CmaCh08G001720 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G001720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionMADS-box protein 5
LocationCma_Chr08: 956593 .. 960816 (+)
RNA-Seq ExpressionCmaCh08G001720
SyntenyCmaCh08G001720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAATGGTGTAGGTTCATAGTTAGTGAGAAGGGAGAGGGTATGAGGAGGGGATTGGTGAAATAAGCGAAGAATATAAATGGTGACGCACAAAGGTTAAGAGGGGGAAAGAGAGAAGTGAAACAAAAAGAGCAAAGAAATTTGATATTTGATTTAGTTTTTGGCATTTCCTTTTCCGTTTGATTTTCGTTTTGATTTTCCGGGAAAATTTGGGATCAAATCTGTTTGGTTAGAGAGAAAAAGGAAAAGAAGAACAAAATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCAAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGGTATCATCATCATCAACAACAACAACAACTGTTGTATTGAACACTAATTTTTTTTTTTTAATTTTAATCCCGTTTTTGCCATTCTTTCTTTTTAGGTTTTCTGTTTCTTCCCTTTCTTTTTTCCCCTTTCCATGCTAAGAATAAAAGAAAAAGAGAGAATAATTTTTTAAAAAAATTACACATATATATATATACACATAAACGAATGAATCCTTTCCTTTTCGCTTCTCTGTGTTCATTTCATCCATGGCGTCTCAGAAATTAGGGTTTTCTTCTTCTTCTTCTTCTTCTTCCTCCACCATGCCGCCATGGATCGATCCATCGACTTAGGGTTTCTTCTTCTTCTCCTCATTTAGGGTTTCCTTACTGTTTTCTTCATGGATCTTTGTTTCTTTTACCGATTAAGAGTTGTAGTTTGTGTTTCTTAAGGGTTTTGATCCAAAATGAGATTTGATTTCCTGAGGATTTGTGTTTGTTTTCATGTAAACTTGAAACTAGTAATGGATTTTTTTAATTTGTTGTAGTAACGAACATTTCTTTTGTTGTTACTATTTTGTGTTTGATTATTACTATAATAATTTCAGTCTTCAGGCTTCTTCAAAAATTTAAGAAATAGGTTAATTATTGTGTACTTCAAGGTCAATAATTCATGTATTTGTTAATTACAGGAATTTGACATTTAATGATTTTCAAGATCTCTCAAATGTTATTGGTTTTCCTTANCTCCCAGGAAAAAAATTACAGCAAACCGATCACTCCACACGTACTTTCGCAATTAATGGGTGATGGTTGTAAGCACAAGGTCATGGTGGACGTCTTGGTGTAACGTACTTGCTCCGGTATGAAATAAGCATTTGAGATAAGCATTCTTTCGCTGCCACATCATTGGGTGGGGTTTTTTTTTTTTTTTTTTTTGGTATTATTATGTGTGAAATCTAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACAAGAGAAGCCTTGGTAATCACTTTTCTATTTTTTATTTTTTAAATTAAGTAGGTTAATTAATTAGTTAATTAATTAATCCTTTTTTTTTTTTTAAATAAAAGATGTTATTATTATTATTTGATGATATAAAATGATAGGATGGGTTAATTATAGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGTAATAACCCCAACATTTTAGATACCTTTACTTTCCATTTTTGTAGAACATTGATTTCCTGATCTTAAAGTTTTAGGTTCAAGGGTAATTTAGGACGTATCAGACTAAAATGTTCCATGTTAGTGTCGTATTCTCTTCGATTAATATCGTTTTGTCATTTTTTAGGGGTAGGGGTAGGGGTATTCATATGATCTGATAACCCGACCAACCCAGAGTCACTCATCCCAAACCATAAACGTTGGGTTGGGTTGAGTTAAGGTAGATTTTTTTTTCAAATTGGGTTCGGTTGAATTTTTTGGAAAACAAAAAAATGCGGGTTGATTTACTTGTTAACATTTTTTTTGTCGGGTCAACATGACCAAATCGAAAATAGGGTTACGATCTAGCCTAACCCAACCTTATTCTACTTTTTAGATTATTATGAAAATTAAAGATATTTGACGTTTCTAACTGATGTTAGTGTTGCGTTGTGACTTGTGACTGTTTGATATTTGAGTTTTATGAGATTTTAGTTATTAATGTAGCATGGGATAAGTAGACTTTTTAAAAATAATTACAAATAAACATCCGACAATCGAATCCAACCTAATCTGAAAATAGAGGATTAGGATTAGGTTGGGTTGAGTTGAATTGTGAATTTTATTTGAGTGGTTTGGGTCACTGATCTAACAAGCTCAAAATTTTGAGTTAGTTCAAAAGATCTTTCCAACTCAACCTAACTCGTGTAAACCTCTAATTGAAAGTTCTACAATCGTTCAAACTCACAACGACAAGGGAAAGGAAGTTTAAAGTAATGATATGAGATTATATGTACAATAACTTATCGATTTACATTAAAGTTTAAATAAACACATAATGAGATTAATCGAGTCGTGTTTAGTTGGTTCGGAGACGCTCGGTTATTTAGTAATTATGTTTTCTTTTTATGTGATAATTTAAATATAAGCAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGGTAGTTCTTCAACTTCTCCATTGCCTTTAATAAAACCATCCAAAATTATAATCTTTCTCATTCAATCCTTTTCTAATCTTTTGCAGACTCAGTACATGCTAGATCAGCTCACTGATCTTCAACGTAAGGTATGAGGACATGAACACATATACGACACGACACGAACACTATAGTTACATGGTTATAAAAATGAGTTTGATAGGTTTCGATCTAAAAAGTTACGAGCATTCAGTCTTGTTTTTGTTTGAACAAACTTTCAGGAACATCTTCTTAACGAAGCAAACAAGACACTGAAACAAAGGGTATAAAAACATATCTGTTGATAATATTATTTTAAAATATATATATATATATATATATATATATATATTAGAAAATTTTGTAATTGGTGTAAATTTGTGGATTACAGTTGATTGAAGGGTATCAAGTAAATGCACTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCTCCTAGCGATGCCTTCTTTCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTAAATATTCTTCTATTCTTCCCAAAATCTTTTATTCTTACGTTTTTTTAACGTCTTGGCGCTATTTGGGCACATTCGGCCCATAGTTTTCTTGAGTTTGAATTTGTATAGTAGGTACCGAGTCTAGATTTATTGAATTGGTAGGGTTTGTGTACTGTAAACTAGCTCAAAGTTAGCTGAAAATTTCAACTTTTGATCTCTGGATCGAAAATACATAGTTTATGCTAATTGAGCTACGTTCATCTCGTGTATTACGATTAGCATGATTTACCATTAGCTATGTTGAAGATTTGAACTTTATACTATTGAGCTATATTGAAGATTTAACTTTTGACCTCTAGATTGAGAATATATATTTATACTAGTTGAACTATGCTAATGATTTAAACTTTTTGAGCTCTTGATCGAGAACACATAGTTTATGCTAGATGAGGTACGTTAATTTCGTGTATTACAATTAGCATGATTTATGCTAGTTCTAGTCCTATCTAGAATCATAACGCCCGATTCAAACTAGGTCGGGGTGAGAATTTTGTAGGATTAATGTGAAATAGAAGAACAAATTTATAAGAAGCTAAAGATGATTAATTTGCAGGTATCAGCCAGATCCCATAACAGTGGTGACTGCTGGGCCGAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGAGAAACAACAAGGAGATGGAAATTTTTCCATTCAAAAATTGGAGAAAGAAAAGGGCAGTGTTTTTCTTTGCTTCTGTTGCTCACCTCTAAACCCCCTCCTCCCAAAAAAAGAAAAAAAAGAAAAAAAAAATCAATTTTCATGCTTGGAACTTATATATAATATATATATATATTTATATATATAATTAATACAAACTCTGCACTTAGTCTTTGTGAGCTAATTATGTGTATGCTATGACTTTGCTTTTTGAACAACAATTGTAATTTCCTTATTTTTCTTCTTTTTTCA

mRNA sequence

GGAAAATGGTGTAGGTTCATAGTTAGTGAGAAGGGAGAGGGTATGAGGAGGGGATTGGTGAAATAAGCGAAGAATATAAATGGTGACGCACAAAGGTTAAGAGGGGGAAAGAGAGAAGTGAAACAAAAAGAGCAAAGAAATTTGATATTTGATTTAGTTTTTGGCATTTCCTTTTCCGTTTGATTTTCGTTTTGATTTTCCGGGAAAATTTGGGATCAAATCTGTTTGGTTAGAGAGAAAAAGGAAAAGAAGAACAAAATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCAAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGACTCAGTACATGCTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAACGAAGCAAACAAGACACTGAAACAAAGGTTGATTGAAGGGTATCAAGTAAATGCACTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCTCCTAGCGATGCCTTCTTTCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTGACTGCTGGGCCGAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGAGAAACAACAAGGAGATGGAAATTTTTCCATTCAAAAATTGGAGAAAGAAAAGGGCAGTGTTTTTCTTTGCTTCTGTTGCTCACCTCTAAACCCCCTCCTCCCAAAAAAAGAAAAAAAAGAAAAAAAAAATCAATTTTCATGCTTGGAACTTATATATAATATATATATATATTTATATATATAATTAATACAAACTCTGCACTTAGTCTTTGTGAGCTAATTATGTGTATGCTATGACTTTGCTTTTTGAACAACAATTGTAATTTCCTTATTTTTCTTCTTTTTTCA

Coding sequence (CDS)

ATGGGAAGAGGAAGAGTAGAACTGAAGCGGATAGAGAACAAGATCAACCGGCAAGTGACCTTCGCAAAACGAAGAAATGGTCTGTTGAAGAAAGCTTATGAGCTCTCCGTGCTTTGCGATGCCGAGGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACTCTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTATCCACAAGAGAAGCCTTGGAACTGAGCAGCCAGCAGGAATATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAGAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCTCTTGAAAGGCAGCTTGATATGTCACTCAAGCAGATCAGATCAACAAGGACTCAGTACATGCTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAACGAAGCAAACAAGACACTGAAACAAAGGTTGATTGAAGGGTATCAAGTAAATGCACTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCAGCCTCCTAGCGATGCCTTCTTTCATCCTCTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATCCCATAACAGTGGTGACTGCTGGGCCGAGCATGAATAATTTCCTCCCAGGATGGTTGCCTTGA

Protein sequence

MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQVNALQLNQSADDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGWLP
Homology
[Close]
BLAST of CmaCh08G001720 vs. ExPASy Swiss-Prot
Match: Q8LLR0 (Agamous-like MADS-box protein MADS4 OS=Vitis vinifera OX=29760 GN=MADS4 PE=2 SV=2)

HSP 1 Score: 433.0 bits (1112), Expect = 2.3e-120
Identity = 220/242 (90.91%), Postives = 230/242 (95.04%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPE NVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPETNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQVN 180
           LS+KELESLERQLD+SLKQIRSTRTQYMLDQLTDLQRKEH+LNEANKTLKQRL+EG QVN
Sbjct: 121 LSTKELESLERQLDVSLKQIRSTRTQYMLDQLTDLQRKEHMLNEANKTLKQRLLEGTQVN 180

Query: 181 ALQLNQSADDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGW 240
            LQ N +A D+ YGRQQAQP  D FFHPL+CEPTLQIGYQPDPITV  AGPS+NN++PGW
Sbjct: 181 QLQWNPNAQDVGYGRQQAQPQGDGFFHPLECEPTLQIGYQPDPITVAAAGPSVNNYMPGW 240

Query: 241 LP 243
           LP
Sbjct: 241 LP 242

[Close]
BLAST of CmaCh08G001720 vs. ExPASy Swiss-Prot
Match: Q03489 (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE=1 SV=2)

HSP 1 Score: 401.7 bits (1031), Expect = 5.7e-111
Identity = 209/242 (86.36%), Postives = 221/242 (91.32%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           SSMLKTLERYQKCNYGAPE N+STREALE+SSQQEYLKLKARYEALQRSQRNLLGEDLGP
Sbjct: 61  SSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQVN 180
           L+SKELESLERQLDMSLKQIRSTRTQ MLDQL DLQRKEH LNEAN+TLKQRL+EG  +N
Sbjct: 121 LNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQRLMEGSTLN 180

Query: 181 ALQLNQSADDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNFLPGW 240
            LQ  Q+A D+ YGRQ  Q   D FFHPL+CEPTLQIGYQ DPITV  AGPS+NN++ GW
Sbjct: 181 -LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQNDPITVGGAGPSVNNYMAGW 240

Query: 241 LP 243
           LP
Sbjct: 241 LP 241

[Close]
BLAST of CmaCh08G001720 vs. ExPASy Swiss-Prot
Match: O65874 (MADS-box transcription factor 1 OS=Pisum sativum OX=3888 GN=MTF1 PE=2 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 2.2e-102
Identity = 200/248 (80.65%), Postives = 222/248 (89.52%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKR+ENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREA--LELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSMLKTLERYQKCNYGAPE NV+++EA  LELSSQQEYLKLKARYE+LQRSQRNL+GEDL
Sbjct: 61  SSMLKTLERYQKCNYGAPEGNVTSKEALVLELSSQQEYLKLKARYESLQRSQRNLMGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQ 180
           GPLSSK+LE+LERQLD SLKQIRSTRTQ+MLDQL DLQRKEHLL EAN+ L+QR+ EGYQ
Sbjct: 121 GPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQRM-EGYQ 180

Query: 181 VNALQLNQSADDMMYGR-QQAQPPSDAFF--HPLDCEPTLQIGY-QPDPITVVTAGPSMN 240
           +N+LQLN SA+DM YGR  Q     D  F   P++CEPTLQIGY Q DP +VVTAGPSMN
Sbjct: 181 INSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMN 240

Query: 241 NFLPGWLP 243
           N++ GWLP
Sbjct: 241 NYMGGWLP 247

[Close]
BLAST of CmaCh08G001720 vs. ExPASy Swiss-Prot
Match: O22456 (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana OX=3702 GN=SEP3 PE=1 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 5.7e-95
Identity = 191/247 (77.33%), Postives = 211/247 (85.43%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSML+TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQ 180
           GPLS+KELESLERQLD SLKQIR+ RTQ+MLDQL DLQ KE +L E NKTL+ RL +GYQ
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180

Query: 181 VNALQLNQSADDM-MYGR--QQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNN 240
           +  LQLN + +++  YGR   Q Q  S AFF PL+CEP LQIGYQ      + AGPS+NN
Sbjct: 181 M-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ-DGMGAGPSVNN 240

Query: 241 FLPGWLP 243
           ++ GWLP
Sbjct: 241 YMLGWLP 245

[Close]
BLAST of CmaCh08G001720 vs. ExPASy Swiss-Prot
Match: O04067 (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 1.7e-94
Identity = 189/249 (75.90%), Postives = 209/249 (83.94%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSM++TLERYQKCNYG PEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGEDL
Sbjct: 61  SSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQ 180
           GPLS+KELE LERQLD SLKQIR+ RTQ+MLDQL DLQ KE +LNE NKTL+ RL +GYQ
Sbjct: 121 GPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTLRLRLADGYQ 180

Query: 181 VNALQLNQSADD--MMYGR---QQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSM 240
           +  LQLN + +D  + YGR   QQ Q    AFF PL+CEP LQ+GYQ      + AGPS 
Sbjct: 181 M-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHGMEAGPSE 240

Query: 241 NNFLPGWLP 243
           NN++ GWLP
Sbjct: 241 NNYMLGWLP 248

[Close]
BLAST of CmaCh08G001720 vs. TAIR 10
Match: AT1G24260.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 349.0 bits (894), Expect = 3.1e-96
Identity = 191/246 (77.64%), Postives = 211/246 (85.77%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL-ELSSQQEYLKLKARYEALQRSQRNLLGEDLG 120
           SSML+TLERYQKCNYGAPEPNV +REAL ELSSQQEYLKLK RY+ALQR+QRNLLGEDLG
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAELSSQQEYLKLKERYDALQRTQRNLLGEDLG 120

Query: 121 PLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQV 180
           PLS+KELESLERQLD SLKQIR+ RTQ+MLDQL DLQ KE +L E NKTL+ RL +GYQ+
Sbjct: 121 PLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQM 180

Query: 181 NALQLNQSADDM-MYGR--QQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNNF 240
             LQLN + +++  YGR   Q Q  S AFF PL+CEP LQIGYQ      + AGPS+NN+
Sbjct: 181 -PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ-DGMGAGPSVNNY 240

Query: 241 LPGWLP 243
           + GWLP
Sbjct: 241 MLGWLP 244

[Close]
BLAST of CmaCh08G001720 vs. TAIR 10
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 348.6 bits (893), Expect = 4.1e-96
Identity = 191/247 (77.33%), Postives = 211/247 (85.43%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSML+TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQ 180
           GPLS+KELESLERQLD SLKQIR+ RTQ+MLDQL DLQ KE +L E NKTL+ RL +GYQ
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLADGYQ 180

Query: 181 VNALQLNQSADDM-MYGR--QQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNN 240
           +  LQLN + +++  YGR   Q Q  S AFF PL+CEP LQIGYQ      + AGPS+NN
Sbjct: 181 M-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ-DGMGAGPSVNN 240

Query: 241 FLPGWLP 243
           ++ GWLP
Sbjct: 241 YMLGWLP 245

[Close]
BLAST of CmaCh08G001720 vs. TAIR 10
Match: AT1G24260.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 324.3 bits (830), Expect = 8.2e-89
Identity = 183/247 (74.09%), Postives = 201/247 (81.38%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREAL--ELSSQQEYLKLKARYEALQRSQRNLLGEDL 120
           SSML+TLERYQKCNYGAPEPNV +REAL  ELSSQQEYLKLK RY+ALQR+QRNLLGEDL
Sbjct: 61  SSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDL 120

Query: 121 GPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQ 180
           GPLS+KELESLERQLD SLKQIR+ RTQ+MLDQL DLQ K              L +GYQ
Sbjct: 121 GPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSK--------------LADGYQ 180

Query: 181 VNALQLNQSADDM-MYGR--QQAQPPSDAFFHPLDCEPTLQIGYQPDPITVVTAGPSMNN 240
           +  LQLN + +++  YGR   Q Q  S AFF PL+CEP LQIGYQ      + AGPS+NN
Sbjct: 181 M-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ-DGMGAGPSVNN 231

Query: 241 FLPGWLP 243
           ++ GWLP
Sbjct: 241 YMLGWLP 231

[Close]
BLAST of CmaCh08G001720 vs. TAIR 10
Match: AT5G15800.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 283.5 bits (724), Expect = 1.6e-76
Identity = 159/253 (62.85%), Postives = 186/253 (73.52%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           S+MLKTL+RYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGEDLGP
Sbjct: 61  SNMLKTLDRYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLIEGYQVN 180
           L+SKELE LERQLD SLKQ+RS +TQYMLDQL+DLQ KE +L E N+ L  +L +   V 
Sbjct: 121 LNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRALAMKLDDMIGVR 180

Query: 181 ALQLNQSA------DDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQ----PDPITVVTAG 240
           +  +           ++ Y   QAQ  S   + PL+C PTLQ+GY      + IT  T  
Sbjct: 181 SHHMGGGGGWEGGEQNVTYAHHQAQ--SQGLYQPLECNPTLQMGYDNPVCSEQITATTQA 240

Query: 241 PSM--NNFLPGWL 242
            +   N ++PGW+
Sbjct: 241 QAQQGNGYIPGWM 250

[Close]
BLAST of CmaCh08G001720 vs. TAIR 10
Match: AT3G02310.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 282.0 bits (720), Expect = 4.7e-76
Identity = 156/252 (61.90%), Postives = 186/252 (73.81%), Query Frame = 0 

Query: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60
           MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEV+LI+FSNRGKLYEFCS+
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCST 60

Query: 61  SSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGP 120
           S+MLKTLERYQKC+YG+ E N    + LE +S +EYLKLK RYE LQR QRNLLGEDLGP
Sbjct: 61  SNMLKTLERYQKCSYGSIEVNNKPAKELE-NSYREYLKLKGRYENLQRQQRNLLGEDLGP 120

Query: 121 LSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRL-----IE 180
           L+SKELE LERQLD SLKQ+R  +TQYMLDQL+DLQ KEH+L +AN+ L  +L     + 
Sbjct: 121 LNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALSMKLEDMIGVR 180

Query: 181 GYQVNALQLNQSADDMMYGRQQAQPPSDAFFHPLDCEPTLQIGYQ----PDPITVVTAGP 240
            + +          ++ YG  QA   S   +  L+C+PTLQIGY      + + V   G 
Sbjct: 181 HHHIGGGWEGGDQQNIAYGHPQAH--SQGLYQSLECDPTLQIGYSHPVCSEQMAVTVQGQ 240

Query: 241 SM--NNFLPGWL 242
           S   N ++PGW+
Sbjct: 241 SQQGNGYIPGWM 249

The following BLAST results are available for this feature:
BLAST of CmaCh08G001720 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LLR02.3e-12090.91Agamous-like MADS-box protein MADS4 OS=Vitis vinifera OX=29760 GN=MADS4 PE=2 SV=... [more]
Q034895.7e-11186.36Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida OX=4102 GN=FBP2 PE... [more]
O658742.2e-10280.65MADS-box transcription factor 1 OS=Pisum sativum OX=3888 GN=MTF1 PE=2 SV=1[more]
O224565.7e-9577.33Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana OX=3702 GN=SEP3 PE=1 S... [more]
O040671.7e-9475.90Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba OX=3728 GN=AGL9 PE=2 ... [more]
BLAST of CmaCh08G001720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G24260.13.1e-9677.64K-box region and MADS-box transcription factor family protein [more]
AT1G24260.24.1e-9677.33K-box region and MADS-box transcription factor family protein [more]
AT1G24260.38.2e-8974.09K-box region and MADS-box transcription factor family protein [more]
AT5G15800.11.6e-7662.85K-box region and MADS-box transcription factor family protein [more]
AT3G02310.14.7e-7661.90K-box region and MADS-box transcription factor family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 152..172
NoneNo IPR availableCOILSCoilCoilcoord: 126..146
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 1..229
NoneNo IPR availablePANTHERPTHR48019:SF29AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOGcoord: 1..229
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 3..23
score: 68.71
coord: 23..38
score: 86.34
coord: 38..59
score: 67.51
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 1.3E-41
score: 154.2
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 2.9E-26
score: 90.8
IPR002100Transcription factor, MADS-boxPROSITEPS00350MADS_BOX_1coord: 3..57
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 33.515228
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 91..173
e-value: 3.5E-26
score: 91.2
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 89..185
score: 15.193914
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..80
e-value: 3.0E-28
score: 99.4
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 2..76
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..76
e-value: 8.3881E-47
score: 148.084

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G001720.1CmaCh08G001720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding