKNKFLSYFDECLRFYTLYFKML 348
             E       R+ ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   F+ +
Sbjct: 335 PDESVSTENHRDRLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESI 394

Query: 349 EECFEATSNEKLGLEREC-SRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFS 408
           +        +++ +E+ C +R++V ++ C     +      ER E   +W  R    GF+
Sbjct: 395 DVTLPRDHKQRINVEQHCLARDVVNIIACEGADRV------ERHELLGKWRSRFGMAGFT 454

Query: 409 SARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWI 452
               S  V   +K+LL+ Y            +D  R EE  G     +YL W    +V  
Sbjct: 455 PYPLSPLVNSTIKSLLRNY------------SDKYRLEERDG----ALYLGWMHRDLVAS 490

[Close]

BLAST of CmaCh08G001890 vs. TAIR 10
Match: AT5G48150.2 (GRAS family transcription factor )

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-40
Identity = 117/424 (27.59%), Postives = 203/424 (47.88%), Query Frame = 0


Query: 49  SLDHSLPATVGKWASTL-----------LNECARAISDKDSNKIHHLLWMLNELASPYGD 108
           S D +    +  W STL           L  CA+A+S+ D    H ++  L ++ S  G+
Sbjct: 95  SFDSTASQEINGWRSTLEAISRRDLRADLVSCAKAMSENDLMMAHSMMEKLRQMVSVSGE 154

Query: 109 SDQKLAYYFLQALFCKVTETGLTCYKTLITVAEKNYSFDSALKLILKFQEVSPWMTFGHV 168
             Q+L  Y L+ L  ++  +G + YK L    E   +    L  +    EV P+  FG++
Sbjct: 155 PIQRLGAYLLEGLVAQLASSGSSIYKALNRCPEP--ASTELLSYMHILYEVCPYFKFGYM 214

Query: 169 ASNGAILEALERETKLHIIDISDTLCTQWPTLLESLATRNDDTPHLKLTVVSTTTKVKSL 228
           ++NGAI EA++ E ++HIID      +QW TL+++ A R    P +++T +   T   + 
Sbjct: 215 SANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYAR 274

Query: 229 ---MKEIGQRMEKFARLMGVPFEFNPITNLNQLSDLENEALKVEEDEAIAINCNGALRTV 288
              +  +G R+ K A+   VPFEFN ++    +S+++ + L V   EA+A+N    L  +
Sbjct: 275 GGGLSIVGNRLAKLAKQFNVPFEFNSVS--VSVSEVKPKNLGVRPGEALAVNFAFVLHHM 334

Query: 289 KIE------ERNAVISMLKSLKPRVLTIVEEEADFISSKNKFLSYFDECLRFYTLYFKML 348
             E       R+ ++ M+KSL P+V+T+VE+E++  ++   F   F E + +Y   F+ +
Sbjct: 335 PDESVSTENHRDRLLRMVKSLSPKVVTLVEQESN--TNTAAFFPRFMETMNYYAAMFESI 394

Query: 349 EECFEATSNEKLGLEREC-SRNIVRLLGCGNESELERELTSERREKGKQWSKRLEERGFS 408
           +        +++ +E+ C +R++V ++ C     +      ER E   +W  R    GF+
Sbjct: 395 DVTLPRDHKQRINVEQHCLARDVVNIIACEGADRV------ERHELLGKWRSRFGMAGFT 454

Query: 409 SARFSDDVMDDVKALLKRYKPGWSLMHWTGATDTNRDEEEGGDDSNGIYLTWKEEPVVWI 452
               S  V   +K+LL+ Y            +D  R EE  G     +YL W    +V  
Sbjct: 455 PYPLSPLVNSTIKSLLRNY------------SDKYRLEERDG----ALYLGWMHRDLVAS 490

The following BLAST results are available for this feature:

BLAST of CmaCh08G001890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZF7	6.9e-110	51.22	Protein SHORT-ROOT OS=Arabidopsis thaliana OX=3702 GN=SHR PE=1 SV=1	[more]
A2XIA8	1.9e-104	48.05	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. indica OX=39946 GN=SHR2 PE=3 SV=1	[more]
Q75I13	2.5e-104	48.05	Protein SHORT-ROOT 2 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR2 PE=1 SV=1	[more]
A2YN56	1.7e-100	46.99	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. indica OX=39946 GN=SHR1 PE=3 SV=1	[more]
Q8H2X8	2.2e-100	46.99	Protein SHORT-ROOT 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SHR1 PE=1 SV=2	[more]

BLAST of CmaCh08G001890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G37650.1	4.9e-111	51.22	GRAS family transcription factor	[more]
AT3G49950.1	5.7e-43	30.15	GRAS family transcription factor	[more]
AT2G04890.1	9.1e-41	28.43	SCARECROW-like 21	[more]
AT5G48150.1	3.5e-40	27.59	GRAS family transcription factor	[more]
AT5G48150.2	3.5e-40	27.59	GRAS family transcription factor	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005202	Transcription factor GRAS	PFAM	PF03514	GRAS	coord: 64..451 e-value: 4.3E-94 score: 315.5
IPR005202	Transcription factor GRAS	PANTHER	PTHR31636	OSJNBA0084A10.13 PROTEIN-RELATED	coord: 40..451
IPR005202	Transcription factor GRAS	PROSITE	PS50985	GRAS	coord: 53..451 score: 66.037262
None	No IPR available	PANTHER	PTHR31636:SF194	PROTEIN SHORT-ROOT-LIKE	coord: 40..451

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001890.1	CmaCh08G001890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding