CmaCh08G000200 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G000200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Coiled-coil domain-containing protein SCD2
Location	Cma_Chr08: 117072 .. 126864 (+)
RNA-Seq Expression	CmaCh08G000200
Synteny	CmaCh08G000200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTCTTCTTCCTCTTTTCCAAAGCAAGATCCCGCATCCAAAAACTGAGTTGCCTCCGTTTCTCCTGCGATTCTTTACTCCCAAATTACGTCAACTCCAACAACTCCCAATTCTTCTTAGCGTCTCTTAGTATCTATTTCTGCTTCTCTGATCTCTTGCACCAAGCTGCTGCTGCTGCTGTAGATGGACGTGAAACGGACTGAGAGCCCGATTTATGCTCGCCAATGGAGCAGCGAATCAGGCAGCACCGGTGGCCCCGCATCACCGGCAATGTCGCCGGCGCGCGGCCATCATGTGCGATCCTCCTCCGTTTCTGGAACTTCCAACATTAAGCGCACTCAGAACTTCGCTGCAAAAGCCGCGGCCCAGCGGCTAGCGCAGGTTATGGCTTCTCAGACCGCCGATGACGACGAGGATGATCAGGATGACCTAGGATTTCGTTATGGTGCTCCTCCTCCTATTTCATTGTCCAGGAATGTTAATAATGGGAGCAGACTTGCTGTTCCTACTGGAAAAACCACCAGATCTCCCTCCCCTGGAGTAAGTCAAAATGCATTATGCTCGATTCTGATTGAGTTATAGTGTAGCTGAAGCTGTCTACTTTTTTCTTTTTTGGCTTCCTTGCACATTGCCTTCTGCCCCCGTTTCTGACTGAATTTTGCTTGAATTAGGTATGTCAACGTAAATGGTGATTAAGATCTGTTCTTAGTTACTTTGTATTTGCCTTTTTGGATTTTCATTTTACGAAATTGAGATTCACGGATCATTCCGTTTTAGAATTGAATGCATGTTTGCGTTAAATTATCAGGTCATCCTAATAAATGCTCGTTCGGTGTTTCCCATTTGTTCTAGAAATGCAATAGCTTTTTTTTCTTTTCTTTAATCATTTTTTTTTTTTTTTTTAGAATAAGACCACAGCTGATTACAGACGATTAATCGAATTTCCTCTTTTCGTTCTCTAATTAGTTAGCCCGGAACTTTTTAGAGGAAACTCCTTCAGTTCGTTCCACTTCCGCAGGAAGATCATCGATATCTCATATTTCACTGCCAGTGGCCCCACCCAAAACAACACTGAGGACGGCAACTTCTATGCCACCTCTAGATCCGCCTACTAATAAGCAAAGAGAAAAAAGGTAAATCTTTTTGGACTATAGCATACATTAGAAATTCAAATTTGTGGTTTGGACCGTATGCATACAATGCAAGTTACTTATCTGGTTTTAACACCGTGTTCTATCTTTTGCAGATCTGACATATGTTCTCTTTTCGGTTTTATATTGTTTGTTTCTGAAAAATAAATGGTCTTGTAAGATTTGTCTAGTTTCCTCAATATCTAGGACAAGGAATAATGTTTCTTTTTGGTTGTTACATGAAAACTTCCTTGATAGTTACCGAAGCTGTTGACTAGTTTGCTTGTCCTGTTCAAGTCAAGGATTTGTCAATTTGGGTTATGATTAAGAGAAGACGACTGTACTGTTAGAAACTTTAAAAATCTTGCTTACCCTTTCATATTGATGGCTGCCACATCTATGGATGTGTATGTAACTTACATTTTCCGATATTTTGTCCATTCCTGGTATCAGCTAACAAGAATGGGATAATCCTGTATATAGTAATTATTGTAGTATAGAATATAAGATCATGCATCTGATCAAAAAATTGGTGAACTGTTAATGGTATACTGCAGATTCTCATCAGATACGTTGCATTTTAATAATAAAGATTCAGGAGATCAGCAAGAAGCTTCTGCCCTTCGTGATGAAGTACGCCCATCGCATTATTGTTTCATATGTCTGAATCATATAATTGCTGTGTGACTGTAAAGCAGTATGTTTGTTACATTGCCCTTTTTCCAGTCTCCAAGTACTTAAAAGTTGTAAATTCTCTGTTCTGTAGCTTGATATTCTACAAGAGGAGAACGAGAACATTCTTGGGAAGGTGCTTATTTTTCAATTCTTTCTCTTTCACTGGGTTTGAGCATTTTTTTAAATACCTTTTGTGCTTAAATATGTATTTGGGTATTGTTTACAGCTCAGACTTGAGGAAACGAGATGTAAAGATGCACAGACAAGAGTTAGGGAACTTGAGAAGCAGGTAATGGATAGATCATTTCAATATGATTTTCACTAGTTGTGTGTGTAATTTACTTTGTTAGGAAAATCTTTTCTCAGCAGCAATTTGAATATCTAATGCGATTTTGGATCTGTTTAACAGCCTCAAATATAGCAATTCTTAAGAAAGAAAGCAAATGAGAAAGTTAGTGTAGTCAACAGTTAAGAAAGAAAAGGAAATGAGAAATTGTTAATATCCTGTCATGTGGTGACAATATAAAAGGAGTATAAGGATTTGAATACAAATAAAAAGCTTAGAGGATGGTATGCGTAAGAAAATGAGTAAAGCATTGAGGTGTTAAAAGGTGCCAAGATCTGCTGGAGACTTCCACCCAGTTGGTTATCAGAAGTGATAATTCTCAACTTCATTGAAGAACTGCGTTGCCCCCGGAAATAAACAAGTGCTAAATTTTAGATAAGGGAATGAACCGAAACGAAAGAACTAAATGGACGAAAGAGGAAATAAGAACTATGGACTTCTTTGAGGTTCAACAAAGTGTGAGCTTGTGTGAAGTTGCTTTACCTGATAGGTTAGATGTCACAGTCAGCTTGTGAGCATTAGAGCCTTGGCAAAGGTCTTAATGGAAGAAGTTTTCCACGCTGAATTACTTACTTTTGTCTTTACCGTTTGCTTTAATGATCCGATTTGTGTCTGAAAGTTTAATTCCACTTTTGTTCTACGGTGACAAATACATGGGACTGATGTGTTTCTAAGTTATCAGGTTGCTGCTCTGGGAGAAGGTGTTTCTTTAGAAGCTAAACTTTTGAGCAGGTCAATGCAAGTTTAACTTAATTTCCTTGGATTATTTTCTCTCTTGATGTCTGTATGATATAACATCCCGTGCTATTAATAATGCAGGAAGGAAGCAGCATTACGTCAGAGAGAGGTATTTACTGCATCGGATGTGTATGACTTATGATCAAGTACCTAGGGAAGCTTAGTTCTAACCATAGAAATATATATACTTTTTTGAACAAGAAACCAAACTTGTCTTTGACAAAAATGAAAAGAGACTACCATCGAAGTATTTATTGCAGTAAGATTGCTAGGACACTGACGTTTTTTTCAAAGCTGCCTTGTTAGATTTTACTGATCAAATGGTTTATGATTGCTAGGAAATTGTTTGAAAAATGATGGACGGTATTGTAAATATATGACTATTGGTTCCTATGCATGAAACAGCAAAGAAAAAGCATTATTTCTGATGGTACTTTCATTTTTACAGGCTGCACTTAAAGAAGCAAAACAATCAAAGGATGGGGGGGATAATGAAATTGAATCCCTTAAATCTGAAGTTCAGGTTATATTCCTTGCATCTTATGGCGTCCATAATATTAAACATAATTATTTTTTACAGATTTAAAATAATGCTACCCATAACCATTTCCTTTTGGTCTCTTATTTCTAACTTGAATTAGAAATCCAAAGAGGAGACTGCGAATGTTGTTCAACACCTCCATGGAGTTGAACATGATGTCAAGGCTCTACGATCTATGACGCAAAGAATGATTTTGACTCAGAAAGAGATGGTTTGTACTTGCTTTACTTGAAGTAGACTTTCATGTCAGTTTGCATTAGAAAATGATTTACATTTCTTATTTCAGGAAGAAGTAGTTCTTAAAAGGTGTTGGCTTGCTCGCTACTGGGGCCTAGCAGCAAAATATGGTAAATCAGAGGACACGCCTCTTTCAACTACTTTGAATTCTACATAGTTTTTTCTTTTTCATATGCTAGTTGAACCTAACTGAAATGCCATGTGGCTCATTTTTTGGCATTATATCATCCCGTTGTTGGAAATATAAATATCCTGAAAATTTTTAATCAGCTGCAAAATTTCCTTAAACCGCTATCTTGTTTTGAACTATTGTAGAACATCAGCCTCCCTGTATGTGCGAACCATTGTACTTGTTTTTTCTTTTTGATCTTTGGTGACCGATAGTTCCTTACATCTCATTAATCTTTCTTTTTACCAAATCTATTTTCTTGCTTTTCAGGCATTTGTTTAGATATTGCTGTGACAAAGTACGAACACTGGTCATCATTAGCTCCACTCCCATTTGAGATTGTCATTTCTGCAGGGCAAAAGGCTAAGGAGGAATTTTCTCAAAAAGGCAAGTTACTTTTTGGTGATTGCGAGTTATTTATTGATCTTCCTGCCATTGCCTGTTGATGATTATTGGGAGTGAGTCCGACATTGGTTAATTTTGTAGAAGATCATGGGTTTATAAGTGAGGAATACTATCTCCATTGGAATGAGGTCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTTCTAACATGGTATCAGAGCCATGCTCTAAACTTAACCATGTCAATAGAATTCTCAAATATCGAACAAAGAATTGTGAGTCTCGAAGGTGTAGTCAAAAGTGACTAAAGTGTCGAACAAAGGGTGTACTTTGTTCGAGGGCTCCAGAGAAAGGAGTCAAGTCTCAATTAAGGGAAGGCTATTCGAGAGCTCCATAAGCCTCGAGGGAGGCTTATAGTGTACTTTGTTCGAGGGGAGGATTGTTGAGGATTATTGGGAGTGAGTCCCACATTGGTTAATTTAGTGGAAGATCATGAGTTTACAAGTGAGGCCTTTTGGGGAAGCCCAAAGCAAAGCCATGAGAACTTATGCTCAAAGTGGACAATATCATACCATTGTGGAGAGTCGTGATTTCTAACATTGCCCACCACAACTATTGGCTCACTTTTTTTTTTTTTTTGGTGGGTGCATCATCTAAATCAATATCATGTCATCCCATCCCATAGTGCCATTTACAGCACCAGGAGACCTGGACACTGAGCAAAGGAGCACACTTGTTCCTGATATAAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTATCTGTTGAAATGGGATTGAAAGAACTTGCTTCATTGAAGGTTTCTTTCTAATACACTACTCTCTTTCTCCTTTTTTTTGGGTGGGGGTACCTCGGGAACTTCAATCATCAAAGTATAAGTTTCTGTTTTGTTCTGTTTTCTTTTATTCGCTAAATTATGTTCTTCGATATCGTTTTCATTTTGTCATTGCTACTACTGTTTAAATTAAGTCTAAGCTTGCCTTGTAAAGCAAAGGTGGAGGAGGCCATTGTGCTTGCTTTGGCCCAACAGAGGCGTCCAAATTCTGCGCGACAATCTCTGTCAGGTGTGAATTTTTAGTATGACATTGATTTTAATATTTTATCATACTCTTATAGCTTCACTAATGGGTAAAATCGATGAGTCTTTTACAATGCTTTAACTAGATTTTTCATTTAGGGGTGTTTGGGGTGATGAGTTGAGTTATGAAGTTTGGAGTTATTTAATTTGTGGGTCTGCTTATGGAGTTAAACAATCTGTGTTTGACGTGTGTTGTTTAGTCTGGACTAAGGAAGTCGGCATTTAGGGTGCAGAATTGTTTAGTCTGGATTTAAAAAGTCTGTTTGGGGTGCAAAGTTTATTAACATAGAGTTTTGAAGTCTGTGTATGCTTGCTGTTAATTTTTTTTCCTACATTTTTTAAGACATTTGTTCTAATGTCCTAAAACGTGTGTGCATATATATATAGTTAAAAAATTAATTGCATAACAATGTCTGATGTGAGGAAAATCTTTTGGTCTAATCTTAACTTCAACTTTCCTGAATATCTATTCCCTATGCCTTCCAAAAATTTAACATTTTATGTTAAACTTAGTGCCATGTTGTAACTCCATCTTTTATGGATGACTTGTTTATCTATGATTTCAAAGCCTAACGATTATATTTGATTTATTTTCTTGTAATTTTAAAATACCACAAATTTTAACAACATAATGTGAATATTTCATCATTGTAATATTCACTAATGAAACACACCTTTAGCATCTTTATAGTTAAGCTTTGCTTTTATTGTAATTCCATTTTTTTTTTTTTTTGTTTGTTTGTATGTGGGATATTGAGTGATTTCAAATTCTAACGAATTTTAAATGAACTTTGTTACTTATTATCAATGAAATTGAATGACATTTTTCCTATAATTTTTTTTTTCTCAAAATAGTCATATTTTGCAAGATTTCTTAGAATTTTGAAGTAAGTTACTTAACATCAATGTTGAAATGTCGATGCAGATGAAAATATCCATAAAATGTCAATGTCTATGGATAATTCTGAAAAAATTATGAAACAAAAAATTAGGAAAATATATATTTAAATTAATAAAATACCTATTATTAACATGAGAGAGGGAGATGGAGAGAGAAAAAAAGAAGAGGTTCCTTGATAAATAGTGAACACTGAAGTTGTTGAACAGTGGACTGTTTGGAGTAAATAGATCAGGGGTAAAAAACTTAGTAGGCCAAACATGGAGTTGTTTATTTCCTTTATTTTATATTTAGGTATAATTGTTTATTTGTATGAATTAAAAGCTTGCCCCTTCACGAAAAAGCTTTTAGCCTCATCCCTGCTTGGGACCTCATGCCATCTTTAGGTTGATGTTGCTAAGTTTTCTGCGCTGAGTTGTCTAACTTGTCTTGCTTGAGTATAAGCTTGCTCCTTGTCACCCCTCCATTTTGAATTCCCCCTCCCATAAACACTGCTGTTTCTCATCTACTAAAATAAACTGCAGGGTTTTTTTGTTACTTTTGTCTAATTAAACATTCTCAATTTAAATCAATGCCTCTTTCGAGAGTCATAATTGCATGCCAATTCTCATGAAGACAAATTATTCTCATTGCTCGAGTGCAGGGACTGCTTAATTTTGCATGTGGATCGTTTGAGTGTCTTCAATTTCTATTTCGCACATATCTCATGTCATTTATCAGTTTTTTTTTGGTATCCATAATGCTATTGCAAATGCCACTCAGTCAATTGCAGCCGCAATTTTTTCCCCTTATTTCATGAGCATTCCAACCATAAATAATTTTAGCTTTCTGAATGCCTATTGATAGATAATCTGATAAGAAACGTAGCTAATTTTATTATCTTAGTGAAACAATTTTTTGATTTTTGATTCTGTACGGTAACATAGAAGAATTATGTTATATCTGATTCCACCATGGTTGCATGCGACTTTAAAATACTAATTCTCGCATTTGGTAATATTTTTTGCTGAATACTTTCAACTCATTTTAATGTTGCAGATATCAAATCGCCAGTTGATCCCAAGTTTATGGAGGCTTTTGGTATGTCATTTTTGTTGCTGTTCCGTTAGTTCTCAAATTTAAAAGGGTTAAAACTTGATAGACTCGCTCATTAGATCGCTCCCATAAATTTGATAATAGGCTGTCAGGTATCTAAATACACACACGTGCGCGCACACACAAAAAAAAAAAAACGTAAAAACATAAAAACATAATATACTAATATATTACAAAATACTAAAATATTGTAATATTAAACAGTAACTATAGCCTTTGGAGAGGGTCTATTTCTCCCAAGTCCCACAATTGACACAACACTAATATGATCCACACCCTCTAAAGTCCTAACACTTATTTATAATCAAGACATCCCTATCTATTTCCACTATGCTCCTTACTGATATATTACTAATCCCAACAATTTCATTTTGGTACTCTCACATTATCCTATTCTTCAAAGCAACCTTGTCCTCTTAGTGTGTTTTAGAAGATACAATCCAAATAAAAAGAAAAAATGGCAACGATCAAAATAATACTCTTTTTTTAATTTTAATTTTTTATTTTTTATTTTGAATACAAAAACGAAGAAAACATTCTTCAGGAAACGAAAATAAGCATTCATTAAAACAAAGCCCAGCTGGTTTAAATTCACTTTCTGCATTTTGCTATAAATATTGAGTTTTGCAATACTTGTTCACACAAATTTAGGATTTGTATAATGTTTTTGATTAAAAATTGAGGCGGATGCTTTATACCACTTCGAGGCTTGCACCTCGCTTCAAGAGGAAAAGACTCAAGTATGCCTTAAGCCTTTTAAAACATTTGATGACACAAATTTATTAGGTATCTGAACACAGAAAAACAAAAGATACTAATATATTGCATTATCGAAGACAAACAACAATATAACTATAGCCCTTCGAGAGGGCTCTCTCACCCAGGTCTCACAAGGGATACACCACTAAAATGATACACATCCTCTAAGGTCCCTAGCACTTCTATTTATAACTTAGACATCTCTAACTATTTACCACCATTGATATACTACTAATCTCCACACATCTTATTCTAGTATTTTAATGACTGCTTTTCATTTCCATGAGATGCTTAGACTTGAATGCTTTTAATTTTAAGCTTGGTTGTTTAATTTTGATTTATGAAACAATAGTTGAGCTTAAGCTTTCTATATACTCTTCTAATGCCCCAAATTTTAGGAAAATATATTTTTTTTAATTGTTTGGAGATTAAATTGAAATCGATAGAATTGAAGTTGTTGGAGATCTTACTTGAGTAAATTAGATTTAATAAGATTATATGAAGATAATCAGTGTTTTTGTTTTATTTCAGAATTGAGCCCAGAGGAATCTGAAGATGTTCTTTTCAAAGAGGTACTAATTCAGTCTCTTTTGTATAACCTATTTTTCCGTTGCATGACACATATAAGTGGTATTTTTGAATGGTTAGAGTCGTTAGACTATGTTGGTTGGTGGTAATATTTTCTCTCTGAAAAATAAATGCCGAGAACTATTTAACGCAAGTTAGTACATTGCTATCCCTGTTAGAATATTCTTTCATGGCAAACCAACGCCCATCATACATTCACGTGGCTGTCACTTGAGAGCAACTCGCTGTGACCATTGTCTGGTCAGAGCACTTTTGTTCACTAGTACTGAGTTCTCTTTCGCAAGCTACTTGATTAACGAGTGGAACTGCTATTAACTTAAGATAGGTTTACGCTGAGCTACCTAACAACAGAATAAAAAGTGGCAAATAATTTCCATATTTTTCTCTTCAATTTCTGTTTGACACGCTTATGTCATAAACGTTCTGATTATACATGTGATACATTCTTGGCATCCAGGCATGGCTTACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATCGAAGAGGATATTGCAAAAGAACGACTTCAATTCTGGATCAGTCGCAGTGCTCACTCTCCTTCATCTCATGATGCAGTTGAAGGTAAGTTTTGATGAGCTCAATGACTTAACGTTGGAATAGATTTATATTATGTTAACTGGAGAATTTTGTAACGTACTGCTGCATAATATCCTATACTTGCACTCCTTTCGTTTTCTTACCTTCCTCTTTTTCTTTTACTGTGTGTGTGTGAACGCCAATTTTCAGTTGAGCAAGGCCTCATAGAGCTTAGGAAGTTGGGGATTGAGCGTAGAATGTGGGAAGCATCACGTAAAGAGAATGCTTGAAGAGCTCGACCCAATGACAGCCTTGGATAATGCATCATTCTGATTCCGAGGACTCGTTTTTCCAATTATGATATGTTGTGGTCCTTTTCTCCAACACATGGGAATAGCAGTTGTCTATCTTTTTGGATGGGGGCTGGGGAGGGGTCTCCTCTCATGCTCTATCTATGTTGATGTACCTTCTTTCTCCTAATATAATATATATATCACATGCACTGAAACCACTGATATGGAATTTACTTTCTGCATTTTAGGGGGAAAAAAATCACTTCCT

mRNA sequence

TGTCTTCTTCCTCTTTTCCAAAGCAAGATCCCGCATCCAAAAACTGAGTTGCCTCCGTTTCTCCTGCGATTCTTTACTCCCAAATTACGTCAACTCCAACAACTCCCAATTCTTCTTAGCGTCTCTTAGTATCTATTTCTGCTTCTCTGATCTCTTGCACCAAGCTGCTGCTGCTGCTGTAGATGGACGTGAAACGGACTGAGAGCCCGATTTATGCTCGCCAATGGAGCAGCGAATCAGGCAGCACCGGTGGCCCCGCATCACCGGCAATGTCGCCGGCGCGCGGCCATCATGTGCGATCCTCCTCCGTTTCTGGAACTTCCAACATTAAGCGCACTCAGAACTTCGCTGCAAAAGCCGCGGCCCAGCGGCTAGCGCAGGTTATGGCTTCTCAGACCGCCGATGACGACGAGGATGATCAGGATGACCTAGGATTTCGTTATGGTGCTCCTCCTCCTATTTCATTGTCCAGGAATGTTAATAATGGGAGCAGACTTGCTGTTCCTACTGGAAAAACCACCAGATCTCCCTCCCCTGGATTAGCCCGGAACTTTTTAGAGGAAACTCCTTCAGTTCGTTCCACTTCCGCAGGAAGATCATCGATATCTCATATTTCACTGCCAGTGGCCCCACCCAAAACAACACTGAGGACGGCAACTTCTATGCCACCTCTAGATCCGCCTACTAATAAGCAAAGAGAAAAAAGATTCTCATCAGATACGTTGCATTTTAATAATAAAGATTCAGGAGATCAGCAAGAAGCTTCTGCCCTTCGTGATGAACTTGATATTCTACAAGAGGAGAACGAGAACATTCTTGGGAAGCTCAGACTTGAGGAAACGAGATGTAAAGATGCACAGACAAGAGTTAGGGAACTTGAGAAGCAGGTTGCTGCTCTGGGAGAAGGTGTTTCTTTAGAAGCTAAACTTTTGAGCAGGAAGGAAGCAGCATTACGTCAGAGAGAGGCTGCACTTAAAGAAGCAAAACAATCAAAGGATGGGGGGGATAATGAAATTGAATCCCTTAAATCTGAAGTTCAGAAATCCAAAGAGGAGACTGCGAATGTTGTTCAACACCTCCATGGAGTTGAACATGATGTCAAGGCTCTACGATCTATGACGCAAAGAATGATTTTGACTCAGAAAGAGATGGAAGAAGTAGTTCTTAAAAGGTGTTGGCTTGCTCGCTACTGGGGCCTAGCAGCAAAATATGGCATTTGTTTAGATATTGCTGTGACAAAGTACGAACACTGGTCATCATTAGCTCCACTCCCATTTGAGATTGTCATTTCTGCAGGGCAAAAGGCTAAGGAGGAATTTTCTCAAAAAGTGCCATTTACAGCACCAGGAGACCTGGACACTGAGCAAAGGAGCACACTTGTTCCTGATATAAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTATCTGTTGAAATGGGATTGAAAGAACTTGCTTCATTGAAGGTGGAGGAGGCCATTGTGCTTGCTTTGGCCCAACAGAGGCGTCCAAATTCTGCGCGACAATCTCTGTCAGATATCAAATCGCCAGTTGATCCCAAGTTTATGGAGGCTTTTGAATTGAGCCCAGAGGAATCTGAAGATGTTCTTTTCAAAGAGGCATGGCTTACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATCGAAGAGGATATTGCAAAAGAACGACTTCAATTCTGGATCAGTCGCAGTGCTCACTCTCCTTCATCTCATGATGCAGTTGAAGTTGAGCAAGGCCTCATAGAGCTTAGGAAGTTGGGGATTGAGCGTAGAATGTGGGAAGCATCACGTAAAGAGAATGCTTGAAGAGCTCGACCCAATGACAGCCTTGGATAATGCATCATTCTGATTCCGAGGACTCGTTTTTCCAATTATGATATGTTGTGGTCCTTTTCTCCAACACATGGGAATAGCAGTTGTCTATCTTTTTGGATGGGGGCTGGGGAGGGGTCTCCTCTCATGCTCTATCTATGTTGATGTACCTTCTTTCTCCTAATATAATATATATATCACATGCACTGAAACCACTGATATGGAATTTACTTTCTGCATTTTAGGGGGAAAAAAATCACTTCCT

Coding sequence (CDS)

ATGGACGTGAAACGGACTGAGAGCCCGATTTATGCTCGCCAATGGAGCAGCGAATCAGGCAGCACCGGTGGCCCCGCATCACCGGCAATGTCGCCGGCGCGCGGCCATCATGTGCGATCCTCCTCCGTTTCTGGAACTTCCAACATTAAGCGCACTCAGAACTTCGCTGCAAAAGCCGCGGCCCAGCGGCTAGCGCAGGTTATGGCTTCTCAGACCGCCGATGACGACGAGGATGATCAGGATGACCTAGGATTTCGTTATGGTGCTCCTCCTCCTATTTCATTGTCCAGGAATGTTAATAATGGGAGCAGACTTGCTGTTCCTACTGGAAAAACCACCAGATCTCCCTCCCCTGGATTAGCCCGGAACTTTTTAGAGGAAACTCCTTCAGTTCGTTCCACTTCCGCAGGAAGATCATCGATATCTCATATTTCACTGCCAGTGGCCCCACCCAAAACAACACTGAGGACGGCAACTTCTATGCCACCTCTAGATCCGCCTACTAATAAGCAAAGAGAAAAAAGATTCTCATCAGATACGTTGCATTTTAATAATAAAGATTCAGGAGATCAGCAAGAAGCTTCTGCCCTTCGTGATGAACTTGATATTCTACAAGAGGAGAACGAGAACATTCTTGGGAAGCTCAGACTTGAGGAAACGAGATGTAAAGATGCACAGACAAGAGTTAGGGAACTTGAGAAGCAGGTTGCTGCTCTGGGAGAAGGTGTTTCTTTAGAAGCTAAACTTTTGAGCAGGAAGGAAGCAGCATTACGTCAGAGAGAGGCTGCACTTAAAGAAGCAAAACAATCAAAGGATGGGGGGGATAATGAAATTGAATCCCTTAAATCTGAAGTTCAGAAATCCAAAGAGGAGACTGCGAATGTTGTTCAACACCTCCATGGAGTTGAACATGATGTCAAGGCTCTACGATCTATGACGCAAAGAATGATTTTGACTCAGAAAGAGATGGAAGAAGTAGTTCTTAAAAGGTGTTGGCTTGCTCGCTACTGGGGCCTAGCAGCAAAATATGGCATTTGTTTAGATATTGCTGTGACAAAGTACGAACACTGGTCATCATTAGCTCCACTCCCATTTGAGATTGTCATTTCTGCAGGGCAAAAGGCTAAGGAGGAATTTTCTCAAAAAGTGCCATTTACAGCACCAGGAGACCTGGACACTGAGCAAAGGAGCACACTTGTTCCTGATATAAGTGATCTAACTGGAGAAGGAAATATTGAAAGTATGCTATCTGTTGAAATGGGATTGAAAGAACTTGCTTCATTGAAGGTGGAGGAGGCCATTGTGCTTGCTTTGGCCCAACAGAGGCGTCCAAATTCTGCGCGACAATCTCTGTCAGATATCAAATCGCCAGTTGATCCCAAGTTTATGGAGGCTTTTGAATTGAGCCCAGAGGAATCTGAAGATGTTCTTTTCAAAGAGGCATGGCTTACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATCGAAGAGGATATTGCAAAAGAACGACTTCAATTCTGGATCAGTCGCAGTGCTCACTCTCCTTCATCTCATGATGCAGTTGAAGTTGAGCAAGGCCTCATAGAGCTTAGGAAGTTGGGGATTGAGCGTAGAATGTGGGAAGCATCACGTAAAGAGAATGCTTGA

Protein sequence

MDVKRTESPIYARQWSSESGSTGGPASPAMSPARGHHVRSSSVSGTSNIKRTQNFAAKAAAQRLAQVMASQTADDDEDDQDDLGFRYGAPPPISLSRNVNNGSRLAVPTGKTTRSPSPGLARNFLEETPSVRSTSAGRSSISHISLPVAPPKTTLRTATSMPPLDPPTNKQREKRFSSDTLHFNNKDSGDQQEASALRDELDILQEENENILGKLRLEETRCKDAQTRVRELEKQVAALGEGVSLEAKLLSRKEAALRQREAALKEAKQSKDGGDNEIESLKSEVQKSKEETANVVQHLHGVEHDVKALRSMTQRMILTQKEMEEVVLKRCWLARYWGLAAKYGICLDIAVTKYEHWSSLAPLPFEIVISAGQKAKEEFSQKVPFTAPGDLDTEQRSTLVPDISDLTGEGNIESMLSVEMGLKELASLKVEEAIVLALAQQRRPNSARQSLSDIKSPVDPKFMEAFELSPEESEDVLFKEAWLTYFWRRAKAHGIEEDIAKERLQFWISRSAHSPSSHDAVEVEQGLIELRKLGIERRMWEASRKENA

Homology

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BLAST of CmaCh08G000200 vs. ExPASy Swiss-Prot
Match: Q8RWD5 (Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana OX=3702 GN=SCD2 PE=1 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 7.7e-156
Identity = 330/572 (57.69%), Postives = 403/572 (70.45%), Query Frame = 0


Query: 1   MDVKRTESPIYARQWSSESGSTGGPASPAMSPARGHHVRSSSVSGTSNIKRTQNFAAKAA 60
           MD +R  SP+Y RQWS  S ST    SPAMSPA  H  +   + G S +KRTQN AAKAA
Sbjct: 1   MDRRRAGSPVYGRQWSESSNSTEA-TSPAMSPA--HRKQLGGIGGFSTVKRTQNVAAKAA 60

Query: 61  AQRLAQVMASQTAD----DDEDDQDDLGFRYG---------APPPI-SLSRNVNNGSR-- 120
           AQRLA+VMA Q  D    DDED+ +DL  R+          AP  I S   N +NG+   
Sbjct: 61  AQRLAKVMALQNKDNGDEDDEDEDEDLSLRFASASLKPARHAPSSISSTGSNSSNGNNNL 120

Query: 121 LAVPTGKTTRSPSPGLARNFLEETP-SVRSTSAGRSSISHIS-----LP--VAPPKTTLR 180
            AV     TRSPSP L RNF E+ P SVRS SAGR S+S  S     +P  + P + +++
Sbjct: 121 PAVSFAPRTRSPSPALGRNFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLMPPSRVSVK 180

Query: 181 TATSMPPLDPPTNKQREKRFSSDTLHFNNKDSGDQQEASALRDELDILQEENENILGKLR 240
           T  S+PPLDPPT + R+KRF +D    N+K+ GDQ+EASALRDELD+LQEENEN+L KLR
Sbjct: 181 TPVSIPPLDPPT-RSRDKRFFADVPSVNSKEKGDQREASALRDELDMLQEENENVLEKLR 240

Query: 241 LEETRCKDAQTRVRELEKQVAALGEGVSLEAKLLSRKEAALRQREAALKEAKQSKDGGDN 300
             E +  +A+ R +ELEKQVA+LGEGVSLEAKLLSRKEAALRQREAAL  AKQ K G D 
Sbjct: 241 RAEEKRVEAEARAKELEKQVASLGEGVSLEAKLLSRKEAALRQREAALNVAKQKKSGKDE 300

Query: 301 EIESLKSEVQKSKEETANVVQHLHGVEHDVKALRSMTQRMILTQKEMEEVVLKRCWLARY 360
           EI SL+SE++  K+E     + L   E + K+LR+MTQRMILTQ EMEEVVLKRCWLARY
Sbjct: 301 EIVSLRSELENLKDEATTAAERLQEAESEAKSLRTMTQRMILTQDEMEEVVLKRCWLARY 360

Query: 361 WGLAAKYGICLDIAVTKYEHWSSLAPLPFEIVISAGQKAKEEFSQKVPFTAPGDLDTEQR 420
           WGLA ++GIC DIA ++ EHWS LAPLPFE+V SA QKAKE            D     R
Sbjct: 361 WGLAVQHGICADIAPSRQEHWSKLAPLPFELVTSAAQKAKE---------LSWDKGGNDR 420

Query: 421 STLVPDISDLTGEGNIESMLSVEMGLKELASLKVEEAIVLALAQQRRPNSARQSLSDIKS 480
           S    D+SDLTGEGNIESMLSVEMGL+ELASLKVE+A+VL  AQQR+ +  R ++SD K 
Sbjct: 421 SKAARDLSDLTGEGNIESMLSVEMGLRELASLKVEDAVVLIFAQQRKLSLVRHTVSDSKG 480

Query: 481 PVDPKFMEAFELSPEESEDVLFKEAWLTYFWRRAKAHGIEEDIAKERLQFWISRSA--HS 540
             + +F++A+EL   E EDV FK+AWL YFW RAK HG+E+DIA+ER+Q WISRS+    
Sbjct: 481 HGESRFIDAYELGEAEQEDVAFKQAWLMYFWGRAKLHGVEDDIAEERVQLWISRSSGKSQ 540

Query: 541 PSSHDAVEVEQGLIELRKLGIERRMWEASRKE 547
            +SHDA++VE+GLIELRKLGIE+++WEASR+E
Sbjct: 541 TTSHDALDVERGLIELRKLGIEQQLWEASRRE 559

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BLAST of CmaCh08G000200 vs. TAIR 10
Match: AT5G13260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 607.1 bits (1564), Expect = 1.4e-173
Identity = 348/551 (63.16%), Postives = 411/551 (74.59%), Query Frame = 0


Query: 1   MDVKRTESPIYARQWSSESGSTGGPASPAMSPARGHHVRSSSVSGTSNIKRTQNFAAKAA 60
           M+  RTESP Y RQWS +SG+T   A    SPAR HH RSSSV+  SN+KR QN AAKAA
Sbjct: 1   MERARTESPSYFRQWSGDSGTTNAAAVAPSSPARHHHARSSSVTNMSNVKRAQNVAAKAA 60

Query: 61  AQRLAQVMASQTADDDEDDQ-------DDLGFRYGAPPPISLSRNVNNGSRLAVPTGKTT 120
           AQRLA+VMASQT +DD+DD        DDLGFRYGAPPP+S +RN ++      P   + 
Sbjct: 61  AQRLAKVMASQTNNDDDDDDDDDEVGGDDLGFRYGAPPPLSFTRNPSSTIAKPKPVASSA 120

Query: 121 RSPSPGLARNFLEETPSVRSTSAGRSSISHISLPVAPPKTTLRTATSMPPLDPPTNKQRE 180
             P P ++R+    +P+     + R+S      PV P K   +T   +P   P T    E
Sbjct: 121 VVPPPKISRS---SSPANSPAVSVRAS----QPPVPPSKLRNQTTNPLPVATPKT----E 180

Query: 181 KRFSSDTLHFNNKDSGDQQEASALRDELDILQEENENILGKLRLEETRCKDAQTRVRELE 240
           KR  +D  HFN KDS DQ EASALRDELD+LQEEN++IL KLRLE+ +CK+A+ RVRELE
Sbjct: 181 KRVLADIGHFNGKDSKDQHEASALRDELDMLQEENDSILEKLRLEDEKCKEAEARVRELE 240

Query: 241 KQVAALGEGVSLEAKLLSRKEAALRQREAALKEAKQSKDGGDNEIESLKSEVQKSKEETA 300
           KQV +LGEGVSLEAKLLSRKEAALRQREAALK+A+Q++DG + E  +L+S+V+ +K ETA
Sbjct: 241 KQVTSLGEGVSLEAKLLSRKEAALRQREAALKDARQNRDGTNRETTALRSQVETAKLETA 300

Query: 301 NVVQHLHGVEHDVKALRSMTQRMILTQKEMEEVVLKRCWLARYWGLAAKYGICLDIAVTK 360
            +V  L G E +V  LR+MT RMILTQKEMEEVVLKRCWLARYWGLA++YGIC DIA +K
Sbjct: 301 AIVAQLQGAESEVNGLRTMTHRMILTQKEMEEVVLKRCWLARYWGLASRYGICSDIATSK 360

Query: 361 YEHWSSLAPLPFEIVISAGQKAKEEFSQKVPFTAPGDLDTEQRSTLVPDISDLTGEGNIE 420
           YE+WSSLAPLPFEIV+SAGQKAKEE  +K         + E+RS LV DI+DLTGEGNIE
Sbjct: 361 YEYWSSLAPLPFEIVLSAGQKAKEESWEK------ESEENEKRSQLVQDINDLTGEGNIE 420

Query: 421 SMLSVEMGLKELASLKVEEAIVLALAQQRRPNSARQSLSDIKSPVDPKFMEAFELSPEES 480
           SMLSVEMGLKEL SLKVE AI + LAQ R  N+ R S  ++KSP  PK  E  ELS EES
Sbjct: 421 SMLSVEMGLKELTSLKVEVAITITLAQLRLANTTRLSDIELKSPGGPKITETLELSQEES 480

Query: 481 EDVLFKEAWLTYFWRRAKAHGIEEDIAKERLQFWISRSAHSPSSHDAVEVEQGLIELRKL 540
           EDVLFKEAWLTYFWRRA++ GIE D A+ERL+FWISRSAHSPSSHDA+EVEQGL ELRKL
Sbjct: 481 EDVLFKEAWLTYFWRRAQSLGIEVDTARERLRFWISRSAHSPSSHDAMEVEQGLTELRKL 534

Query: 541 GIERRMWEASR 545
            IERR+WEASR
Sbjct: 541 RIERRLWEASR 534

[Close]

BLAST of CmaCh08G000200 vs. TAIR 10
Match: AT3G48860.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12429 Blast hits to 9751 proteins in 897 species: Archae - 180; Bacteria - 1190; Metazoa - 6552; Fungi - 1361; Plants - 886; Viruses - 50; Other Eukaryotes - 2210 (source: NCBI BLink). )

HSP 1 Score: 552.0 bits (1421), Expect = 5.5e-157
Identity = 330/572 (57.69%), Postives = 403/572 (70.45%), Query Frame = 0


Query: 1   MDVKRTESPIYARQWSSESGSTGGPASPAMSPARGHHVRSSSVSGTSNIKRTQNFAAKAA 60
           MD +R  SP+Y RQWS  S ST    SPAMSPA  H  +   + G S +KRTQN AAKAA
Sbjct: 1   MDRRRAGSPVYGRQWSESSNSTEA-TSPAMSPA--HRKQLGGIGGFSTVKRTQNVAAKAA 60

Query: 61  AQRLAQVMASQTAD----DDEDDQDDLGFRYG---------APPPI-SLSRNVNNGSR-- 120
           AQRLA+VMA Q  D    DDED+ +DL  R+          AP  I S   N +NG+   
Sbjct: 61  AQRLAKVMALQNKDNGDEDDEDEDEDLSLRFASASLKPARHAPSSISSTGSNSSNGNNNL 120

Query: 121 LAVPTGKTTRSPSPGLARNFLEETP-SVRSTSAGRSSISHIS-----LP--VAPPKTTLR 180
            AV     TRSPSP L RNF E+ P SVRS SAGR S+S  S     +P  + P + +++
Sbjct: 121 PAVSFAPRTRSPSPALGRNFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLMPPSRVSVK 180

Query: 181 TATSMPPLDPPTNKQREKRFSSDTLHFNNKDSGDQQEASALRDELDILQEENENILGKLR 240
           T  S+PPLDPPT + R+KRF +D    N+K+ GDQ+EASALRDELD+LQEENEN+L KLR
Sbjct: 181 TPVSIPPLDPPT-RSRDKRFFADVPSVNSKEKGDQREASALRDELDMLQEENENVLEKLR 240

Query: 241 LEETRCKDAQTRVRELEKQVAALGEGVSLEAKLLSRKEAALRQREAALKEAKQSKDGGDN 300
             E +  +A+ R +ELEKQVA+LGEGVSLEAKLLSRKEAALRQREAAL  AKQ K G D 
Sbjct: 241 RAEEKRVEAEARAKELEKQVASLGEGVSLEAKLLSRKEAALRQREAALNVAKQKKSGKDE 300

Query: 301 EIESLKSEVQKSKEETANVVQHLHGVEHDVKALRSMTQRMILTQKEMEEVVLKRCWLARY 360
           EI SL+SE++  K+E     + L   E + K+LR+MTQRMILTQ EMEEVVLKRCWLARY
Sbjct: 301 EIVSLRSELENLKDEATTAAERLQEAESEAKSLRTMTQRMILTQDEMEEVVLKRCWLARY 360

Query: 361 WGLAAKYGICLDIAVTKYEHWSSLAPLPFEIVISAGQKAKEEFSQKVPFTAPGDLDTEQR 420
           WGLA ++GIC DIA ++ EHWS LAPLPFE+V SA QKAKE            D     R
Sbjct: 361 WGLAVQHGICADIAPSRQEHWSKLAPLPFELVTSAAQKAKE---------LSWDKGGNDR 420

Query: 421 STLVPDISDLTGEGNIESMLSVEMGLKELASLKVEEAIVLALAQQRRPNSARQSLSDIKS 480
           S    D+SDLTGEGNIESMLSVEMGL+ELASLKVE+A+VL  AQQR+ +  R ++SD K 
Sbjct: 421 SKAARDLSDLTGEGNIESMLSVEMGLRELASLKVEDAVVLIFAQQRKLSLVRHTVSDSKG 480

Query: 481 PVDPKFMEAFELSPEESEDVLFKEAWLTYFWRRAKAHGIEEDIAKERLQFWISRSA--HS 540
             + +F++A+EL   E EDV FK+AWL YFW RAK HG+E+DIA+ER+Q WISRS+    
Sbjct: 481 HGESRFIDAYELGEAEQEDVAFKQAWLMYFWGRAKLHGVEDDIAEERVQLWISRSSGKSQ 540

Query: 541 PSSHDAVEVEQGLIELRKLGIERRMWEASRKE 547
            +SHDA++VE+GLIELRKLGIE+++WEASR+E
Sbjct: 541 TTSHDALDVERGLIELRKLGIEQQLWEASRRE 559

[Close]

BLAST of CmaCh08G000200 vs. TAIR 10
Match: AT5G23700.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 480.3 bits (1235), Expect = 2.0e-135
Identity = 304/585 (51.97%), Postives = 375/585 (64.10%), Query Frame = 0


Query: 1   MDVKRTESPIYARQWSSESGSTGGPASPAMSPARGHHVRSSSVSGTSNIKRTQNFAAKAA 60
           MD++R  SP+Y RQWS  S  T    SP+MSPA  H  +   V G S +KRTQN A KAA
Sbjct: 1   MDLRRPSSPVYGRQWSRSSNGTES-RSPSMSPA--HRNQIGGVGGLSTVKRTQNVATKAA 60

Query: 61  AQRLAQVMASQTADDDEDDQDDLGFRYGAPPPISLSRNVNNGSRLAVPTGKTTRSPSPGL 120
           AQRLA+VMA Q  D++EDD DD      APP    S    NGS       +  RS SP +
Sbjct: 61  AQRLAKVMALQNKDNEEDDDDDDHEFKFAPP----SSGPINGS-----FARRNRSHSPAI 120

Query: 121 ARNFLEETPSVRSTSAGR-SSISHISLPVA-----PPKTTLRTATSMPPLDPPTNKQREK 180
            RN  E+  SVRS+S GR S+ S  S P A     PPK +L+    +PP+D  + K R++
Sbjct: 121 GRNITEQVTSVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPID-HSFKDRDQ 180

Query: 181 RFSSDTLHF-NNKDSGDQQEASALRDELDILQEENENILGKLRLEETRCKDAQTRVRELE 240
           R+  D     N++D G Q+EASALRDE+D+LQEENE +L KL   E   + A+ R RELE
Sbjct: 181 RYFGDVPRLVNSRDKGYQREASALRDEVDMLQEENEIVLEKLHRAEEMREAAEARARELE 240

Query: 241 KQVAALGEGVSLEAKLLSRKEAALRQREAALKEAKQSKDGGDNEIESLKSEVQKSKEETA 300
           KQVA+LGEGVSLEAKLLSRKEAALRQREAALK A + KDG   E+ SL+SE+Q  K+E  
Sbjct: 241 KQVASLGEGVSLEAKLLSRKEAALRQREAALKAANEKKDGKKEEVVSLRSEIQILKDEAE 300

Query: 301 NVVQHLHGVEHDVKALRSMTQRMILTQKEMEEVVLKRCWLARYWGLAAKYGICLDIAVTK 360
              + L   E + KALR MTQRM+LTQ EMEEV LKRCWLARYWGLA ++GIC DIA ++
Sbjct: 301 TAAECLQEAESEAKALRIMTQRMVLTQDEMEEVALKRCWLARYWGLAVQHGICADIAPSR 360

Query: 361 YEHWSSLAPLPFEIVISAGQKAKEEFSQKVPFTAPGDLDTEQRSTLVPDISDLTGEGNIE 420
           +E WS+LAPLPFE+VISA QK K++ S+   F                 +SDL GEGNIE
Sbjct: 361 HEKWSALAPLPFELVISAAQKTKDDQSKTARF-----------------LSDLPGEGNIE 420

Query: 421 SMLSVEMGLKELASLKVEEAIVLALAQQRRPNSARQSLSDIKSPVDPKFMEAF------- 480
           SMLSVEMGL+ELASLKVE+A++LA AQ+R P+  RQ   D K   +  F+E++       
Sbjct: 421 SMLSVEMGLRELASLKVEDAVMLAFAQKRTPSLVRQ---DSKGHGELSFVESYGKRRESK 480

Query: 481 ------------------------ELSPEESEDVLFKEAWLTYFWRRAKAHGIEEDIAKE 540
                                   E+   E EDV FK+AWL YFW RAK H +EEDIA E
Sbjct: 481 HAQYIISAVKLDEILTMLSHFSNAEIKEGEQEDVAFKQAWLMYFWGRAKLHSVEEDIADE 540

Query: 541 RLQFWISRS-AHSPSSHDAVEVEQGLIELRKLGIERRMWEASRKE 547
           R QFW SRS   SP+S DAV+VE+GL+ELRKLG+E+++WEA RKE
Sbjct: 541 RFQFWTSRSEGKSPTSQDAVDVERGLLELRKLGVEQQLWEACRKE 552

[Close]

BLAST of CmaCh08G000200 vs. TAIR 10
Match: AT3G48860.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23700.1); Has 12232 Blast hits to 9546 proteins in 892 species: Archae - 172; Bacteria - 1174; Metazoa - 6487; Fungi - 1343; Plants - 856; Viruses - 50; Other Eukaryotes - 2150 (source: NCBI BLink). )

HSP 1 Score: 440.3 bits (1131), Expect = 2.3e-123
Identity = 276/490 (56.33%), Postives = 335/490 (68.37%), Query Frame = 0


Query: 1   MDVKRTESPIYARQWSSESGSTGGPASPAMSPARGHHVRSSSVSGTSNIKRTQNFAAKAA 60
           MD +R  SP+Y RQWS  S ST    SPAMSPA  H  +   + G S +KRTQN AAKAA
Sbjct: 1   MDRRRAGSPVYGRQWSESSNSTEA-TSPAMSPA--HRKQLGGIGGFSTVKRTQNVAAKAA 60

Query: 61  AQRLAQVMASQTAD----DDEDDQDDLGFRYG---------APPPI-SLSRNVNNGSR-- 120
           AQRLA+VMA Q  D    DDED+ +DL  R+          AP  I S   N +NG+   
Sbjct: 61  AQRLAKVMALQNKDNGDEDDEDEDEDLSLRFASASLKPARHAPSSISSTGSNSSNGNNNL 120

Query: 121 LAVPTGKTTRSPSPGLARNFLEETP-SVRSTSAGRSSISHIS-----LP--VAPPKTTLR 180
            AV     TRSPSP L RNF E+ P SVRS SAGR S+S  S     +P  + P + +++
Sbjct: 121 PAVSFAPRTRSPSPALGRNFAEQVPSSVRSASAGRPSMSARSTTPTPIPNLMPPSRVSVK 180

Query: 181 TATSMPPLDPPTNKQREKRFSSDTLHFNNKDSGDQQEASALRDELDILQEENENILGKLR 240
           T  S+PPLDPPT + R+KRF +D    N+K+ GDQ+EASALRDELD+LQEENEN+L KLR
Sbjct: 181 TPVSIPPLDPPT-RSRDKRFFADVPSVNSKEKGDQREASALRDELDMLQEENENVLEKLR 240

Query: 241 LEETRCKDAQTRVRELEKQVAALGEGVSLEAKLLSRKEAALRQREAALKEAKQSKDGGDN 300
             E +  +A+ R +ELEKQVA+LGEGVSLEAKLLSRKEAALRQREAAL  AKQ K G D 
Sbjct: 241 RAEEKRVEAEARAKELEKQVASLGEGVSLEAKLLSRKEAALRQREAALNVAKQKKSGKDE 300

Query: 301 EIESLKSEVQKSKEETANVVQHLHGVEHDVKALRSMTQRMILTQKEMEEVVLKRCWLARY 360
           EI SL+SE++  K+E     + L   E + K+LR+MTQRMILTQ EMEEVVLKRCWLARY
Sbjct: 301 EIVSLRSELENLKDEATTAAERLQEAESEAKSLRTMTQRMILTQDEMEEVVLKRCWLARY 360

Query: 361 WGLAAKYGICLDIAVTKYEHWSSLAPLPFEIVISAGQKAKEEFSQKVPFTAPGDLDTEQR 420
           WGLA ++GIC DIA ++ EHWS LAPLPFE+V SA QKAKE            D     R
Sbjct: 361 WGLAVQHGICADIAPSRQEHWSKLAPLPFELVTSAAQKAKE---------LSWDKGGNDR 420

Query: 421 STLVPDISDLTGEGNIESMLSVEMGLKELASLKVEEAIVLALAQQRRPNSARQSLSDIKS 467
           S    D+SDLTGEGNIESMLSVEMGL+ELASLKVE+A+VL  AQQR+ +  R ++SD K 
Sbjct: 421 SKAARDLSDLTGEGNIESMLSVEMGLRELASLKVEDAVVLIFAQQRKLSLVRHTVSDSKG 477

[Close]

BLAST of CmaCh08G000200 vs. TAIR 10
Match: AT4G25070.1 (unknown protein; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 14837 Blast hits to 10961 proteins in 1163 species: Archae - 189; Bacteria - 1924; Metazoa - 7665; Fungi - 1127; Plants - 653; Viruses - 80; Other Eukaryotes - 3199 (source: NCBI BLink). )

HSP 1 Score: 396.4 bits (1017), Expect = 3.8e-110
Identity = 208/363 (57.30%), Postives = 276/363 (76.03%), Query Frame = 0


Query: 184 NNKDSGDQQEASALRDELDILQEENENILGKLRLEETRCKDAQTRVRELEKQVAALGEGV 243
           N+    D +EASALRDELD+LQEEN+NI+ KL+  E R + A+ R +ELEKQVA+LGEG 
Sbjct: 393 NSNQQEDDREASALRDELDMLQEENDNIMDKLQRAEERREAAEARAKELEKQVASLGEGA 452

Query: 244 SLEAKLLSRKEAALRQREAALKEAKQSKDGGDNEIESLKSEVQKSKEETANVVQHLHGVE 303
           + + KLL RKEAALRQREAAL+ A+Q +DG + E  +L SE Q  K+E     + L  VE
Sbjct: 453 NFDVKLLKRKEAALRQREAALRAAEQKRDGRNRETNALSSEFQSLKDEAEKSTEQLQEVE 512

Query: 304 HDVKALRSMTQRMILTQKEMEEVVLKRCWLARYWGLAAKYGICLDIAVTKYEHWSSLAPL 363
            ++K+LR+M  R IL+Q+EMEEVVLKRCWLARYW LA ++GIC DI+ ++YEHWS+LAPL
Sbjct: 513 AEIKSLRTMIHRTILSQEEMEEVVLKRCWLARYWELAVQHGICEDISTSRYEHWSALAPL 572

Query: 364 PFEIVISAGQKAKEEFSQKVPFTAPGDLDTEQRSTLVPDISDLTGEGNIESMLSVEMGLK 423
           P E+V+SA QK+++ +      T   D      S ++ + SDL GEGNIESML+VE GL+
Sbjct: 573 PSEVVLSAAQKSEDSWQ-----TGGSD---RTWSKVISNFSDLNGEGNIESMLAVETGLR 632

Query: 424 ELASLKVEEAIVLALAQQRRPNSARQSLSDIKSPVDPKFMEAFELSPEESEDVLFKEAWL 483
           E+ASLKVE+A++LAL++ R+ N ARQ+++D +   +PKF E FELS +E +D+LFKEAWL
Sbjct: 633 EIASLKVEDAVMLALSRYRQTNVARQAVTDPRVQGEPKFSETFELSHDEQQDILFKEAWL 692

Query: 484 TYFWRRAKAHGIEEDIAKERLQFWISRSAHSPSSHDAVEVEQGLIELRKLGIERRMWEAS 543
            YFW+RAK HG+E DIA+ERLQFWI+R     SSHDA++VE+G+ ELRKLGIE+++WE S
Sbjct: 693 LYFWKRAKIHGVESDIAEERLQFWINRLGQHSSSHDAIDVERGMRELRKLGIEQQLWETS 747

Query: 544 RKE 547
           RKE
Sbjct: 753 RKE 747

The following BLAST results are available for this feature:

BLAST of CmaCh08G000200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWD5	7.7e-156	57.69	Coiled-coil domain-containing protein SCD2 OS=Arabidopsis thaliana OX=3702 GN=SC...	[more]

BLAST of CmaCh08G000200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13260.1	1.4e-173	63.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G48860.2	5.5e-157	57.69	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma mem...	[more]
AT5G23700.1	2.0e-135	51.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G48860.1	2.3e-123	56.33	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma mem...	[more]
AT4G25070.1	3.8e-110	57.30	unknown protein; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 250..291
None	No IPR available	COILS	Coil	Coil	coord: 194..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..195
None	No IPR available	PANTHER	PTHR31762:SF11	MYOSIN	coord: 1..547
IPR040321	Coiled-coil domain-containing protein SCD2-like	PANTHER	PTHR31762	FAS-BINDING FACTOR-LIKE PROTEIN	coord: 1..547

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G000200.1	CmaCh08G000200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000911	cytokinesis by cell plate formation