CmaCh08G001260 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G001260
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Pentatricopeptide repeat-containing protein
Location	Cma_Chr08: 652380 .. 654419 (+)
RNA-Seq Expression	CmaCh08G001260
Synteny	CmaCh08G001260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCTCTATTGATCGTTCGAAGAATCCAGTTTTTTTCCCGCCATTATTCTTCAAGTCTGCACGTAGTTCCAATTTCTCCCCAACTCTCCAAACTGACAAAGAAATCATGCATCGAATATCTCCGGAACTGCAAATCCATGGATCAACTCAAACAAATTCAGAGTCAGATCTTTCGAATCGGTCTGGATCGGGACAGGGACACCACCAACAAATTGATGGCATTTTGTGCGGATCCATCTGTTGGAAACTTGCACTACACAGAGAGGATGTTCGATTACATACAAGGTCCATCTCTGTTTGTTTATAATGTGATGGTTAAAGCGTATGCCAAAAGGGGTATTTTCAGAAAAGTCCTTTTGCTATTTCAACGGTTGAGGGAAGATGAGTTGTGGCCTGATAATTTTACTTACCCGTTTGTTCTAAAAGCCATTGGTTGCTTAAGGGATGCGAGGAAAGGTGAAAAGGTTCATGGTTTTGTGGTGAAAACGGGAATGGTTTGTGACACTTATGTTTGTAATTCACTTATGGATATGTATGCAGAATTGGGCAAGGTTGGGAATGCCAAGAAGCTGTTCGACGAAATGCCGAGGAGAGATTCTGTTTCTTGGAATGTTTTGATTTCTGGGTATGTTAGGTGTAGGAGATTTGAGGATGCTGTTAATGTATTTAAGGAAATGCAGCAAGAAAGCAATGAGAAACCTGGTGAAGCTACTGTTGTTAGCACTCTTTCTGCCTGTACAGCTCTGAAAAATCTGGCGCTGGGGGTGGAAATTCACAACTATGTTAGAAAGGAGCTTGGTTTTACCACTATAATTAATAATGCATTGTTAGATATGTACGCAAAATGTGGGTGTTTAGATATTGCCCGCAAGATATTTGATGAAATGCCAATGAGAAATGTGATTTGTTGGACCAGCATGATTTCTAGCTATATTAACTGTGGTGATTTAACAGAGGCTAGAGACTTGTTTGATAGAAGTCCAGTTAGAGATGTTGTTCTGTGGACAGCAATGATTAATGGGTATGTGCAGTTCAACCATTTTGATGAGGCTGTGGCCTTGTTTCGCGAAATGCAATTTCAAAAGGTAAAGCCAGATAAGTTCACGGTAGTCGCTCTTCTTACGGGCTGTGCGCAGTTGGGAGCTCTAGAGCAAGGGAAATGGATTCATGGATATCTAGTTGAGAACAGAATAACAATGGATACTGTGGTTGGTACTGCACTCATTGAAATGTATTCCAAATGTGGATGTGTGGATAAATCTTTAGAAATTTTCTATCAGTTGGAGGAGAAGGACACGACATCGTGGACATCAATGATTTGCGGTCTTGCCATGAATGGGGAGACCGGTGAAGCGCTTAAGCTGTTCACAGAAATGGAACTCGAGGGAGCTAAACCTGATGATATCACCTTCATTGGTGTTCTAAGTGCCTGTAGTCATGGTGGATTGGTAGAGGAAGGACGTCGGTATTTCGACTCGATGAAAACGGTTTATCGAATTGAGCCAAAGGTAGAACACTATGGGTGTGCTATCGACCTCCTTGGTCGAGCGGGGCGGTTGGATGAAGCGGAGGAACTGATACGAGAGATTCCCAGTGAAAATGATGCAATTCTGATTCCTCTCTATGGTGCTTTGCTTAGTGCTTGCAGAATCCATAATAATGTTGACATGGGTGAAAGATTAGCCAAAAAACTAGTGAACATAGAATCATGTGATTCTAGCATTCACACACTTCTTGCGAATATATATGCTTTTGCCCACAGGTGGGAAGATGCAAAGGAAGTGAGAAGGAAAATGAAAGAGCTTGGAGTTAAGAAGATGCCTGGATGTAGTTCGATCGAGGTCGATGGCATCGTTCACGAGTTTCTTGTTGGGGATCCATCTCATCCAGAAATGATGGAAATATGCTCCATGTTGGATAGCGTGGTTGGACCATTACTGGGACCAAAGGAATCCGAGCTTGAAATTGTGATACCACTTCACATTGATGGCACTGTTGTGTTGCATCCATTACATGAGGCTGACAAAGTTTCTTGA

mRNA sequence

ATGCTTCCTCTATTGATCGTTCGAAGAATCCAGTTTTTTTCCCGCCATTATTCTTCAAGTCTGCACGTAGTTCCAATTTCTCCCCAACTCTCCAAACTGACAAAGAAATCATGCATCGAATATCTCCGGAACTGCAAATCCATGGATCAACTCAAACAAATTCAGAGTCAGATCTTTCGAATCGGTCTGGATCGGGACAGGGACACCACCAACAAATTGATGGCATTTTGTGCGGATCCATCTGTTGGAAACTTGCACTACACAGAGAGGATGTTCGATTACATACAAGGTCCATCTCTGTTTGTTTATAATGTGATGGTTAAAGCGTATGCCAAAAGGGGTATTTTCAGAAAAGTCCTTTTGCTATTTCAACGGTTGAGGGAAGATGAGTTGTGGCCTGATAATTTTACTTACCCGTTTGTTCTAAAAGCCATTGGTTGCTTAAGGGATGCGAGGAAAGGTGAAAAGGTTCATGGTTTTGTGGTGAAAACGGGAATGGTTTGTGACACTTATGTTTGTAATTCACTTATGGATATGTATGCAGAATTGGGCAAGGTTGGGAATGCCAAGAAGCTGTTCGACGAAATGCCGAGGAGAGATTCTGTTTCTTGGAATGTTTTGATTTCTGGGTATGTTAGGTGTAGGAGATTTGAGGATGCTGTTAATGTATTTAAGGAAATGCAGCAAGAAAGCAATGAGAAACCTGGTGAAGCTACTGTTGTTAGCACTCTTTCTGCCTGTACAGCTCTGAAAAATCTGGCGCTGGGGGTGGAAATTCACAACTATGTTAGAAAGGAGCTTGGTTTTACCACTATAATTAATAATGCATTGTTAGATATGTACGCAAAATGTGGGTGTTTAGATATTGCCCGCAAGATATTTGATGAAATGCCAATGAGAAATGTGATTTGTTGGACCAGCATGATTTCTAGCTATATTAACTGTGGTGATTTAACAGAGGCTAGAGACTTGTTTGATAGAAGTCCAGTTAGAGATGTTGTTCTGTGGACAGCAATGATTAATGGGTATGTGCAGTTCAACCATTTTGATGAGGCTGTGGCCTTGTTTCGCGAAATGCAATTTCAAAAGGTAAAGCCAGATAAGTTCACGGTAGTCGCTCTTCTTACGGGCTGTGCGCAGTTGGGAGCTCTAGAGCAAGGGAAATGGATTCATGGATATCTAGTTGAGAACAGAATAACAATGGATACTGTGGTTGGTACTGCACTCATTGAAATGTATTCCAAATGTGGATGTGTGGATAAATCTTTAGAAATTTTCTATCAGTTGGAGGAGAAGGACACGACATCGTGGACATCAATGATTTGCGGTCTTGCCATGAATGGGGAGACCGGTGAAGCGCTTAAGCTGTTCACAGAAATGGAACTCGAGGGAGCTAAACCTGATGATATCACCTTCATTGGTGTTCTAAGTGCCTGTAGTCATGGTGGATTGGTAGAGGAAGGACGTCGGTATTTCGACTCGATGAAAACGGTTTATCGAATTGAGCCAAAGGTAGAACACTATGGGTGTGCTATCGACCTCCTTGGTCGAGCGGGGCGGTTGGATGAAGCGGAGGAACTGATACGAGAGATTCCCAGTGAAAATGATGCAATTCTGATTCCTCTCTATGGTGCTTTGCTTAGTGCTTGCAGAATCCATAATAATGTTGACATGGGTGAAAGATTAGCCAAAAAACTAGTGAACATAGAATCATGTGATTCTAGCATTCACACACTTCTTGCGAATATATATGCTTTTGCCCACAGGTGGGAAGATGCAAAGGAAGTGAGAAGGAAAATGAAAGAGCTTGGAGTTAAGAAGATGCCTGGATGTAGTTCGATCGAGGTCGATGGCATCGTTCACGAGTTTCTTGTTGGGGATCCATCTCATCCAGAAATGATGGAAATATGCTCCATGTTGGATAGCGTGGTTGGACCATTACTGGGACCAAAGGAATCCGAGCTTGAAATTGTGATACCACTTCACATTGATGGCACTGTTGTGTTGCATCCATTACATGAGGCTGACAAAGTTTCTTGA

Coding sequence (CDS)

ATGCTTCCTCTATTGATCGTTCGAAGAATCCAGTTTTTTTCCCGCCATTATTCTTCAAGTCTGCACGTAGTTCCAATTTCTCCCCAACTCTCCAAACTGACAAAGAAATCATGCATCGAATATCTCCGGAACTGCAAATCCATGGATCAACTCAAACAAATTCAGAGTCAGATCTTTCGAATCGGTCTGGATCGGGACAGGGACACCACCAACAAATTGATGGCATTTTGTGCGGATCCATCTGTTGGAAACTTGCACTACACAGAGAGGATGTTCGATTACATACAAGGTCCATCTCTGTTTGTTTATAATGTGATGGTTAAAGCGTATGCCAAAAGGGGTATTTTCAGAAAAGTCCTTTTGCTATTTCAACGGTTGAGGGAAGATGAGTTGTGGCCTGATAATTTTACTTACCCGTTTGTTCTAAAAGCCATTGGTTGCTTAAGGGATGCGAGGAAAGGTGAAAAGGTTCATGGTTTTGTGGTGAAAACGGGAATGGTTTGTGACACTTATGTTTGTAATTCACTTATGGATATGTATGCAGAATTGGGCAAGGTTGGGAATGCCAAGAAGCTGTTCGACGAAATGCCGAGGAGAGATTCTGTTTCTTGGAATGTTTTGATTTCTGGGTATGTTAGGTGTAGGAGATTTGAGGATGCTGTTAATGTATTTAAGGAAATGCAGCAAGAAAGCAATGAGAAACCTGGTGAAGCTACTGTTGTTAGCACTCTTTCTGCCTGTACAGCTCTGAAAAATCTGGCGCTGGGGGTGGAAATTCACAACTATGTTAGAAAGGAGCTTGGTTTTACCACTATAATTAATAATGCATTGTTAGATATGTACGCAAAATGTGGGTGTTTAGATATTGCCCGCAAGATATTTGATGAAATGCCAATGAGAAATGTGATTTGTTGGACCAGCATGATTTCTAGCTATATTAACTGTGGTGATTTAACAGAGGCTAGAGACTTGTTTGATAGAAGTCCAGTTAGAGATGTTGTTCTGTGGACAGCAATGATTAATGGGTATGTGCAGTTCAACCATTTTGATGAGGCTGTGGCCTTGTTTCGCGAAATGCAATTTCAAAAGGTAAAGCCAGATAAGTTCACGGTAGTCGCTCTTCTTACGGGCTGTGCGCAGTTGGGAGCTCTAGAGCAAGGGAAATGGATTCATGGATATCTAGTTGAGAACAGAATAACAATGGATACTGTGGTTGGTACTGCACTCATTGAAATGTATTCCAAATGTGGATGTGTGGATAAATCTTTAGAAATTTTCTATCAGTTGGAGGAGAAGGACACGACATCGTGGACATCAATGATTTGCGGTCTTGCCATGAATGGGGAGACCGGTGAAGCGCTTAAGCTGTTCACAGAAATGGAACTCGAGGGAGCTAAACCTGATGATATCACCTTCATTGGTGTTCTAAGTGCCTGTAGTCATGGTGGATTGGTAGAGGAAGGACGTCGGTATTTCGACTCGATGAAAACGGTTTATCGAATTGAGCCAAAGGTAGAACACTATGGGTGTGCTATCGACCTCCTTGGTCGAGCGGGGCGGTTGGATGAAGCGGAGGAACTGATACGAGAGATTCCCAGTGAAAATGATGCAATTCTGATTCCTCTCTATGGTGCTTTGCTTAGTGCTTGCAGAATCCATAATAATGTTGACATGGGTGAAAGATTAGCCAAAAAACTAGTGAACATAGAATCATGTGATTCTAGCATTCACACACTTCTTGCGAATATATATGCTTTTGCCCACAGGTGGGAAGATGCAAAGGAAGTGAGAAGGAAAATGAAAGAGCTTGGAGTTAAGAAGATGCCTGGATGTAGTTCGATCGAGGTCGATGGCATCGTTCACGAGTTTCTTGTTGGGGATCCATCTCATCCAGAAATGATGGAAATATGCTCCATGTTGGATAGCGTGGTTGGACCATTACTGGGACCAAAGGAATCCGAGCTTGAAATTGTGATACCACTTCACATTGATGGCACTGTTGTGTTGCATCCATTACATGAGGCTGACAAAGTTTCTTGA

Protein sequence

MLPLLIVRRIQFFSRHYSSSLHVVPISPQLSKLTKKSCIEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVGNLHYTERMFDYIQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWPDNFTYPFVLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRKELGFTTIINNALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVVLWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCAQLGALEQGKWIHGYLVENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEALKLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDLLGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDSSIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMMEICSMLDSVVGPLLGPKESELEIVIPLHIDGTVVLHPLHEADKVS

Homology

[Close]

BLAST of CmaCh08G001260 vs. ExPASy Swiss-Prot
Match: Q9C866 (Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E55 PE=2 SV=1)

HSP 1 Score: 686.4 bits (1770), Expect = 3.2e-196
Identity = 333/564 (59.04%), Postives = 419/564 (74.29%), Query Frame = 0


Query: 95  IQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWPDNFTYPFVLKAIGCLRDARKG 154
           +Q PSL +YN M+K+ A    F KVL LF  LR   L+PDNFT P VLK+IG LR   +G
Sbjct: 6   LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65

Query: 155 EKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRC 214
           EKVHG+ VK G+  D+YV NSLM MYA LGK+    K+FDEMP+RD VSWN LIS YV  
Sbjct: 66  EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125

Query: 215 RRFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRKELGFTTIIN 274
            RFEDA+ VFK M QESN K  E T+VSTLSAC+ALKNL +G  I+ +V  E   +  I 
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185

Query: 275 NALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVV 334
           NAL+DM+ KCGCLD AR +FD M  +NV CWTSM+  Y++ G + EAR LF+RSPV+DVV
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245

Query: 335 LWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCAQLGALEQGKWIHGYL 394
           LWTAM+NGYVQFN FDEA+ LFR MQ   ++PD F +V+LLTGCAQ GALEQGKWIHGY+
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305

Query: 395 VENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEAL 454
            ENR+T+D VVGTAL++MY+KCGC++ +LE+FY+++E+DT SWTS+I GLAMNG +G AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365

Query: 455 KLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDL 514
            L+ EME  G + D ITF+ VL+AC+HGG V EGR+ F SM   + ++PK EH  C IDL
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425

Query: 515 LGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDS 574
           L RAG LDEAEELI ++  E+D  L+P+Y +LLSA R + NV + ER+A+KL  +E  DS
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485

Query: 575 SIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDP--SHPE 634
           S HTLLA++YA A+RWED   VRRKMK+LG++K PGCSSIE+DG+ HEF+VGD   SHP+
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545

Query: 635 MMEICSMLDSVVGPLLGPKESELE 657
           M EI SML      +L  +  E++
Sbjct: 546 MDEINSMLHQTTNLMLDLEHKEID 569

[Close]

BLAST of CmaCh08G001260 vs. ExPASy Swiss-Prot
Match: Q9SJZ3 (Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E28 PE=2 SV=1)

HSP 1 Score: 517.7 bits (1332), Expect = 2.0e-145
Identity = 258/606 (42.57%), Postives = 393/606 (64.85%), Query Frame = 0


Query: 39  IEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVGNLHYTERMFDYIQGP 98
           +  L  CK +  LKQIQ+Q+   GL  D   +++L+AFCA      L Y+ ++   I+ P
Sbjct: 57  LSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENP 116

Query: 99  SLFVYNVMVKAYAKRGIFRKVLLLF-QRLRED--ELWPDNFTYPFVLKAIGCLRDARKGE 158
           ++F +NV ++ +++    ++  LL+ Q LR    E  PD+FTYP + K    LR +  G 
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176

Query: 159 KVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRCR 218
            + G V+K  +   ++V N+ + M+A  G + NA+K+FDE P RD VSWN LI+GY +  
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236

Query: 219 RFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRKE-LGFTTIIN 278
             E A+ V+K M+ E   KP + T++  +S+C+ L +L  G E + YV++  L  T  + 
Sbjct: 237 EAEKAIYVYKLMESE-GVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV 296

Query: 279 NALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVV 338
           NAL+DM++KCG +  AR+IFD +  R ++ WT+MIS Y  CG L  +R LFD    +DVV
Sbjct: 297 NALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVV 356

Query: 339 LWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCAQLGALEQGKWIHGYL 398
           LW AMI G VQ     +A+ALF+EMQ    KPD+ T++  L+ C+QLGAL+ G WIH Y+
Sbjct: 357 LWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYI 416

Query: 399 VENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEAL 458
            +  ++++  +GT+L++MY+KCG + ++L +F+ ++ +++ ++T++I GLA++G+   A+
Sbjct: 417 EKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAI 476

Query: 459 KLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDL 518
             F EM   G  PD+ITFIG+LSAC HGG+++ GR YF  MK+ + + P+++HY   +DL
Sbjct: 477 SYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDL 536

Query: 519 LGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDS 578
           LGRAG L+EA+ L+  +P E DA    ++GALL  CR+H NV++GE+ AKKL+ ++  DS
Sbjct: 537 LGRAGLLEEADRLMESMPMEADA---AVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 596

Query: 579 SIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMM 638
            I+ LL  +Y  A+ WEDAK  RR M E GV+K+PGCSSIEV+GIV EF+V D S PE  
Sbjct: 597 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESE 656

Query: 639 EICSML 641
           +I   L
Sbjct: 657 KIYDRL 658

[Close]

BLAST of CmaCh08G001260 vs. ExPASy Swiss-Prot
Match: Q9LSB8 (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 501.9 bits (1291), Expect = 1.1e-140
Identity = 249/609 (40.89%), Postives = 394/609 (64.70%), Query Frame = 0


Query: 39  IEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVGNLHYTERMFDYIQGP 98
           I  L  CK+ DQ KQ+ SQ    G+  +     KL  F      G++ Y  ++F  I  P
Sbjct: 38  ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97

Query: 99  SLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWPDNFTYPFVLKAIGCLRDARK---GE 158
            + V+N M+K ++K     + + L+  + ++ + PD+ T+PF+L   G  RD      G+
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN--GLKRDGGALACGK 157

Query: 159 KVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRCR 218
           K+H  VVK G+  + YV N+L+ MY+  G +  A+ +FD   + D  SWN++ISGY R +
Sbjct: 158 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 217

Query: 219 RFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRK-ELGFTTIIN 278
            +E+++ +  EM++ +   P   T++  LSAC+ +K+  L   +H YV + +   +  + 
Sbjct: 218 EYEESIELLVEMER-NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 277

Query: 279 NALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVV 338
           NAL++ YA CG +DIA +IF  M  R+VI WTS++  Y+  G+L  AR  FD+ PVRD +
Sbjct: 278 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 337

Query: 339 LWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCAQLGALEQGKWIHGYL 398
            WT MI+GY++   F+E++ +FREMQ   + PD+FT+V++LT CA LG+LE G+WI  Y+
Sbjct: 338 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 397

Query: 399 VENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEAL 458
            +N+I  D VVG ALI+MY KCGC +K+ ++F+ ++++D  +WT+M+ GLA NG+  EA+
Sbjct: 398 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 457

Query: 459 KLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDL 518
           K+F +M+    +PDDIT++GVLSAC+H G+V++ R++F  M++ +RIEP + HYGC +D+
Sbjct: 458 KVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDM 517

Query: 519 LGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDS 578
           LGRAG + EA E++R++P   ++I   ++GALL A R+HN+  M E  AKK++ +E  + 
Sbjct: 518 LGRAGLVKEAYEILRKMPMNPNSI---VWGALLGASRLHNDEPMAELAAKKILELEPDNG 577

Query: 579 SIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMM 638
           +++ LL NIYA   RW+D +EVRRK+ ++ +KK PG S IEV+G  HEF+ GD SH +  
Sbjct: 578 AVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSE 637

Query: 639 EICSMLDSV 644
           EI   L+ +
Sbjct: 638 EIYMKLEEL 640

[Close]

BLAST of CmaCh08G001260 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 8.1e-131
Identity = 230/612 (37.58%), Postives = 370/612 (60.46%), Query Frame = 0


Query: 39  IEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVGNLHYTERMFDYIQGP 98
           I  +  C S+ QLKQ    + R G   D  + +KL A  A  S  +L Y  ++FD I  P
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 99  SLFVYNVMVKAYAK-RGIFRKVLLLFQRLREDELWPDNFTYPFVLKAIGCLRDARKGEKV 158
           + F +N +++AYA        +      + E + +P+ +T+PF++KA   +     G+ +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 159 HGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRCRRF 218
           HG  VK+ +  D +V NSL+  Y   G + +A K+F  +  +D VSWN +I+G+V+    
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 219 EDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRK-ELGFTTIINNA 278
           + A+ +FK+M+ E + K    T+V  LSAC  ++NL  G ++ +Y+ +  +     + NA
Sbjct: 214 DKALELFKKMESE-DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANA 273

Query: 279 LLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVVLW 338
           +LDMY KCG ++ A+++FD M  ++ + WT+M+  Y    D   AR++ +  P +D+V W
Sbjct: 274 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAW 333

Query: 339 TAMINGYVQFNHFDEAVALFREMQFQK-VKPDKFTVVALLTGCAQLGALEQGKWIHGYLV 398
            A+I+ Y Q    +EA+ +F E+Q QK +K ++ T+V+ L+ CAQ+GALE G+WIH Y+ 
Sbjct: 334 NALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK 393

Query: 399 ENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEALK 458
           ++ I M+  V +ALI MYSKCG ++KS E+F  +E++D   W++MI GLAM+G   EA+ 
Sbjct: 394 KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVD 453

Query: 459 LFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDLL 518
           +F +M+    KP+ +TF  V  ACSH GLV+E    F  M++ Y I P+ +HY C +D+L
Sbjct: 454 MFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVL 513

Query: 519 GRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDSS 578
           GR+G L++A + I  +P         ++GALL AC+IH N+++ E    +L+ +E  +  
Sbjct: 514 GRSGYLEKAVKFIEAMPIPPST---SVWGALLGACKIHANLNLAEMACTRLLELEPRNDG 573

Query: 579 IHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMME 638
            H LL+NIYA   +WE+  E+R+ M+  G+KK PGCSSIE+DG++HEFL GD +HP   +
Sbjct: 574 AHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 633

Query: 639 ICSMLDSVVGPL 648
           +   L  V+  L
Sbjct: 634 VYGKLHEVMEKL 641

[Close]

BLAST of CmaCh08G001260 vs. ExPASy Swiss-Prot
Match: O23337 (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 456.8 bits (1174), Expect = 4.2e-127
Identity = 230/628 (36.62%), Postives = 372/628 (59.24%), Query Frame = 0


Query: 26  ISPQLSKLTKKSCIEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVG-- 85
           + P ++     + +E L  CKS++ +KQ+ + I R  ++      +KL +F  + SV   
Sbjct: 3   LPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVIN------HKLNSFLFNLSVSSS 62

Query: 86  --NLHYTERMFDYIQG-PSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWPDNFTYPF 145
             NL Y   +F  I   P   V+N  ++  ++    R  +L +QR+R      D F++  
Sbjct: 63  SINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLP 122

Query: 146 VLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRD 205
           +LKA+  +    +G ++HG   K   +CD +V    MDMYA  G++  A+ +FDEM  RD
Sbjct: 123 ILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 182

Query: 206 SVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIH 265
            V+WN +I  Y R    ++A  +F+EM ++SN  P E  + + +SAC    N+     I+
Sbjct: 183 VVTWNTMIERYCRFGLVDEAFKLFEEM-KDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 242

Query: 266 NY-VRKELGFTTIINNALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLT 325
            + +  ++   T +  AL+ MYA  GC+D+AR+ F +M +RN+   T+M+S Y  CG L 
Sbjct: 243 EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLD 302

Query: 326 EARDLFDRSPVRDVVLWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCA 385
           +A+ +FD++  +D+V WT MI+ YV+ ++  EA+ +F EM    +KPD  ++ ++++ CA
Sbjct: 303 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACA 362

Query: 386 QLGALEQGKWIHGYLVENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTS 445
            LG L++ KW+H  +  N +  +  +  ALI MY+KCG +D + ++F ++  ++  SW+S
Sbjct: 363 NLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSS 422

Query: 446 MICGLAMNGETGEALKLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVY 505
           MI  L+M+GE  +AL LF  M+ E  +P+++TF+GVL  CSH GLVEEG++ F SM   Y
Sbjct: 423 MINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 482

Query: 506 RIEPKVEHYGCAIDLLGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMG 565
            I PK+EHYGC +DL GRA  L EA E+I  +P  ++ +   ++G+L+SACRIH  +++G
Sbjct: 483 NITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVV---IWGSLMSACRIHGELELG 542

Query: 566 ERLAKKLVNIESCDSSIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGI 625
           +  AK+++ +E        L++NIYA   RWED + +RR M+E  V K  G S I+ +G 
Sbjct: 543 KFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGK 602

Query: 626 VHEFLVGDPSHPEMMEICSMLDSVVGPL 648
            HEFL+GD  H +  EI + LD VV  L
Sbjct: 603 SHEFLIGDKRHKQSNEIYAKLDEVVSKL 620

[Close]

BLAST of CmaCh08G001260 vs. TAIR 10
Match: AT1G31430.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 686.4 bits (1770), Expect = 2.3e-197
Identity = 333/564 (59.04%), Postives = 419/564 (74.29%), Query Frame = 0


Query: 95  IQGPSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWPDNFTYPFVLKAIGCLRDARKG 154
           +Q PSL +YN M+K+ A    F KVL LF  LR   L+PDNFT P VLK+IG LR   +G
Sbjct: 6   LQTPSLLMYNKMLKSLADGKSFTKVLALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIEG 65

Query: 155 EKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRC 214
           EKVHG+ VK G+  D+YV NSLM MYA LGK+    K+FDEMP+RD VSWN LIS YV  
Sbjct: 66  EKVHGYAVKAGLEFDSYVSNSLMGMYASLGKIEITHKVFDEMPQRDVVSWNGLISSYVGN 125

Query: 215 RRFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRKELGFTTIIN 274
            RFEDA+ VFK M QESN K  E T+VSTLSAC+ALKNL +G  I+ +V  E   +  I 
Sbjct: 126 GRFEDAIGVFKRMSQESNLKFDEGTIVSTLSACSALKNLEIGERIYRFVVTEFEMSVRIG 185

Query: 275 NALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVV 334
           NAL+DM+ KCGCLD AR +FD M  +NV CWTSM+  Y++ G + EAR LF+RSPV+DVV
Sbjct: 186 NALVDMFCKCGCLDKARAVFDSMRDKNVKCWTSMVFGYVSTGRIDEARVLFERSPVKDVV 245

Query: 335 LWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCAQLGALEQGKWIHGYL 394
           LWTAM+NGYVQFN FDEA+ LFR MQ   ++PD F +V+LLTGCAQ GALEQGKWIHGY+
Sbjct: 246 LWTAMMNGYVQFNRFDEALELFRCMQTAGIRPDNFVLVSLLTGCAQTGALEQGKWIHGYI 305

Query: 395 VENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEAL 454
            ENR+T+D VVGTAL++MY+KCGC++ +LE+FY+++E+DT SWTS+I GLAMNG +G AL
Sbjct: 306 NENRVTVDKVVGTALVDMYAKCGCIETALEVFYEIKERDTASWTSLIYGLAMNGMSGRAL 365

Query: 455 KLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDL 514
            L+ EME  G + D ITF+ VL+AC+HGG V EGR+ F SM   + ++PK EH  C IDL
Sbjct: 366 DLYYEMENVGVRLDAITFVAVLTACNHGGFVAEGRKIFHSMTERHNVQPKSEHCSCLIDL 425

Query: 515 LGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDS 574
           L RAG LDEAEELI ++  E+D  L+P+Y +LLSA R + NV + ER+A+KL  +E  DS
Sbjct: 426 LCRAGLLDEAEELIDKMRGESDETLVPVYCSLLSAARNYGNVKIAERVAEKLEKVEVSDS 485

Query: 575 SIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDP--SHPE 634
           S HTLLA++YA A+RWED   VRRKMK+LG++K PGCSSIE+DG+ HEF+VGD   SHP+
Sbjct: 486 SAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFPGCSSIEIDGVGHEFIVGDDLLSHPK 545

Query: 635 MMEICSMLDSVVGPLLGPKESELE 657
           M EI SML      +L  +  E++
Sbjct: 546 MDEINSMLHQTTNLMLDLEHKEID 569

[Close]

BLAST of CmaCh08G001260 vs. TAIR 10
Match: AT2G22410.1 (SLOW GROWTH 1 )

HSP 1 Score: 517.7 bits (1332), Expect = 1.4e-146
Identity = 258/606 (42.57%), Postives = 393/606 (64.85%), Query Frame = 0


Query: 39  IEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVGNLHYTERMFDYIQGP 98
           +  L  CK +  LKQIQ+Q+   GL  D   +++L+AFCA      L Y+ ++   I+ P
Sbjct: 57  LSLLEKCKLLLHLKQIQAQMIINGLILDPFASSRLIAFCALSESRYLDYSVKILKGIENP 116

Query: 99  SLFVYNVMVKAYAKRGIFRKVLLLF-QRLRED--ELWPDNFTYPFVLKAIGCLRDARKGE 158
           ++F +NV ++ +++    ++  LL+ Q LR    E  PD+FTYP + K    LR +  G 
Sbjct: 117 NIFSWNVTIRGFSESENPKESFLLYKQMLRHGCCESRPDHFTYPVLFKVCADLRLSSLGH 176

Query: 159 KVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRCR 218
            + G V+K  +   ++V N+ + M+A  G + NA+K+FDE P RD VSWN LI+GY +  
Sbjct: 177 MILGHVLKLRLELVSHVHNASIHMFASCGDMENARKVFDESPVRDLVSWNCLINGYKKIG 236

Query: 219 RFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRKE-LGFTTIIN 278
             E A+ V+K M+ E   KP + T++  +S+C+ L +L  G E + YV++  L  T  + 
Sbjct: 237 EAEKAIYVYKLMESE-GVKPDDVTMIGLVSSCSMLGDLNRGKEFYEYVKENGLRMTIPLV 296

Query: 279 NALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVV 338
           NAL+DM++KCG +  AR+IFD +  R ++ WT+MIS Y  CG L  +R LFD    +DVV
Sbjct: 297 NALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARCGLLDVSRKLFDDMEEKDVV 356

Query: 339 LWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCAQLGALEQGKWIHGYL 398
           LW AMI G VQ     +A+ALF+EMQ    KPD+ T++  L+ C+QLGAL+ G WIH Y+
Sbjct: 357 LWNAMIGGSVQAKRGQDALALFQEMQTSNTKPDEITMIHCLSACSQLGALDVGIWIHRYI 416

Query: 399 VENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEAL 458
            +  ++++  +GT+L++MY+KCG + ++L +F+ ++ +++ ++T++I GLA++G+   A+
Sbjct: 417 EKYSLSLNVALGTSLVDMYAKCGNISEALSVFHGIQTRNSLTYTAIIGGLALHGDASTAI 476

Query: 459 KLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDL 518
             F EM   G  PD+ITFIG+LSAC HGG+++ GR YF  MK+ + + P+++HY   +DL
Sbjct: 477 SYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDYFSQMKSRFNLNPQLKHYSIMVDL 536

Query: 519 LGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDS 578
           LGRAG L+EA+ L+  +P E DA    ++GALL  CR+H NV++GE+ AKKL+ ++  DS
Sbjct: 537 LGRAGLLEEADRLMESMPMEADA---AVWGALLFGCRMHGNVELGEKAAKKLLELDPSDS 596

Query: 579 SIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMM 638
            I+ LL  +Y  A+ WEDAK  RR M E GV+K+PGCSSIEV+GIV EF+V D S PE  
Sbjct: 597 GIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSSIEVNGIVCEFIVRDKSRPESE 656

Query: 639 EICSML 641
           +I   L
Sbjct: 657 KIYDRL 658

[Close]

BLAST of CmaCh08G001260 vs. TAIR 10
Match: AT3G15930.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 501.9 bits (1291), Expect = 8.0e-142
Identity = 249/609 (40.89%), Postives = 394/609 (64.70%), Query Frame = 0


Query: 39  IEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVGNLHYTERMFDYIQGP 98
           I  L  CK+ DQ KQ+ SQ    G+  +     KL  F      G++ Y  ++F  I  P
Sbjct: 38  ISILGVCKTTDQFKQLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEP 97

Query: 99  SLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWPDNFTYPFVLKAIGCLRDARK---GE 158
            + V+N M+K ++K     + + L+  + ++ + PD+ T+PF+L   G  RD      G+
Sbjct: 98  DVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN--GLKRDGGALACGK 157

Query: 159 KVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRCR 218
           K+H  VVK G+  + YV N+L+ MY+  G +  A+ +FD   + D  SWN++ISGY R +
Sbjct: 158 KLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMK 217

Query: 219 RFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRK-ELGFTTIIN 278
            +E+++ +  EM++ +   P   T++  LSAC+ +K+  L   +H YV + +   +  + 
Sbjct: 218 EYEESIELLVEMER-NLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLE 277

Query: 279 NALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVV 338
           NAL++ YA CG +DIA +IF  M  R+VI WTS++  Y+  G+L  AR  FD+ PVRD +
Sbjct: 278 NALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRI 337

Query: 339 LWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCAQLGALEQGKWIHGYL 398
            WT MI+GY++   F+E++ +FREMQ   + PD+FT+V++LT CA LG+LE G+WI  Y+
Sbjct: 338 SWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYI 397

Query: 399 VENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEAL 458
            +N+I  D VVG ALI+MY KCGC +K+ ++F+ ++++D  +WT+M+ GLA NG+  EA+
Sbjct: 398 DKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAI 457

Query: 459 KLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDL 518
           K+F +M+    +PDDIT++GVLSAC+H G+V++ R++F  M++ +RIEP + HYGC +D+
Sbjct: 458 KVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDM 517

Query: 519 LGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDS 578
           LGRAG + EA E++R++P   ++I   ++GALL A R+HN+  M E  AKK++ +E  + 
Sbjct: 518 LGRAGLVKEAYEILRKMPMNPNSI---VWGALLGASRLHNDEPMAELAAKKILELEPDNG 577

Query: 579 SIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMM 638
           +++ LL NIYA   RW+D +EVRRK+ ++ +KK PG S IEV+G  HEF+ GD SH +  
Sbjct: 578 AVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSE 637

Query: 639 EICSMLDSV 644
           EI   L+ +
Sbjct: 638 EIYMKLEEL 640

[Close]

BLAST of CmaCh08G001260 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 469.2 bits (1206), Expect = 5.8e-132
Identity = 230/612 (37.58%), Postives = 370/612 (60.46%), Query Frame = 0


Query: 39  IEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVGNLHYTERMFDYIQGP 98
           I  +  C S+ QLKQ    + R G   D  + +KL A  A  S  +L Y  ++FD I  P
Sbjct: 34  ISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKP 93

Query: 99  SLFVYNVMVKAYAK-RGIFRKVLLLFQRLREDELWPDNFTYPFVLKAIGCLRDARKGEKV 158
           + F +N +++AYA        +      + E + +P+ +T+PF++KA   +     G+ +
Sbjct: 94  NSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSL 153

Query: 159 HGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRDSVSWNVLISGYVRCRRF 218
           HG  VK+ +  D +V NSL+  Y   G + +A K+F  +  +D VSWN +I+G+V+    
Sbjct: 154 HGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSP 213

Query: 219 EDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIHNYVRK-ELGFTTIINNA 278
           + A+ +FK+M+ E + K    T+V  LSAC  ++NL  G ++ +Y+ +  +     + NA
Sbjct: 214 DKALELFKKMESE-DVKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANA 273

Query: 279 LLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLTEARDLFDRSPVRDVVLW 338
           +LDMY KCG ++ A+++FD M  ++ + WT+M+  Y    D   AR++ +  P +D+V W
Sbjct: 274 MLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAW 333

Query: 339 TAMINGYVQFNHFDEAVALFREMQFQK-VKPDKFTVVALLTGCAQLGALEQGKWIHGYLV 398
            A+I+ Y Q    +EA+ +F E+Q QK +K ++ T+V+ L+ CAQ+GALE G+WIH Y+ 
Sbjct: 334 NALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIK 393

Query: 399 ENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTSMICGLAMNGETGEALK 458
           ++ I M+  V +ALI MYSKCG ++KS E+F  +E++D   W++MI GLAM+G   EA+ 
Sbjct: 394 KHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVD 453

Query: 459 LFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVYRIEPKVEHYGCAIDLL 518
           +F +M+    KP+ +TF  V  ACSH GLV+E    F  M++ Y I P+ +HY C +D+L
Sbjct: 454 MFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVL 513

Query: 519 GRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMGERLAKKLVNIESCDSS 578
           GR+G L++A + I  +P         ++GALL AC+IH N+++ E    +L+ +E  +  
Sbjct: 514 GRSGYLEKAVKFIEAMPIPPST---SVWGALLGACKIHANLNLAEMACTRLLELEPRNDG 573

Query: 579 IHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGIVHEFLVGDPSHPEMME 638
            H LL+NIYA   +WE+  E+R+ M+  G+KK PGCSSIE+DG++HEFL GD +HP   +
Sbjct: 574 AHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 633

Query: 639 ICSMLDSVVGPL 648
           +   L  V+  L
Sbjct: 634 VYGKLHEVMEKL 641

[Close]

BLAST of CmaCh08G001260 vs. TAIR 10
Match: AT4G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 456.8 bits (1174), Expect = 3.0e-128
Identity = 230/628 (36.62%), Postives = 372/628 (59.24%), Query Frame = 0


Query: 26  ISPQLSKLTKKSCIEYLRNCKSMDQLKQIQSQIFRIGLDRDRDTTNKLMAFCADPSVG-- 85
           + P ++     + +E L  CKS++ +KQ+ + I R  ++      +KL +F  + SV   
Sbjct: 3   LPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVIN------HKLNSFLFNLSVSSS 62

Query: 86  --NLHYTERMFDYIQG-PSLFVYNVMVKAYAKRGIFRKVLLLFQRLREDELWPDNFTYPF 145
             NL Y   +F  I   P   V+N  ++  ++    R  +L +QR+R      D F++  
Sbjct: 63  SINLSYALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLP 122

Query: 146 VLKAIGCLRDARKGEKVHGFVVKTGMVCDTYVCNSLMDMYAELGKVGNAKKLFDEMPRRD 205
           +LKA+  +    +G ++HG   K   +CD +V    MDMYA  G++  A+ +FDEM  RD
Sbjct: 123 ILKAVSKVSALFEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 182

Query: 206 SVSWNVLISGYVRCRRFEDAVNVFKEMQQESNEKPGEATVVSTLSACTALKNLALGVEIH 265
            V+WN +I  Y R    ++A  +F+EM ++SN  P E  + + +SAC    N+     I+
Sbjct: 183 VVTWNTMIERYCRFGLVDEAFKLFEEM-KDSNVMPDEMILCNIVSACGRTGNMRYNRAIY 242

Query: 266 NY-VRKELGFTTIINNALLDMYAKCGCLDIARKIFDEMPMRNVICWTSMISSYINCGDLT 325
            + +  ++   T +  AL+ MYA  GC+D+AR+ F +M +RN+   T+M+S Y  CG L 
Sbjct: 243 EFLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLD 302

Query: 326 EARDLFDRSPVRDVVLWTAMINGYVQFNHFDEAVALFREMQFQKVKPDKFTVVALLTGCA 385
           +A+ +FD++  +D+V WT MI+ YV+ ++  EA+ +F EM    +KPD  ++ ++++ CA
Sbjct: 303 DAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACA 362

Query: 386 QLGALEQGKWIHGYLVENRITMDTVVGTALIEMYSKCGCVDKSLEIFYQLEEKDTTSWTS 445
            LG L++ KW+H  +  N +  +  +  ALI MY+KCG +D + ++F ++  ++  SW+S
Sbjct: 363 NLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSS 422

Query: 446 MICGLAMNGETGEALKLFTEMELEGAKPDDITFIGVLSACSHGGLVEEGRRYFDSMKTVY 505
           MI  L+M+GE  +AL LF  M+ E  +P+++TF+GVL  CSH GLVEEG++ F SM   Y
Sbjct: 423 MINALSMHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEY 482

Query: 506 RIEPKVEHYGCAIDLLGRAGRLDEAEELIREIPSENDAILIPLYGALLSACRIHNNVDMG 565
            I PK+EHYGC +DL GRA  L EA E+I  +P  ++ +   ++G+L+SACRIH  +++G
Sbjct: 483 NITPKLEHYGCMVDLFGRANLLREALEVIESMPVASNVV---IWGSLMSACRIHGELELG 542

Query: 566 ERLAKKLVNIESCDSSIHTLLANIYAFAHRWEDAKEVRRKMKELGVKKMPGCSSIEVDGI 625
           +  AK+++ +E        L++NIYA   RWED + +RR M+E  V K  G S I+ +G 
Sbjct: 543 KFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGK 602

Query: 626 VHEFLVGDPSHPEMMEICSMLDSVVGPL 648
            HEFL+GD  H +  EI + LD VV  L
Sbjct: 603 SHEFLIGDKRHKQSNEIYAKLDEVVSKL 620

The following BLAST results are available for this feature:

BLAST of CmaCh08G001260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C866	3.2e-196	59.04	Pentatricopeptide repeat-containing protein At1g31430 OS=Arabidopsis thaliana OX...	[more]
Q9SJZ3	2.0e-145	42.57	Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidop...	[more]
Q9LSB8	1.1e-140	40.89	Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis th...	[more]
O82380	8.1e-131	37.58	Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop...	[more]
O23337	4.2e-127	36.62	Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana OX...	[more]

BLAST of CmaCh08G001260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31430.1	2.3e-197	59.04	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT2G22410.1	1.4e-146	42.57	SLOW GROWTH 1	[more]
AT3G15930.1	8.0e-142	40.89	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G29760.1	5.8e-132	37.58	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT4G14820.1	3.0e-128	36.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 111..264 e-value: 1.0E-30 score: 109.2 coord: 265..391 e-value: 3.2E-30 score: 107.6
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 392..487 e-value: 2.2E-21 score: 78.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 163..327
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 312..597
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 202..235 e-value: 1.4E-8 score: 32.3 coord: 102..129 e-value: 6.2E-4 score: 17.8 coord: 436..468 e-value: 3.0E-7 score: 28.2 coord: 303..327 e-value: 5.8E-4 score: 17.9 coord: 171..200 e-value: 5.1E-5 score: 21.2 coord: 275..301 e-value: 0.0026 score: 15.8 coord: 334..367 e-value: 2.6E-8 score: 31.5
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 578..605 e-value: 0.32 score: 11.4 coord: 275..301 e-value: 3.4E-4 score: 20.7 coord: 507..534 e-value: 0.01 score: 16.0 coord: 172..199 e-value: 7.5E-5 score: 22.7 coord: 304..327 e-value: 1.7E-4 score: 21.6 coord: 102..129 e-value: 0.0028 score: 17.8
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 200..247 e-value: 3.0E-9 score: 37.0 coord: 331..379 e-value: 2.5E-13 score: 50.0 coord: 432..480 e-value: 2.2E-9 score: 37.3
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 573..607 score: 8.725252
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 332..366 score: 12.101333
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 270..304 score: 8.812943
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 200..234 score: 12.024604
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 99..133 score: 10.029647
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 433..467 score: 11.629997
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 169..199 score: 9.952918
None	No IPR available	PANTHER	PTHR47928:SF123	OS06G0597500 PROTEIN	coord: 48..646
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 48..646

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G001260.1	CmaCh08G001260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
cellular_component	GO:0000228	nuclear chromosome
cellular_component	GO:0070603	SWI/SNF superfamily-type complex
molecular_function	GO:0005515	protein binding