CmaCh08G000170 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh08G000170
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	LITAF domain-containing protein
Location	Cma_Chr08: 99169 .. 101714 (-)
RNA-Seq Expression	CmaCh08G000170
Synteny	CmaCh08G000170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGGCCAAACCTAAACCAATTTTCTTACGCCAAATTTCTCCTCTTCCCTTCCATTGTAATCCTCCCCTACCGCCGTTTTTCGTTTTTCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAACATGTCCAAGGACGACACCCCGGTCGTCGGAACTCAGGTCGGAAAGACCGCGCCCGACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCACCGTCAGGTGCCCTTTCTACCTTCTCTCTACCACTGCGTCTGCGTTGCTTTTCTCCTCTCTTTTATCTTTTTGAAATTCTGCGTTTATTTATTTATTTATTTTTTTTTTTTTTTGGAACTTCTATTTGATTGATCAATGGGCCTTCCCCGTTTTTCTTTCTTTCACCTAATTTTGGTGTTTAGGATTTGAATACTTGTATGCGTAAAATTGTTTTGGGTTGATCTTGCTTACAACCCAAGGCAAGTATTTTGTGGTGCTTGTCGATATGTTTTAACAAGTAATTCAAATTATTTACTTTACTATGGTTAAATAATAATGTTCACCAGATTGTGGTAGTTCCGAGCGATTGCTGTTTGTGTTTGGCTTCTTACATAAATCTAGTTGGATTATATAACAGTTCAGTCAGGACGCAGGTGCAAAGTGATATAAATTCAAGGCCTCCCAAATGCTTTACACCATACCAACAACTTTTGTTTGGTTGTAAATCCCTTTTCATTTTACAAACATTCAATTGGTTTACTTTTACCAAAGATGCTCCGAGCATTATTATTGTTAGTGAGGCAGCATTGCTTTGCCTTGCAACCGGGGCATTTGAAATTTTATCGTGCAGGACTTGTCAGTCAAATCGATTTTTTTTTTTTGTTCAACAACATCTATGACAATCACAATAATAGCATAAATCAAATAGGTTTGTTTTTAGTGATAGAAGCATAAAGGACTATAAGCCCAAATGTTGGAATTGCTTACACTCTTACAAAAAATGTTGATGCACGTAAGCTCAACACTTGTTGGTAGCAGGCCACCGATATGATTTATCATGGTTGAACAGCAAAAGTTTGTGTACATTTATTTTGACCAAGAAGATGTAGGCGGGGAGTGGGGGGAGAGAGGCGGATGTTGTCTGTTTGCGTTCAATTGAATAATTATGTTTGTTCTTCATCTGGTTATGATACTTTCGTGACCTCTACAGATCAAAGATAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTATGACTATTTCCGGTCATCTTTCATTCTCTCAGTTGCTTCTTGTAATCTACATGTTGATTATTTGACACTTTGCTCTGTTATAGACAATTGGAGTAATTAACTATTCTATCTATCTTTTGTTTAGGTTGGCGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCCTTGCGTTGCCTGCTTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTCCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACACTTAGGAGGGATAGGCAAAGATTGGAGATGTGTGCATACGTACACTCGTGATAGAACCAAGTACATATTTTTATTCATTCACCTTACAAGTCATTTCATACACCTTTTGTTCATTCACCTTACAAGTCTAGATTGCATACGTTTGTCCAATTAATTTCCCTTGGCTGCACACTATCTGCATCCCCCTATCGTCATTTGTTTTTAACTTCTCAAATTACATTTTGACCATGCATCTCCCCCTTCGGACGAATCGTTCATAGGGGCTTCTTTTCCTTCTTAATTTGGTTTTCCTGCTTGGTTTTGAGGGGACTTGAACTCTGATCCTTGATGGTACTATCTGGTATCACACAAGTAAGCCGTGAAGAAACATCTTGGAAAAGATGATATACCTGAGTTCATTGGGGTGCTGCCCAGATGCAGATGAATCTAATTGGAATGCTGCGGTTTTGAATCTGGAAGCGAAGGCCCGGCATGAGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCAGGGGGTATGCCACGGCAGAACGTCCGCTTAAAGACGATGGCAGCTTTTACAGATCCCTTTCATGGAGTTGCAGGCTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAATACATGACTCTCCATTCCCATGTTGAACATTACTTCCTTTCTTCCCGAGTAGAAAAGGAATTAAAGCCCCCTTGTGTGCATTCCTTTTGAACCAAAAGGAGAATTTGTGTATGTGTGGATTGAAGTTTGGTTTTATATGTTAAAATTAGCGGCAGCTCCACAACAACATGCTATGCACTCTACACTCTACACTCATCGAGATTTGTGCCTCGGAATATATTCTGTAC

mRNA sequence

AGGCCAAACCTAAACCAATTTTCTTACGCCAAATTTCTCCTCTTCCCTTCCATTGTAATCCTCCCCTACCGCCGTTTTTCGTTTTTCCGATTCGCCGTCGGACCACCACAGGGAAAAACCTTTCCAAACATGTCCAAGGACGACACCCCGGTCGTCGGAACTCAGGTCGGAAAGACCGCGCCCGACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCACCGTCAGATCAAAGATAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGCGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCCTTGCGTTGCCTGCTTGATTTTCACGAGCTGCTACTTTTCCACGCGGTTATTTTCCGTTGTGTGCAGTCAGTTTTTGCTCTACTCTTGTGCTCTTGTTGAGATATTCTTGTTACACTTAGGAGGGATAGGCAAAGATTGGAGATGTGTGCATACGTACACTCGTGATAGAACCAAGGGACTTGAACTCTGATCCTTGATGGTACTATCTGGTATCACACAAGTAAGCCGTGAAGAAACATCTTGGAAAAGATGATATACCTGAGTTCATTGGGGTGCTGCCCAGATGCAGATGAATCTAATTGGAATGCTGCGGTTTTGAATCTGGAAGCGAAGGCCCGGCATGAGAAATAAGAGCCGGTCTCGATAGCCAAAGAGACTGCCTGCAGGGGGTATGCCACGGCAGAACGTCCGCTTAAAGACGATGGCAGCTTTTACAGATCCCTTTCATGGAGTTGCAGGCTGCAGGCTGCAGGCAAGTCATCCTTGGCTACAATACATGACTCTCCATTCCCATGTTGAACATTACTTCCTTTCTTCCCGAGTAGAAAAGGAATTAAAGCCCCCTTGTGTGCATTCCTTTTGAACCAAAAGGAGAATTTGTGTATGTGTGGATTGAAGTTTGGTTTTATATGTTAAAATTAGCGGCAGCTCCACAACAACATGCTATGCACTCTACACTCTACACTCATCGAGATTTGTGCCTCGGAATATATTCTGTAC

Coding sequence (CDS)

ATGTCCAAGGACGACACCCCGGTCGTCGGAACTCAGGTCGGAAAGACCGCGCCCGACGCCATCTTTGACGATCCCCAGGGGGTTCCTATCCAGCAAACCATGTTCCGCGACACTCCTGCTCCTTTCTACTGTGTTTATTGTGGAAATTCCGGTCTCACCACCGTCAGATCAAAGATAAGTTCAGCTGCTGTGGTTGGTTGTATGATTCCACTTATGTTGGGAGTATGCTTTCTTTGTCCTTCAATGGACTGCCTTTGGCACAAGTATCACTATTGCCCCAGCTGCAAGGAAAAGGTTGGCGATTTTGAGAAATTGGATAAGTGTGCTGTGATGGATCCTTCAAACTGGACACAGCAAAGCCTTGCGTTGCCTGCTTGA

Protein sequence

MSKDDTPVVGTQVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSGLTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVMDPSNWTQQSLALPA

Homology

[Close]

BLAST of CmaCh08G000170 vs. ExPASy Swiss-Prot
Match: Q94CD4 (GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.6e-43
Identity = 81/134 (60.45%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M+K+ T V+G          Q G   P+AI+ DP G PIQQT++RDTPAPF C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LT +RSK   AAVV CM+P MLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP  W Q S ALPA
Sbjct: 121 DPPQWKQPSFALPA 134

[Close]

BLAST of CmaCh08G000170 vs. TAIR 10
Match: AT5G13190.1 (CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (InterPro:IPR006629); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 176.0 bits (445), Expect = 1.9e-44
Identity = 81/134 (60.45%), Postives = 94/134 (70.15%), Query Frame = 0


Query: 1   MSKDDTPVVGT---------QVGKTAPDAIFDDPQGVPIQQTMFRDTPAPFYCVYCGNSG 60
           M+K+ T V+G          Q G   P+AI+ DP G PIQQT++RDTPAPF C+YCGN+G
Sbjct: 1   MAKEGTTVIGVPYYAGQNPYQAGIVPPNAIYGDPLGAPIQQTIYRDTPAPFNCLYCGNTG 60

Query: 61  LTTVRSKISSAAVVGCMIPLMLGVCFLCPSMDCLWHKYHYCPSCKEKVGDFEKLDKCAVM 120
           LT +RSK   AAVV CM+P MLG CFLCPSMDCLW+K H+CP C  KV DFEK D C VM
Sbjct: 61  LTNLRSKPGVAAVVACMMPFMLGFCFLCPSMDCLWNKQHHCPQCGNKVADFEKSDPCLVM 120

Query: 121 DPSNWTQQSLALPA 126
           DP  W Q S ALPA
Sbjct: 121 DPPQWKQPSFALPA 134

The following BLAST results are available for this feature:

BLAST of CmaCh08G000170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CD4	2.6e-43	60.45	GSH-induced LITAF domain protein OS=Arabidopsis thaliana OX=3702 GN=GILP PE=1 SV...	[more]

BLAST of CmaCh08G000170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G13190.1	1.9e-44	60.45	CONTAINS InterPro DOMAIN/s: LPS-induced tumor necrosis factor alpha factor (Inte...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006629	LPS-induced tumour necrosis factor alpha factor	SMART	SM00714	litaf	coord: 39..104 e-value: 9.0E-14 score: 61.8
IPR006629	LPS-induced tumour necrosis factor alpha factor	PFAM	PF10601	zf-LITAF-like	coord: 37..101 e-value: 5.8E-13 score: 48.9
IPR006629	LPS-induced tumour necrosis factor alpha factor	PROSITE	PS51837	LITAF	coord: 24..104 score: 11.494141
None	No IPR available	PANTHER	PTHR23292:SF37	BNAC09G43880D PROTEIN	coord: 11..117
IPR037519	LITAF domain containing protein	PANTHER	PTHR23292	LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR	coord: 11..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G000170.1	CmaCh08G000170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding