CmaCh08G000740 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh08G000740
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionE3 ubiquitin-protein ligase PRT1
LocationCma_Chr08: 388328 .. 396913 (+)
RNA-Seq ExpressionCmaCh08G000740
SyntenyCmaCh08G000740
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGATTTTTGATTTTTGATTTTGATTTTGATTTTGATTTTTGATTTTGGTTGGTAATCGAACAGTGCAATTGCAGCCTGCTATTTGATTCTATTCCGTGAATCACAAATCCCCCATTTTCATGTTTCTATCTGTTCGCCGCCCTATCTTTTCTCTCCTCCGATTTTTTCCCCAGTTTTTCAGAAGATTCGTCTCTCTCCCCTTCTCCAGAAGCTTGTCAATGGCTGATTCTAAGATGCTTGACGATGTGGACTCCGACGACATTCCTCACGCTTTTCTCTGCTGTGTCTGCTTGTGAGTTCTATTCCTCTATCTCTCTGTAAATATCTCTTTCTGTCTTTTGTTTTAGGGGGATTTAAATATGTTGGAATCATTTCTGATTGCTATTGTTTAATACTTGTTGCTTTATTTCAATTTGTTTGGCATGGAGTTTCCTATTCTAAGGATTAGGAATTTTGTTTTTGTTCTATCGGTGCTTCATGTTTGCAGATATGCATGTGCGTGCCCTGCATTGTTGAGATGTTCTATAGATGAGATTAGGAATTAGAATAATCAGTTATTGTCAATGGCGTCCCGAAATTTGCCCTAGTTTTTTTGTGATTTGAATTGGTAGTCGTTTTTAATGGCTGGAGGACTGAACTTGGCCAATGTAAATGGTAAAGAACGGATTTCCGGTGAGATAGCCTCATCCCGCCATCTTACTGCCTTGCGTATTTCAGAACCTTCGTGGAGCTAATGATTGGCTATTTATTGTTTTGGGTTGTCTGGGACCCGCTATAAACCCATATGTCATGGTTAAGATATATAGTTACATGGTTAAGATATATAGTTCCTGAAGGTTTTCATACTAAGGCTATTCTTCTCTATAAAATCATGCATACAAAAAACTTCCAGTTTGGGAAGCCTTTCCTCCTTTGGCCCAAAAGCCACCTAGGTGGGTTGATATCTTACATAATTGGACGAAATGTACTAGTCGTTAACTTTTCATTTTTATGCATTTTGTCTAGAGTGTCAATAGTGAGGAAGACGAGAGATTACCAACCCTCTTTAATAGGTTGAGAGCTCTTCTAGTCCCTTAGGCCAAGCCCAGCAAAGATTGAACCAACCCAAAAAGTATTTTCAATTTTTTGGCCAAGCCTAGAAAAGATTGAAGCATATAAACAATCTATCCCAACAAGAAGCAAACGGGCAAAGGAAAGAAAGATGCAGTCTATCCTTTGTTGTTACTACTATTTGTTTTTATAAGTTCCTTCTCACATGTGGCTGATTTAAGTTGGTTGTGAATTGCAGGGATCTTCTCTACAAGCCAATAGTTCTCTGTGAGTATAATTAAATGCTTACCATAATTTTCCTTTTTTGAGAGTTGCCATCTGTTTGTTGATTTTTGGTTTCTTCTATTTCAGCTTGTGGTCATATTTCATGTTTTTGGTGTGTGCACAAATCCATGAATGGTTTTCGTGAGTCCCACTGTCCAATTTGTAGGCGTCCATATTATCACTTTCCAACCATCTGTGAGATGCTTCACCTATTGATCCTGAAGATGTATCCTATGGCGTACAAGAGAAGGCAAAATCAAACACTAGGTGCGCTTTCTATTTTCTGCTGTTATCACTGTGTAATAATATCTTCAATAGCTGCAATCATGGCTGTTAAAAACAAACATCTCATGGAGATGTATATCATACGAGGTGAGGTGAAATGGTTTTAGCAGTGCACAAATGAATCATAATTTTCAACGATGCTCTGTTCACTCAATGGAAAACGTGAATTAATGTGGACTCAAATGATTGATCTAGTTTATTGGTAGATGGAAACAAAGGCATAAATCTAACAAGCTGATGAGGTAGGGAGTGAAATTAGTTAATAGTCGTGTAACCTGCATAAATCATCAGAGTGCAGCAACAAAATGAGATAGGGAGTGAAGTTAGTGAACGTGAAGAAATTATAAAGAAAATGAAGAAGCATTGACCTGATGTTTGATCCAGTTTTGCCGTTACTTTTTGAAGAAGAAGAAGAATATAACACAGTGGATGAAAATAAAAATAAACACAAAGCAGTCATGTCAAAACAATAATATTTGCCATCTTGACCAGACGGAAGTGAATAAAATGAATGTACAAGATTTAAAATGCGTAATTCTTTAGTTAATGTACCTACTCTTCTATATTTCTCTCGATAAAATTACTTTTTCTTGATGAAACTGCTAGTGTCCCCAAGTCATATTACTTGATTAATTTAATAATTTATACTATATATCTTATCTTCCCTCTTTCATATTTTTTTTTATCAATGATTATTGTTGCAAGTCTAAATCATCTTGCTACTTTTCATATTAGTTTTTAGAGAGGTCCATGTGCATTTTTTAATATAAAAAGACCAACTAAATTCCTAGATACTAGGTAACAATAAAACTAAATAAATCATTCGATACTGGGTAACAATACAAATAAATTAGGGAGGTCATTCCTTCGACACTCCCCTAAAGCTGAGGAATAGTTATCATCCATTCTCAGCTTGAAAACTAATTCATGAAACATTGAGTTGTGAACCCTGTATGTAGTATACATGTTGGTTGAAGCTATGAGGGCACATTAGTAATGCATACTATCCTCTTCTCAAATTTCTCCTTGATAAAATATCAATCAATTTCAATATGTTTTGTCCCATTATGCTAGATAGGATTATGTGCAATATTTATAATTTATTTGTTGTGTACAACTTTAGTGGTCCTTCTCCCTTAATCTTTTAAGTCATCAAGGATCATCTTCAACTATAAGAGTTCACATAGCTCTTCTGCAATAATTCAGAATTCTGATTAGGCAGATGATCTAGCTACCACATTTTGCTTTTTACTTTTCCATGTTGCCAAATTACTTATAAGAAAAGTATAATACCCTTCTTCTATTCACCACTGGTCTAGCATAGTCAGCATCGATGTTTGCTTCCAATGTAAGAGAATTGTTCTGTTTGAACAAAATTCTTTTTCCTGAAGTTCTTTTCAGGTAACATAATACTCAATTGTCTGAAGGTGAGAATCTCACAGATCATGTATGAATTGGATAATTACACTCATTGAGTATGCTATGTTTGGTTGAATATGAGCTAGATATATAAACCTCCGGTACATTTTTCTGTTCGCCATAGGCTCTTCTTTTGACTCTCCCAATTTTTTATGTGATCCATTGGTGTTGATCACATATTTCTATTGTGATATGAAAATACCTTGAGCTGAAATTACCTTAGCCTTCCAAGTTCTTTGATCTCAAATTCTTTCATCAATTTCCTTCTTCATTGTATCTAGTGACTAGATGTCGTTTACATACACTAGAAGCACTGTAACTCTCCTTGATTAATGCTTGATAAAGAGAGAGTGGTTTCCTTGACTTTTTGCTTGTACCCACAGTCTTTCATTATCTTTGTGAATCTTCCAAACCACGTCGTTGGTGAATGTTTTAGTCTATGCAAGGCCTTCCTCAATTTGCATACTTACGTCTTGAACTTTCAAATCCCGGAGGAATATCCTCATCTAGATCGTTGTGAAGAAATGCTTCTTCATATCATACTATGAGAGCTGTCAATTTAAGTTGGTAGCCAATGGTGTTCATCTTTGAACTGAGGCAAATGTCTCTTGGTAACATATACCGTAAGTTTGAGTGTATCCCTTAGCTACTAACATTGTCTTATACCTTTCCGACGTTCCATCAACCTTTTACTTTACTGTAAAAAGGCAACTACCCAACCTTTTATCTTTTGGCCTATCTACAAGTTACCACATGTTAATTCTTTTCTAGAGCATGTATTTCTTCTCTTATAGCATCCGGTCATTCTCTTTTGGATAAACCTTTAGAAACAGTGTTAGGTATGACAATTGCATTTAGACTCACAATGAAACTCTTGTATGATGGGAATAGTCTTTCAAGAAAGATATAGTTTGATAGGGGGTATAAGGGCCATTTTTGTGCATTCTCTAGTAGGTTTTAGGAGAGTTATGAGTCTATCATCTATTGATACTTGTGTTACATTTTCATTTTGTGTCGAGCTGAATGTTTGGACTTATATCGGTTCTGAAATGATTTTTTCTTCTAGCATATACCTGAGAGACAATGGATCTGGCAATGGAGGTGGAATGTATAATTCAGTTGCTAACTCCATGGTAGTAGGGGCAGACTCATGATTAGAGTGTGTCAAAGGGTTCATTAGTTTTCCAAGGAGTTAAGAATTGGTTCTATAATTGGTTCTATGTGCTGGTTATTTAGTGTGTCAAGGGGTTCATTAGTTTTCCAAGGATCCTCTTCAATCTCTATGTTCTTTCCCTAAAGAGAGGCCTTAGAGAAGAACGGTTTGTGCTCGGTGAATTTCACATCAATTGAAGTGTAAGACTTCCTACATGTTGGGTTGTAACATTTGTACCCCTGTGTGGTTGAAGAATATCCTAAAAAGACACATTTTATTACTCTTGAATCAAGTTTATCTCCTTGAGTGTTGTGAACATGAACAAAGGCGGTGCACCCAAATACTTGGAGTGTGAGGCCATTTGATGTTCGAAAGTGAGGATGAAATTGGTTGAGGATTTCTATTGAGCTTAGATTATTCAGGGCTTGAGATGAAAGATGATTAATCATGTGAGTTGCAGTAGGAGATGTCTCTCTCTAGTAAGTTTTTGGCATGTTTCTATGAAAAACAATGCTCGGGTAATGTGTAAAAGGAGTCCAATTTTCCTTTCAGCCACTCCATTTTGTTGTGGTGTGTTAACACATAAAGAATCATGGATAATGCCTTGAGATAAAAGAATATAGGGATAAGATTTGATTGAGGTAATTTCTAGCATTGTATGTCTAAATGTTTTGATTTTGACTCCAAATTGTGTCTGAATCATTGAGTGAAAGGTAGGAATAATATTACTAAGGCTGTCATGGGTAAGCTTTTGTATGGATAGGAAACTATTAGAAAGTTTTGGGATGTGTAGGATGTTTTTTAGTGTAAGGGTTTGAAAATAAATACCTTGCCTATTTTTGCAACGGGGGCATTGGTTCTATTTGCCTATATAATTTTTCGACTACTCAAGAATGATTTATATGTTTTAGTCATGATCAATTGCACAAAAGTCTATAATCCAAGAGCTAACCTAACTTATCTCTGAAGGGTTTATACAAAAAGTGAATGAAAACTTACTTAAGATTGTCAATGCACTAGAACGTGATGGTTTGTCGAGAGGTGTCCAAGAACACTTTCAATCTCTCAATCTCTTCATTATTGAATCCACTAGTCTCCACAATTGGTGGTTTTGTTTTTGATTTGGACTCCTCTACCATGTGTGCTTGTGCCTTCGACATTTCTCCCTTGTTTCCTTGATTTTGTGAGCTTCTCCGATTTCTCCATTCACAACTGGGAGGCATTTCGTTCAACTTCTGATGACTCTTCTTCGTGTGTCGCAGTTTTTTGCAACAAAGTACACCATAAATTGTCTTTGTTACTCTCCATTGGTTTTCTTTTCTGTTGTTTCTATCTTTCTCTACAGCAAAGGCCGATGCCATATAAAATTGGATTGTTTGTCAAGCATAAGGCTCCATCAGCTCTCTTATGTTTGAATAAGGGAAATTGTTTCTTTTAGGGAGGATGTTTTCTCTCTTTTGATGATTTGTAGACATACTTGGTCGAACTCGTTGTTGAGACCTGGTAAGAAATCATAGACACGATCTGCTTTCAATAAATTTCTTCAGAATTAAGTAGAGACCTGGTAAAAACTCATAGACACGATCTGTTTCGATAAATTTCTTCAGAATTAAGATATATGTAGTACAGCTCATCTCGAATATCCTATAATAATTGAGTTCTGGCCACAATGTTTGTGGACATTGACATATTCAATGACAATTTTTCCTTCTTGCTTCATGGCTTTGGTCATGATCTTCATTCATAGATTTGAGCAGCATCTCTATCCATGGCGTAAATGCAATGAATGAAATTTCATATGGAAAAACACAAATGTAAATAAATCCCTAGATGTTAGGTATACAAATACATTTGGGAGGTCAACTACTTACCCTATTTAGTGGGATTACACAAATATCTCTTAACTTAAGGTTTTAGGAATTACACATATATTGGTCATTCCTTCAACATTTATTATGCTCCATATTGAAAAAAATAATTTAAAACACAAATGATTCATTACTTTATGTATTTGATGTTTATGCTGAAATTCAAGTGAATCTCAAATATATTATTGAATAAGTGGAACTATATTCGTGCAAATATAATTTCCTTAATGCAAATGAATAATGGTTCATTGCTGATTTTTCTATTTTTGGGCAGATATATTTTAATCTTTTAGTTCACTTCTTTACCATTCTCTTTTTACTGTTTTATTCATTTAAATAATTCCATTTTCAGAAGAGGAAAGGAAACTTGGCCTTTTCTCTCCTCAATATGATTCCCTTGCATGTGGCTCCCGAGCTGGTGAAAAGATGGAACACCTAGAAGATTCTGCTAATGGTGAGATGAATGCAAATACAAAAAATGACAACGTTGTTGCTGAATTAATTTTAGAAGAAAATTCTGAAGTTGTTCGATCTGCTTCGGTTGAAATCCTCAATTCTCTTGGAGATCTTCACGGTCAAAAGACTCAAAACCAGGAGACGGTTACAGTTGCCGATGTGCTTTGTCGAGCGTGCACCCAATTGCTCCTCCGTCCAGTGGTTCTTAACTGTGGTCATGGTATATATAATCTCTTTTCATCCGTGTGGGCCTGCATTTTTTTTTTCTATCCTCAATTATATACTAAAAGTAATATTTAAAATATCAGGGGTATTTCAAATTTAATACCATTCCTAAATTATCTTGACTTCAATGCCAGAAAGGTTGCAATATAACTTATTTTTATGTTTACAGCATTTTGTGAGAGTTGTATCAACTTGCGAGTTGAGACACTTGAGTGTCAAGTTTGCCAGTCTTTGCAACCAAGGGGATTTCCAAATGTCTGTTTGGAGCTTGATCAGTTTTTGAAGGAACAACTTCCTGAAGAATATAAGCTCCGAAGTGACTCAGTTCAGCTTAAACTAGCTGAAACTTTCAAGCATGAGAGTCCAACTTCCTGTATGTTTATTTACACTTGCTTAATTTATCAGCTTCAATATTATAGCATTTGTGATCTTAGATTAGTCCATTTGTTGTGCTTGTAGTGCGTGCTTCTCATTTCATGCTACTTCTCTTTTTTGTTTCTTCATTTCTAGTTCATGTATTTTTTGCACTTCTGTTCATGCTCAACTTGTGCGGAATGAAGGTAGTTTAGTTGTCCAAACTATATATGTGTTCTTGCTTGTAGGAAAATTGCTTTGTGAATTGTTTGAGTAGGATGCCTTATCCAATGCATGCTAGGCCTTAACATGGACTGTCGTAAGAGCTGGAATAGATAGACCATCTAAAATTTCCGGTATGTCTATATGATCATTGAAGTGATGCAATTTTCTTTATTTCAAAGTTTACCTGTCTATATGATCAGGAAAACAAAACTTTGTACACATATAGGGATAGAAAATGATGGTGTAATTTACAATTTTGTTATTCTTCAATCCTTCGGATCAGTGTAGAAATGTACTTATAATGCTTGATGGCATATTGTTGCTCTACAATATTGAAAATTACTCATCAAGGTATTCTCATTAATACAAAATTAGTCTGTATAATATCAGTTTTCTTTATTTTAAGTTTATTATTTGCTTCCAGGTTCCAGTGAAGGGGGTATGAAGGGACAGGGTCTACCAAGATGGGACGAAGTTGCTTCTAAAGTGCATCCTGCCGTTGGATGCGATTCGTGTGGGGTAATTTCCTTTTATTTTTATCATTCCTCTCATACTGTTTGAGATCTTTGTTGCTGAACTATAAAAGATATAACCAAACAACGAGTTAGAATAATATTGAAATATAAAAGATAGAAAAACTGCAATATAACTTCAAGTATTCAACGCACGTGGAACCTCCCTCTTCTTGAACACTCGCACTCGAGACTAAACTTACTAAAAACTGTCGTCGTTCATTTCATCCCACTCCATCTCATTATAACAAACTCTTTGGTTTGTAGCCGATGCTCTGATAAGAGTAACTTTATGGTATCTTATTGAGTACAAATAAGGATATTTATTCAAGAAAGAATCATTTGGTTAGTGATAGTACTCTCTTATTGTACACTGCAGATGTATCCCATCATTGGTGATAGATACAAGTGCGAGGATTGTTTCGAGGAAGTAGGTTTTGACCTCTGTGGTGAATGCTATAATACACGTTCGAAGCGTCCCGGTCGGTTCAACCAACAACATAGACCAGAGCACAAGTTTAAGCTTGTATTTCCTACAATGTTTTCAACTATGAGGTCGAGGATAGTGACAGAAATAATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGATGAAGGTTCAGAAAGTTCAGAGGACATGGGCGCTATTCTCGAACTATCTAGCGATGCTCGTGAGAGCGAAGAGAACGATTCTGATGTTGATGTTAGAACTCAGACAAACTCCAATGACAGTAGAACTGATCGAAATATGTCTCGACCTACCTAA

mRNA sequence

TTTTGATTTTTGATTTTTGATTTTGATTTTGATTTTGATTTTTGATTTTGGTTGGTAATCGAACAGTGCAATTGCAGCCTGCTATTTGATTCTATTCCGTGAATCACAAATCCCCCATTTTCATGTTTCTATCTGTTCGCCGCCCTATCTTTTCTCTCCTCCGATTTTTTCCCCAGTTTTTCAGAAGATTCGTCTCTCTCCCCTTCTCCAGAAGCTTGTCAATGGCTGATTCTAAGATGCTTGACGATGTGGACTCCGACGACATTCCTCACGCTTTTCTCTGCTGTGTCTGCTTGGATCTTCTCTACAAGCCAATAGTTCTCTCTTGTGGTCATATTTCATGTTTTTGGTGTGTGCACAAATCCATGAATGGTTTTCGTGAGTCCCACTGTCCAATTTGTAGGCGTCCATATTATCACTTTCCAACCATCTGTGAGATGCTTCACCTATTGATCCTGAAGATGTATCCTATGGCGTACAAGAGAAGGCAAAATCAAACACTAGAAGAGGAAAGGAAACTTGGCCTTTTCTCTCCTCAATATGATTCCCTTGCATGTGGCTCCCGAGCTGGTGAAAAGATGGAACACCTAGAAGATTCTGCTAATGGTGAGATGAATGCAAATACAAAAAATGACAACGTTGTTGCTGAATTAATTTTAGAAGAAAATTCTGAAGTTGTTCGATCTGCTTCGGTTGAAATCCTCAATTCTCTTGGAGATCTTCACGGTCAAAAGACTCAAAACCAGGAGACGGTTACAGTTGCCGATGTGCTTTGTCGAGCGTGCACCCAATTGCTCCTCCGTCCAGTGGTTCTTAACTGTGGTCATGCATTTTGTGAGAGTTGTATCAACTTGCGAGTTGAGACACTTGAGTGTCAAGTTTGCCAGTCTTTGCAACCAAGGGGATTTCCAAATGTCTGTTTGGAGCTTGATCAGTTTTTGAAGGAACAACTTCCTGAAGAATATAAGCTCCGAAGTGACTCAGTTCAGCTTAAACTAGCTGAAACTTTCAAGCATGAGAGTCCAACTTCCTGTTCCAGTGAAGGGGGTATGAAGGGACAGGGTCTACCAAGATGGGACGAAGTTGCTTCTAAAGTGCATCCTGCCGTTGGATGCGATTCGTGTGGGATGTATCCCATCATTGGTGATAGATACAAGTGCGAGGATTGTTTCGAGGAAGTAGGTTTTGACCTCTGTGGTGAATGCTATAATACACGTTCGAAGCGTCCCGGTCGGTTCAACCAACAACATAGACCAGAGCACAAGTTTAAGCTTGTATTTCCTACAATGTTTTCAACTATGAGGTCGAGGATAGTGACAGAAATAATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGATGAAGGTTCAGAAAGTTCAGAGGACATGGGCGCTATTCTCGAACTATCTAGCGATGCTCGTGAGAGCGAAGAGAACGATTCTGATGTTGATGTTAGAACTCAGACAAACTCCAATGACAGTAGAACTGATCGAAATATGTCTCGACCTACCTAA

Coding sequence (CDS)

ATGTTTCTATCTGTTCGCCGCCCTATCTTTTCTCTCCTCCGATTTTTTCCCCAGTTTTTCAGAAGATTCGTCTCTCTCCCCTTCTCCAGAAGCTTGTCAATGGCTGATTCTAAGATGCTTGACGATGTGGACTCCGACGACATTCCTCACGCTTTTCTCTGCTGTGTCTGCTTGGATCTTCTCTACAAGCCAATAGTTCTCTCTTGTGGTCATATTTCATGTTTTTGGTGTGTGCACAAATCCATGAATGGTTTTCGTGAGTCCCACTGTCCAATTTGTAGGCGTCCATATTATCACTTTCCAACCATCTGTGAGATGCTTCACCTATTGATCCTGAAGATGTATCCTATGGCGTACAAGAGAAGGCAAAATCAAACACTAGAAGAGGAAAGGAAACTTGGCCTTTTCTCTCCTCAATATGATTCCCTTGCATGTGGCTCCCGAGCTGGTGAAAAGATGGAACACCTAGAAGATTCTGCTAATGGTGAGATGAATGCAAATACAAAAAATGACAACGTTGTTGCTGAATTAATTTTAGAAGAAAATTCTGAAGTTGTTCGATCTGCTTCGGTTGAAATCCTCAATTCTCTTGGAGATCTTCACGGTCAAAAGACTCAAAACCAGGAGACGGTTACAGTTGCCGATGTGCTTTGTCGAGCGTGCACCCAATTGCTCCTCCGTCCAGTGGTTCTTAACTGTGGTCATGCATTTTGTGAGAGTTGTATCAACTTGCGAGTTGAGACACTTGAGTGTCAAGTTTGCCAGTCTTTGCAACCAAGGGGATTTCCAAATGTCTGTTTGGAGCTTGATCAGTTTTTGAAGGAACAACTTCCTGAAGAATATAAGCTCCGAAGTGACTCAGTTCAGCTTAAACTAGCTGAAACTTTCAAGCATGAGAGTCCAACTTCCTGTTCCAGTGAAGGGGGTATGAAGGGACAGGGTCTACCAAGATGGGACGAAGTTGCTTCTAAAGTGCATCCTGCCGTTGGATGCGATTCGTGTGGGATGTATCCCATCATTGGTGATAGATACAAGTGCGAGGATTGTTTCGAGGAAGTAGGTTTTGACCTCTGTGGTGAATGCTATAATACACGTTCGAAGCGTCCCGGTCGGTTCAACCAACAACATAGACCAGAGCACAAGTTTAAGCTTGTATTTCCTACAATGTTTTCAACTATGAGGTCGAGGATAGTGACAGAAATAATGTTAGAGGAAGGTTCTACAACCTTTATTATTGCTAATGATGAAGGTTCAGAAAGTTCAGAGGACATGGGCGCTATTCTCGAACTATCTAGCGATGCTCGTGAGAGCGAAGAGAACGATTCTGATGTTGATGTTAGAACTCAGACAAACTCCAATGACAGTAGAACTGATCGAAATATGTCTCGACCTACCTAA

Protein sequence

MFLSVRRPIFSLLRFFPQFFRRFVSLPFSRSLSMADSKMLDDVDSDDIPHAFLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHFPTICEMLHLLILKMYPMAYKRRQNQTLEEERKLGLFSPQYDSLACGSRAGEKMEHLEDSANGEMNANTKNDNVVAELILEENSEVVRSASVEILNSLGDLHGQKTQNQETVTVADVLCRACTQLLLRPVVLNCGHAFCESCINLRVETLECQVCQSLQPRGFPNVCLELDQFLKEQLPEEYKLRSDSVQLKLAETFKHESPTSCSSEGGMKGQGLPRWDEVASKVHPAVGCDSCGMYPIIGDRYKCEDCFEEVGFDLCGECYNTRSKRPGRFNQQHRPEHKFKLVFPTMFSTMRSRIVTEIMLEEGSTTFIIANDEGSESSEDMGAILELSSDARESEENDSDVDVRTQTNSNDSRTDRNMSRPT
Homology
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BLAST of CmaCh08G000740 vs. ExPASy Swiss-Prot
Match: Q8LBL5 (E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana OX=3702 GN=PRT1 PE=2 SV=2)

HSP 1 Score: 332.4 bits (851), Expect = 8.1e-90
Identity = 183/402 (45.52%), Postives = 246/402 (61.19%), Query Frame = 0 

Query: 41  DDVDSDDIPHAFLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHF 100
           D+   ++IP  FLCCVCL+LLYKPIVLSCGH+SCFWCVHKSMNGFRESHCPICR PY HF
Sbjct: 13  DESQEEEIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHF 72

Query: 101 PTICEMLHLLILKMYPMAYKRRQNQTLEEERKLGLFSPQYD-----SLACGSRAG----E 160
           P++C+ L+ L+ KMYP+A+K+R+ Q L+EE++   FSPQ D     S+  G        +
Sbjct: 73  PSVCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQIDLVLDLSVCSGDSLNVSDKQ 132

Query: 161 KMEHLEDSANGEMNANTKNDNVVAELILEENSEVVRSASVEI-LNSLGDLHGQKTQNQET 220
           K+E   ++AN   +++++ D       + +N E   + ++ +  N L  L   K   Q  
Sbjct: 133 KVEECSNAANLLSSSSSRGDIP----CIPKNQEPTDAKALNVHENEL--LKDNKVSKQ-- 192

Query: 221 VTVADVLCRACTQLLLRPVVLNCGHAFCESCI---NLRVETLECQVCQSLQPRGFPNVCL 280
           ++  D+LC AC +LL+RPVVLNCGH +CE C+       E ++CQ C    PRGFP VCL
Sbjct: 193 ISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKVCL 252

Query: 281 ELDQFLKEQLPEEYKLRSDSVQLKLA-------ETFKHESPTSCSSEGGMKGQGLPRWDE 340
            L+Q L+E  PEEY  RS  VQ  LA       +++  E P S S++        P    
Sbjct: 253 ILEQLLEENFPEEYNSRSSKVQKTLAHNSKGNIQSYLKEGP-SLSNDNNNDD---PWLAN 312

Query: 341 VASKVHPAVGCDSCGMYPIIGDRYKCEDCFEEVGFDLCGECYNTRSKRPGRFNQQHRPEH 400
             S VH   GCDSCG+YPIIGDRY+C+DC EE+G+DLC +CY T SK PGRFNQQH P+H
Sbjct: 313 PGSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDH 372

Query: 401 KFKLV-FPTMFSTMRS--RIVTEIMLEEGSTTFIIANDEGSE 420
           + +L   P +     S   ++  ++  EG  T     DEG E
Sbjct: 373 RLELARSPQVLINFNSIGILLGPVISNEGMDT-----DEGEE 397

[Close]
BLAST of CmaCh08G000740 vs. ExPASy Swiss-Prot
Match: O95714 (E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-06
Identity = 23/59 (38.98%), Postives = 32/59 (54.24%), Query Frame = 0 

Query: 320  EVASKVHPAVGCDSCGMYPIIGDRYKCEDCFEEVGFDLCGECYNTRSKRP----GRFNQ 375
            E+   +HP V CD C M+PI G R+KC +C +   FD C  C+ T+        GR N+
Sbjct: 2697 ELVPSIHPGVTCDGCQMFPINGSRFKCRNCDD---FDFCETCFKTKKHNTRHTFGRINE 2752

[Close]
BLAST of CmaCh08G000740 vs. ExPASy Swiss-Prot
Match: Q5D7I6 (Tripartite motif-containing protein 5 OS=Alouatta sara OX=121123 GN=TRIM5 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.1e-05
Identity = 32/107 (29.91%), Postives = 49/107 (45.79%), Query Frame = 0 

Query: 47  DIPHAFLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICR--------RPYY 106
           +I     C +CL+LL +P+ L CGH  C  C+  +    RE  CP+CR        RP  
Sbjct: 8   NIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESRERSCPLCRVSYHSENLRPNR 67

Query: 107 HFPTICEMLHLLILKMYPMAYKRRQNQTLEEERKLGLFSPQYDSLAC 146
           H   I E L  ++L        ++ ++      KL LF  Q+ ++ C
Sbjct: 68  HLANIAERLREVMLS---PEEGQKVDRCARHGEKLLLFCQQHGNVIC 111

[Close]
BLAST of CmaCh08G000740 vs. ExPASy Swiss-Prot
Match: Q5A1M4 (Transcriptional regulator of yeast form adherence 3 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=TRY3 PE=2 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 1.4e-04
Identity = 30/101 (29.70%), Postives = 50/101 (49.50%), Query Frame = 0 

Query: 52  FLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHFPTICEMLHLLI 111
           + C +C+++ YKPI LSCGH+ C  C+ K M    ++ CP+CR+           L L  
Sbjct: 396 YSCPICMNIAYKPIRLSCGHLFCVRCLVK-MKQDDKTSCPLCRKENAILYADSSNLDLES 455

Query: 112 LKMYPMAYKRRQNQTLEEERKLGLFSPQYDSLACGSRAGEK 153
           +++    + R   + L E  K      +Y+ L   + +GEK
Sbjct: 456 MELMKKYFPREVKEKLRERDK-----ERYNELRKNANSGEK 490

[Close]
BLAST of CmaCh08G000740 vs. ExPASy Swiss-Prot
Match: B8B5U8 (Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27296 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.3e-04
Identity = 30/108 (27.78%), Postives = 49/108 (45.37%), Query Frame = 0 

Query: 44  DSDDIPHAFLCCVCLDLLYKPIVLSCGHISCFWC---------VHKSMNGFRESHCPICR 103
           DS  +  +  C +CLD ++ P+ LSCGHI C+ C         V    +  R+S CP+CR
Sbjct: 207 DSMRVDISLTCSICLDTVFDPVALSCGHIYCYLCSCSAASVTIVDGLKSAERKSKCPLCR 266

Query: 104 RPYYHFPTICEMLHLLILKMYPMAYKRRQNQTLEEERKLGLFSPQYDS 143
           +    FP    +  L +L  Y       +   +E   ++ L    ++S
Sbjct: 267 QAGV-FPNAVHLDELNMLLSYSCPEYWEKRIQMERVERVRLAKEHWES 313

[Close]
BLAST of CmaCh08G000740 vs. TAIR 10
Match: AT3G24800.1 (proteolysis 1 )

HSP 1 Score: 332.4 bits (851), Expect = 5.8e-91
Identity = 183/402 (45.52%), Postives = 246/402 (61.19%), Query Frame = 0 

Query: 41  DDVDSDDIPHAFLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHF 100
           D+   ++IP  FLCCVCL+LLYKPIVLSCGH+SCFWCVHKSMNGFRESHCPICR PY HF
Sbjct: 13  DESQEEEIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHCPICRDPYVHF 72

Query: 101 PTICEMLHLLILKMYPMAYKRRQNQTLEEERKLGLFSPQYD-----SLACGSRAG----E 160
           P++C+ L+ L+ KMYP+A+K+R+ Q L+EE++   FSPQ D     S+  G        +
Sbjct: 73  PSVCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQIDLVLDLSVCSGDSLNVSDKQ 132

Query: 161 KMEHLEDSANGEMNANTKNDNVVAELILEENSEVVRSASVEI-LNSLGDLHGQKTQNQET 220
           K+E   ++AN   +++++ D       + +N E   + ++ +  N L  L   K   Q  
Sbjct: 133 KVEECSNAANLLSSSSSRGDIP----CIPKNQEPTDAKALNVHENEL--LKDNKVSKQ-- 192

Query: 221 VTVADVLCRACTQLLLRPVVLNCGHAFCESCI---NLRVETLECQVCQSLQPRGFPNVCL 280
           ++  D+LC AC +LL+RPVVLNCGH +CE C+       E ++CQ C    PRGFP VCL
Sbjct: 193 ISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKVCL 252

Query: 281 ELDQFLKEQLPEEYKLRSDSVQLKLA-------ETFKHESPTSCSSEGGMKGQGLPRWDE 340
            L+Q L+E  PEEY  RS  VQ  LA       +++  E P S S++        P    
Sbjct: 253 ILEQLLEENFPEEYNSRSSKVQKTLAHNSKGNIQSYLKEGP-SLSNDNNNDD---PWLAN 312

Query: 341 VASKVHPAVGCDSCGMYPIIGDRYKCEDCFEEVGFDLCGECYNTRSKRPGRFNQQHRPEH 400
             S VH   GCDSCG+YPIIGDRY+C+DC EE+G+DLC +CY T SK PGRFNQQH P+H
Sbjct: 313 PGSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDH 372

Query: 401 KFKLV-FPTMFSTMRS--RIVTEIMLEEGSTTFIIANDEGSE 420
           + +L   P +     S   ++  ++  EG  T     DEG E
Sbjct: 373 RLELARSPQVLINFNSIGILLGPVISNEGMDT-----DEGEE 397

[Close]
BLAST of CmaCh08G000740 vs. TAIR 10
Match: AT3G58030.1 (RING/U-box superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.4e-04
Identity = 38/178 (21.35%), Postives = 75/178 (42.13%), Query Frame = 0 

Query: 52  FLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHFPTICEMLHLLI 111
           F C +CLDL  +P++  CGH+ C+ C+++ +       CP+C+          E+    +
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCKG---------EVTSKTV 196

Query: 112 LKMYPMA-YKRRQNQTLEEERKLGLFSPQYDSLACGSRAGEKMEHLEDSANGEMNANTKN 171
             +Y    +KR   ++L+ +  +   + + +SL    +       +E+      N   ++
Sbjct: 197 TPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRFDRD 256

Query: 172 DNVVAELILEENSEVVRSASVEILNSLGDLHGQKTQNQETVTVADVLCRACTQLLLRP 229
              V +    E SE V   +  ILN L    G +++  +    A  +  A   + L P
Sbjct: 257 STPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASEDIDLNP 305

[Close]
BLAST of CmaCh08G000740 vs. TAIR 10
Match: AT3G58030.2 (RING/U-box superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.4e-04
Identity = 38/178 (21.35%), Postives = 75/178 (42.13%), Query Frame = 0 

Query: 52  FLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHFPTICEMLHLLI 111
           F C +CLDL  +P++  CGH+ C+ C+++ +       CP+C+          E+    +
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCKG---------EVTSKTV 196

Query: 112 LKMYPMA-YKRRQNQTLEEERKLGLFSPQYDSLACGSRAGEKMEHLEDSANGEMNANTKN 171
             +Y    +KR   ++L+ +  +   + + +SL    +       +E+      N   ++
Sbjct: 197 TPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRFDRD 256

Query: 172 DNVVAELILEENSEVVRSASVEILNSLGDLHGQKTQNQETVTVADVLCRACTQLLLRP 229
              V +    E SE V   +  ILN L    G +++  +    A  +  A   + L P
Sbjct: 257 STPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASEDIDLNP 305

[Close]
BLAST of CmaCh08G000740 vs. TAIR 10
Match: AT3G58030.3 (RING/U-box superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.4e-04
Identity = 38/178 (21.35%), Postives = 75/178 (42.13%), Query Frame = 0 

Query: 52  FLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHFPTICEMLHLLI 111
           F C +CLDL  +P++  CGH+ C+ C+++ +       CP+C+          E+    +
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCKG---------EVTSKTV 196

Query: 112 LKMYPMA-YKRRQNQTLEEERKLGLFSPQYDSLACGSRAGEKMEHLEDSANGEMNANTKN 171
             +Y    +KR   ++L+ +  +   + + +SL    +       +E+      N   ++
Sbjct: 197 TPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRFDRD 256

Query: 172 DNVVAELILEENSEVVRSASVEILNSLGDLHGQKTQNQETVTVADVLCRACTQLLLRP 229
              V +    E SE V   +  ILN L    G +++  +    A  +  A   + L P
Sbjct: 257 STPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASEDIDLNP 305

[Close]
BLAST of CmaCh08G000740 vs. TAIR 10
Match: AT3G58030.4 (RING/U-box superfamily protein )

HSP 1 Score: 45.4 bits (106), Expect = 1.4e-04
Identity = 38/178 (21.35%), Postives = 75/178 (42.13%), Query Frame = 0 

Query: 52  FLCCVCLDLLYKPIVLSCGHISCFWCVHKSMNGFRESHCPICRRPYYHFPTICEMLHLLI 111
           F C +CLDL  +P++  CGH+ C+ C+++ +       CP+C+          E+    +
Sbjct: 137 FDCNICLDLSKEPVLTCCGHLYCWPCLYQWLQISDAKECPVCKG---------EVTSKTV 196

Query: 112 LKMYPMA-YKRRQNQTLEEERKLGLFSPQYDSLACGSRAGEKMEHLEDSANGEMNANTKN 171
             +Y    +KR   ++L+ +  +   + + +SL    +       +E+      N   ++
Sbjct: 197 TPIYGRGNHKREIEESLDTKVPMRPHARRIESLRNTIQRSPFTIPMEEMIRRIQNRFDRD 256

Query: 172 DNVVAELILEENSEVVRSASVEILNSLGDLHGQKTQNQETVTVADVLCRACTQLLLRP 229
              V +    E SE V   +  ILN L    G +++  +    A  +  A   + L P
Sbjct: 257 STPVPDFSNREASERVNDRANSILNRLMTSRGVRSEQNQASAAAAAIVAASEDIDLNP 305

The following BLAST results are available for this feature:
BLAST of CmaCh08G000740 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LBL58.1e-9045.52E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana OX=3702 GN=PRT1 PE=2 SV... [more]
O957143.3e-0638.98E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2[more]
Q5D7I62.1e-0529.91Tripartite motif-containing protein 5 OS=Alouatta sara OX=121123 GN=TRIM5 PE=3 S... [more]
Q5A1M41.4e-0429.70Transcriptional regulator of yeast form adherence 3 OS=Candida albicans (strain ... [more]
B8B5U82.3e-0427.78Probable E3 ubiquitin-protein ligase BAH1-like 1 OS=Oryza sativa subsp. indica O... [more]
BLAST of CmaCh08G000740 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G24800.15.8e-9145.52proteolysis 1 [more]
AT3G58030.11.4e-0421.35RING/U-box superfamily protein [more]
AT3G58030.21.4e-0421.35RING/U-box superfamily protein [more]
AT3G58030.31.4e-0421.35RING/U-box superfamily protein [more]
AT3G58030.41.4e-0421.35RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 54..93
e-value: 2.0E-5
score: 34.0
coord: 218..254
e-value: 3.2E-5
score: 33.4
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 54..94
score: 11.412309
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 218..255
score: 10.409105
IPR000433Zinc finger, ZZ-typeSMARTSM00291zz_5coord: 325..378
e-value: 2.5E-4
score: 30.4
IPR000433Zinc finger, ZZ-typePFAMPF00569ZZcoord: 326..367
e-value: 1.2E-8
score: 34.6
IPR000433Zinc finger, ZZ-typePROSITEPS01357ZF_ZZ_1coord: 331..361
IPR000433Zinc finger, ZZ-typePROSITEPS50135ZF_ZZ_2coord: 325..380
score: 10.699951
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 28..161
e-value: 3.8E-14
score: 54.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 162..284
e-value: 1.0E-10
score: 43.2
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 53..97
e-value: 3.0E-8
score: 33.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 446..465
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..465
NoneNo IPR availablePANTHERPTHR15898UNCHARACTERIZEDcoord: 164..451
NoneNo IPR availablePANTHERPTHR15898UNCHARACTERIZEDcoord: 38..168
NoneNo IPR availablePANTHERPTHR15898:SF15E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKEcoord: 164..451
coord: 38..168
NoneNo IPR availableCDDcd16449RING-HCcoord: 54..93
e-value: 1.77223E-7
score: 45.5361
NoneNo IPR availableCDDcd02338ZZ_PCMF_likecoord: 329..385
e-value: 1.41256E-11
score: 57.3568
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 324..385
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 210..257
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 46..104
IPR043145Zinc finger, ZZ-type superfamilyGENE3D3.30.60.90coord: 320..385
e-value: 3.5E-18
score: 67.1
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 233..242

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh08G000740.1CmaCh08G000740.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
molecular_function GO:0061630 ubiquitin protein ligase activity
molecular_function GO:0008270 zinc ion binding