CmaCh08G001680 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G001680
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	rRNA-processing protein fcf2-like
Location	Cma_Chr08: 919605 .. 923438 (-)
RNA-Seq Expression	CmaCh08G001680
Synteny	CmaCh08G001680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAACCCTCTCTCTTTCACCGCGCCACTTCTTCTTTTTCGTCGCGCCGTCGCTTCTTCCGCGCCACTTCTTCTTCTTCCGCTCGTGCCATCGCAGCCCCCTTCATTGGAGTTCAGCACTGAGTTTCTACTTCCTTGTTGTGAATGGTATTCTCCCTATCACCATCTATGTCTTCATTATCGCTTGAAAAACATAAATTAGAAACTCTCATGAAAGAATTTAGGAGTTGTTTATCTGTCTGTTTGTTTGTTTTTGTTAATAAAAATTGCCGTATAAATACGAAAATAAGTTCAGCCTTATGGAAAATTGGGACGTGGTTTGTGCTTGGCTGTTCTGATTCGGACAGAATCAGTTATCCAATTCTCTTTTAAATCGTTGTTTATCGGTTGACCGAACAACTTCAACCTTATTCATGTTTGTGTATTTGTAGATTGTAGTTGTGAGAATACAATTGATTTTTTTTTTTTTTTTTTTTTTTTTTCCATTCTGAAAATTGAGATTGTTTCCCTCAATTAACCAATACGATATCCAATAATACTTAGGATTTATAGAATCAAGAGAATGAATCCAGACATATTTTTTTTATTGAAATACGAATCTATCATTGTATGAAGCTCAAACCTGATTAAAAACTTGAGTCCAGACATATTTTTCAATTATTCATTAGGAGTAATCAATTAAACGGTAATGAACCAACAGTGTTTTATTAATGTGGATTGACTTCTTCCTTGAAATTGACTTGTCAATTTCAGAAATTAAGACGAAAGGGTACACGATTTAGCTCAAACAAAATTCTCCCTTATTGTGCCTTTTATACTATGGATATAGATGTCAACAGAATTAATAGAATTATATTTTTTAGGACACCAGTTAATTAATTTTCTTAACTGGTACAGTTTTAAGTGATGTTTGAACTAAGGCTGATTGAAATTTTCTTATATTTTGTAGATGTCAGGAAAAAAGCCTGTCATTAGCCTTTCTTGGGAGCCAAAGCTGCCCACCTCGTCATCTGGGATCAAAACCAAGGCTTGTGACAAATCTCACAGTCAAGCGGAAAATGGTCTTGTTTGGAAAAACAATTCAGAGCTTGTGGATGGGCTATTTGTTCCCCCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTTAGTGACACGGCTGGGAGGAGTTGGTATATGCTCTTTTCATATGAAATTTCAATAGTTTCAGTTTTACCATTGATTCCTGGAGAATCAATGAAGGCACTTTTACTCCTTTCACATGGTTTTAATCTTATTTGAATGTTTTTTATTTTTATCTTTAACTTCATTGGTTGTGGTACCTTGCTAGACCCCATCAGTTTATTAACATAGTAGTTGAAGTTCTATATTCTAATACTCATACGCTTGTTATTGTAACTAGGTTTGACATGCCAGCACAAACCATGACCCCTGAAATGGAAAAAGATTTGCGCTTGTTGAAGGTGAGGATGTCTTTGATGTATTATCCATACTCTCATTAGTTTTGTATTCCACATAGTTTGGACTGTTATATAGAAACTGGTTACTTTCACCATGGAGCGAGAGTTGTAATCATGCTAAAGAGCTCTGCAGTTGTGATATGGGCATGGCGTGTGTGTTCTTATTCATCTCTGGTTCCAAGATTCAATATTCTTCTAGAACTAGAACACTGCAGATGGGCATGACTTGTGTGTTCTTATTCATCTTTGGTTCCAAGATTCAATATTCTTCTAGAACTAGGACAATCGATATATATGATTGCTATGATGCATGTAATGACTAATTAGAATGTCATGTTTCTACATATTTTATTTGTTGGGGTCATATAGAAAAATAATTATGCTTTGATGCACATGAAACATATATTCTAGTACTTATGGAATTATTTCAATCCCATAGTGGCCACCTATCTAGAATTTAATATCCTACGAATTATCTAGACAACCAAATATAGTAGGGTCAGGTGGTTGTCGTTTGAAAGTAGTCAAGTTGCCAAGTTTGCTTGGACACCCATGGATATCACCCAAAAAAAAAAAAAAAAAAACATTTTGATGCCACAATGAAACATATATTTTCAATTTGCAATTTACTAGTACTTGACCAAGTTGTTTCAAGTTCATAGGATTTTTCAAGGGCTGGATAGGTCAACGTGTGATGTTTTCTCTTGTTAGATTCTATGTTTCTCTTTGGGTTCTGGTGATGAAGCTGTTTTGTAATTATCCTTTAGATATTATTTTGCTTGATTGGAGGCCTTTCTTGTAGTTTGCCCCCTTTATGGGCTTTATTTTTTGTGTGCTCCTGTATTCATTCATTTTTTCTAACCGGAAGCTTAGTTTCTTTTTAGAAAAATACTATACTTTCTATACTAAGTTGTTGAAACCCGAAATTGGACGTCAGAGTGTGTTGGGCTAGTTTGAGTAGATAGATCGTTTTTTCACCATTGCATCTGTGGTCATGAATCTGTGAAAGAAAAGCATAGTTACGTAGATATTTAACTTATAGGATAATATTTACTAGTGTGGTTGATTTCAATGACCCATCTATCTCTATGTGTTTATTATCATCTAATATCTATGAACTCGGAAAATTTCTGTTTGATTGGCTTCTGCTGCGTCCTTATTTCTCTTGATGATTATAGCTGAGGAGCGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCGAAATCAAAAACACTTCCCAAATATTTCCAGGCAAGCTTTTAGTTTCACGAGAAATCAACTCATTTTATACACGAGCAAAAGTAAAATTTTCTTAGTAAACAATATGCCCAGTGTTAATATTTGCTCTAGACTTATTTTGAGTTTTAAGCATTTACCAGGTAGGAACTGTGGTCGAGTCTTCTTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAGAGGAAAGCAACGCTCGCTGACGAACTGCTTTCCGACCAGGCCCTCACTCAGTACAGGTTTGATCGTTATCACATTCTCTTGCTATAGCAAAATTTTCCAGTGAAGGAAAAGAAATGGGGGAATATATGGCTATCCATTTTGAAATCTACTTGTTATCTGTTTTATGATATGGTTGCTTCTTCGAATCACTTGGACGAGGAACATTTGTTTTTATGGACGTTGAGAAGTTAAAATTAGAGTTTTAAAATGTAAAGTGCATTCTTATGCAACATTGGTGGAGCATGTGCTTAATTTAAGAAGCTTTCCTATACAGTCTTGATCAGTTCTTCCATTCGTTCACTTCCAGATTTTGAAAATTGCTTCGTCTTTAAGTTGAATGTAATATTTCTTGTGCATTGTTCTAGTGTTTTGTTCTTCTTATATCCTTTTGAAAAACCTCTTGCAGAAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCAGGTGGAAACGACAAGTGGAAAATAAGGGGTCGTCAATCACAAAAACGGGCAAAGGAAAGGAGGAATTAGGTAAGTTGCCTCGAATTTTTCACTAGTAAACCAGATGAGCACCAGTAGATCAGATCAAGTTAAGTGATGGGGCTGTGTCCGAGTGTGATACAAAGTATACGGATTGATCATTGGCTTATTAGGTGAAATCCAGCAAATATTTTATGTATACTCTGTAGACTGAGCTGACTAAGAACTCAAGTTTAAACTATTTTTGGCTATTGAATTGATGATGTGTATTAGGAGTAGAAGTGTTCTTCAGGCTAAGTTATGAAACCTGTAACTGATGAAATGGTGTTTATTTATCACTGAAGAAAACAACGTATTCTTGTTCCACTGGTTTCATATGTCAAATTTAATGGCAACCCACATATGTCATATTCCTAGTCC

mRNA sequence

GGAAAACCCTCTCTCTTTCACCGCGCCACTTCTTCTTTTTCGTCGCGCCGTCGCTTCTTCCGCGCCACTTCTTCTTCTTCCGCTCGTGCCATCGCAGCCCCCTTCATTGGAGTTCAGCACTGAGTTTCTACTTCCTTGTTGTGAATGATGTCAGGAAAAAAGCCTGTCATTAGCCTTTCTTGGGAGCCAAAGCTGCCCACCTCGTCATCTGGGATCAAAACCAAGGCTTGTGACAAATCTCACAGTCAAGCGGAAAATGGTCTTGTTTGGAAAAACAATTCAGAGCTTGTGGATGGGCTATTTGTTCCCCCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTTAGTGACACGGCTGGGAGGAGTTGGTTTGACATGCCAGCACAAACCATGACCCCTGAAATGGAAAAAGATTTGCGCTTGTTGAAGCTGAGGAGCGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCGAAATCAAAAACACTTCCCAAATATTTCCAGGTAGGAACTGTGGTCGAGTCTTCTTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAGAGGAAAGCAACGCTCGCTGACGAACTGCTTTCCGACCAGGCCCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCAGGTGGAAACGACAAGTGGAAAATAAGGGGTCGTCAATCACAAAAACGGGCAAAGGAAAGGAGGAATTAGGTAAGTTGCCTCGAATTTTTCACTAGTAAACCAGATGAGCACCAGTAGATCAGATCAAGTTAAGTGATGGGGCTGTGTCCGAGTGTGATACAAAGTATACGGATTGATCATTGGCTTATTAGGTGAAATCCAGCAAATATTTTATGTATACTCTGTAGACTGAGCTGACTAAGAACTCAAGTTTAAACTATTTTTGGCTATTGAATTGATGATGTGTATTAGGAGTAGAAGTGTTCTTCAGGCTAAGTTATGAAACCTGTAACTGATGAAATGGTGTTTATTTATCACTGAAGAAAACAACGTATTCTTGTTCCACTGGTTTCATATGTCAAATTTAATGGCAACCCACATATGTCATATTCCTAGTCC

Coding sequence (CDS)

ATGATGTCAGGAAAAAAGCCTGTCATTAGCCTTTCTTGGGAGCCAAAGCTGCCCACCTCGTCATCTGGGATCAAAACCAAGGCTTGTGACAAATCTCACAGTCAAGCGGAAAATGGTCTTGTTTGGAAAAACAATTCAGAGCTTGTGGATGGGCTATTTGTTCCCCCAAACAACCCAAAAAAGTTGAATAAGTTATTGAGAAAGCAAGTTAGTGACACGGCTGGGAGGAGTTGGTTTGACATGCCAGCACAAACCATGACCCCTGAAATGGAAAAAGATTTGCGCTTGTTGAAGCTGAGGAGCGTCATTGATCCCAAGAGACACTACAAGAAGGGTGATTCGAAATCAAAAACACTTCCCAAATATTTCCAGGTAGGAACTGTGGTCGAGTCTTCTTTGGACTTCTTCTCGGGTAGATTAACAAAGAAGGAGAGGAAAGCAACGCTCGCTGACGAACTGCTTTCCGACCAGGCCCTCACTCAGTACAGAAAACGCAAAGTTCAAGAAATCGAAGAGCAGAATCGACCAGGTGGAAACGACAAGTGGAAAATAAGGGGTCGTCAATCACAAAAACGGGCAAAGGAAAGGAGGAATTAG

Protein sequence

MMSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRGRQSQKRAKERRN

Homology

[Close]

BLAST of CmaCh08G001680 vs. ExPASy Swiss-Prot
Match: O42877 (rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=fcf2 PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.3e-24
Identity = 59/132 (44.70%), Postives = 90/132 (68.18%), Query Frame = 0


Query: 67  RKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQVG 126
           +K + DTAG +WFDMPA  +T  +++D++LLK+R+ +DPKRHY++ ++KS  +PKYFQVG
Sbjct: 104 KKNIKDTAGSNWFDMPATELTESVKRDIQLLKMRNALDPKRHYRRENTKS--MPKYFQVG 163

Query: 127 TVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRG 186
           ++VE   DF+S R+  +ERK T+ DELL D     Y K+K  E++         K K+ G
Sbjct: 164 SIVEGPQDFYSSRIPTRERKETIVDELLHDSERRSYFKKKYLELQ---------KSKMSG 223

Query: 187 RQSQ-KRAKERR 198
           R+ Q K+ ++RR
Sbjct: 224 RKGQYKKLQQRR 224

[Close]

BLAST of CmaCh08G001680 vs. ExPASy Swiss-Prot
Match: Q5QJE6 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=9606 GN=DNTTIP2 PE=1 SV=2)

HSP 1 Score: 109.4 bits (272), Expect = 4.8e-23
Identity = 56/119 (47.06%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 54  VPPNNPKK--LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKK 113
           VPP +  K  L K  RK+   TAG  WF M A  MT E++ DL+ LK+R+ +DPKR YKK
Sbjct: 619 VPPYSESKYQLQKKRRKERQKTAGDGWFGMKAPEMTNELKNDLKALKMRASMDPKRFYKK 678

Query: 114 GDSKSKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEI 171
            D      PKYFQ+GT+V++  DF+  R+ KK+RK T+ +ELL+D    +Y +RK  EI
Sbjct: 679 NDRDG--FPKYFQIGTIVDNPADFYHSRIPKKQRKRTIVEELLADSEFRRYNRRKYSEI 735

[Close]

BLAST of CmaCh08G001680 vs. ExPASy Swiss-Prot
Match: Q8R2M2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10090 GN=Dnttip2 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.4e-22
Identity = 57/130 (43.85%), Postives = 78/130 (60.00%), Query Frame = 0


Query: 54  VPPNNPKK--LNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKK 113
           VPP +  K  L K  RK+   TAG  WF M A  +T E++ DLR LK+R+ +DPKR YKK
Sbjct: 621 VPPYSESKHRLQKQRRKERQKTAGNGWFGMKAPELTDELKNDLRALKMRAGMDPKRFYKK 680

Query: 114 GDSKSKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIE 173
            D      PKYFQVGT+V++  DF+  R+ KK+RK T+ +ELL+D    ++ +RK  EI 
Sbjct: 681 NDRDG--FPKYFQVGTIVDNPADFYHSRIPKKQRKKTIVEELLADSEFRRFNRRKYSEIM 740

Query: 174 EQNRPGGNDK 182
            +       K
Sbjct: 741 AEKAANAEGK 748

[Close]

BLAST of CmaCh08G001680 vs. ExPASy Swiss-Prot
Match: Q0P5H2 (Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913 GN=DNTTIP2 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-22
Identity = 54/119 (45.38%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 54  VPP--NNPKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKK 113
           VPP   +  KL K  R++   TAG  WF M A  +T E++ DL+ LK+R+ +DPKR YKK
Sbjct: 629 VPPYSESKYKLQKKRRQERQKTAGDGWFGMKAPELTDELKNDLKALKMRASMDPKRFYKK 688

Query: 114 GDSKSKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEI 171
            D      PKYFQ+GT+V++  DF+  R+ KK+RK T+ +ELL+D    +Y +RK  EI
Sbjct: 689 NDRDG--FPKYFQIGTIVDNPADFYHSRVPKKQRKRTIVEELLADSEFRRYNRRKYSEI 745

[Close]

BLAST of CmaCh08G001680 vs. ExPASy Swiss-Prot
Match: Q12035 (rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=FCF2 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.9e-16
Identity = 55/160 (34.38%), Postives = 85/160 (53.12%), Query Frame = 0


Query: 43  KNNSELVDGLFVPPNNPKKLNKL--------LRKQVSDTAGRSWFDMPA--QTMTPEMEK 102
           K   +L  G     N  KK N L         +   SD     WF +P     M  E+++
Sbjct: 60  KKLPKLETGFDALANKKKKKNVLPSVETEDKRKPNKSDKNDNDWFTLPKPDDNMRREVQR 119

Query: 103 DLRLLKLRSVIDPKRHYKKGDSKSKTLPKYFQVGTVVESSLDFFSGRLTKKERKATLADE 162
           DL L+K R+ +DPKRHYKK   +   +P+ F +GT++E   +F+S R+ +KERK+T+ + 
Sbjct: 120 DLLLIKHRAALDPKRHYKK---QRWEVPERFAIGTIIEDKSEFYSSRMNRKERKSTILET 179

Query: 163 LLSDQALTQYRKRKVQEIEEQNRPGGNDKWKIRGRQSQKR 193
           L+ D+A  +Y KRK  EI+E++  G    +K      +KR
Sbjct: 180 LMGDEASNKYFKRKYNEIQEKSTSGRKAHYKKMKEMRKKR 216

[Close]

BLAST of CmaCh08G001680 vs. TAIR 10
Match: AT5G30495.2 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-57
Identity = 115/200 (57.50%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 2   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQA---ENGLVWKNNSELVDGLFVPPNN 61
           M+  KP+I L+WEPKLP  S  + TK C  S  +    E+  +W + SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLPGLS--LDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 62  PKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKT 121
           PKK+NK++RKQ+ DT G +WFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+SK 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 122 LPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGG 181
             KYFQ+GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIEE++R   
Sbjct: 121 AEKYFQIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVT 180

Query: 182 NDKWKIRGRQSQKRAKERRN 199
           N KWK +G Q+  + K+RRN
Sbjct: 181 NKKWKKKGNQTTNK-KQRRN 196

[Close]

BLAST of CmaCh08G001680 vs. TAIR 10
Match: AT5G30495.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 219.2 bits (557), Expect = 3.0e-57
Identity = 115/200 (57.50%), Postives = 152/200 (76.00%), Query Frame = 0


Query: 2   MSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQA---ENGLVWKNNSELVDGLFVPPNN 61
           M+  KP+I L+WEPKLP  S  + TK C  S  +    E+  +W + SELVDGL +PPN+
Sbjct: 1   MAETKPLIGLTWEPKLPGLS--LDTKTCSTSSKRVESHESSSLWMSKSELVDGLCLPPND 60

Query: 62  PKKLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKT 121
           PKK+NK++RKQ+ DT G +WFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+SK 
Sbjct: 61  PKKINKMIRKQIKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPAVHYKKSVSRSKL 120

Query: 122 LPKYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGG 181
             KYFQ+GTV+E + +F+ GRLTKK RKATLADEL+SD  ++QYRKRKV+EIEE++R   
Sbjct: 121 AEKYFQIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKVSQYRKRKVKEIEEKSRAVT 180

Query: 182 NDKWKIRGRQSQKRAKERRN 199
           N KWK +G Q+  + K+RRN
Sbjct: 181 NKKWKKKGNQTTNK-KQRRN 196

[Close]

BLAST of CmaCh08G001680 vs. TAIR 10
Match: AT1G54770.1 (Fcf2 pre-rRNA processing protein )

HSP 1 Score: 204.5 bits (519), Expect = 7.7e-53
Identity = 110/198 (55.56%), Postives = 143/198 (72.22%), Query Frame = 0


Query: 1   MMSGKKPVISLSWEPKLPTSSSGIKTKACDKSHSQAENGLVWKNNSELVDGLFVPPNNPK 60
           M   K+P+I L WEPKLP  S  +KT +     +++       + SELVDGL +PPN+P+
Sbjct: 1   MAETKQPLIGLKWEPKLPGLSLDLKTGSTRSKTAES-------SKSELVDGLCLPPNDPR 60

Query: 61  KLNKLLRKQVSDTAGRSWFDMPAQTMTPEMEKDLRLLKLRSVIDPKRHYKKGDSKSKTLP 120
           K+NK++RKQ+ DT G +WFDMPA TMTPE+++DL+LLKLR+V+DP  HYKK  S+SK   
Sbjct: 61  KINKMIRKQLKDTTGSNWFDMPAPTMTPELKRDLQLLKLRTVMDPALHYKKSVSRSKLAE 120

Query: 121 KYFQVGTVVESSLDFFSGRLTKKERKATLADELLSDQALTQYRKRKVQEIEEQNRPGGND 180
           KYFQ+GTV+E + +F+ GRLTKK RKATLADEL+SD     YRKRKV+EIEE++R   N 
Sbjct: 121 KYFQIGTVIEPAEEFY-GRLTKKNRKATLADELVSDPKTALYRKRKVREIEEKSRAVTNK 180

Query: 181 KWKIRGRQSQKRAKERRN 199
           KW  +G QS K  K RRN
Sbjct: 181 KWNKKGNQS-KNTKPRRN 189

The following BLAST results are available for this feature:

BLAST of CmaCh08G001680 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O42877	3.3e-24	44.70	rRNA-processing protein fcf2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
Q5QJE6	4.8e-23	47.06	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Homo sapiens OX=96...	[more]
Q8R2M2	2.4e-22	43.85	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Mus musculus OX=10...	[more]
Q0P5H2	3.1e-22	45.38	Deoxynucleotidyltransferase terminal-interacting protein 2 OS=Bos taurus OX=9913...	[more]
Q12035	1.9e-16	34.38	rRNA-processing protein FCF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S...	[more]

BLAST of CmaCh08G001680 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G30495.2	3.0e-57	57.50	Fcf2 pre-rRNA processing protein	[more]
AT5G30495.1	3.0e-57	57.50	Fcf2 pre-rRNA processing protein	[more]
AT1G54770.1	7.7e-53	55.56	Fcf2 pre-rRNA processing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014810	Fcf2 pre-rRNA processing, C-terminal	PFAM	PF08698	Fcf2	coord: 72..166 e-value: 1.2E-37 score: 128.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..186
IPR039883	Fcf2/DNTTIP2	PANTHER	PTHR21686	UNCHARACTERIZED	coord: 6..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001680.1	CmaCh08G001680.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005730	nucleolus