CmaCh07G013390 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G013390
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein Ycf2
Location	Cma_Chr07: 7605858 .. 7610081 (-)
RNA-Seq Expression	CmaCh07G013390
Synteny	CmaCh07G013390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCTGAGGTTATCGATAAAAAAGATTTGTCTAAGTCACTTCGTTTCTTTTTGTCCAAGTTTCTTCTCTTTTTGTCTAACTCACTTCCTTTTTTCTTTGTGAGTTTTGGGAATATCCCCATTCATAGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAAAAATCGAAATTCTTGATCAATGGAGGAGGACGCGGCACCATCCTATTCGCCAGCAAGGGAGGCGAGCATCGCAAGCTGACCGACGTCTACTTCATCCCGAGGCTCAAGGCTAACCTTGTGAGCCTGGGTCAACTCGATGAGACAGGCTGTTTCATCTCCATCGAGCGCGGATTACTCAAAATTTGCGATAATCAACGACGGCTGCTCACACAGGCAAGGCGCACGACAAACCGTCTTTACATCCTGGAGTTACAGATAGAGCAACCTGTCAGTCTCTCGGCCAAGACCGAAGAGGTATCTTGGAGGTGACACGCAAGGTACGGGCATTTAAACTTTCCTGCTCTAGAAAAACTACAGAAGGAGGAGTTAGTGCACGGTTTGCCAGCAATCAAAGGCGTGAACAAGCTGTGCAACGGGTGCCTCATCGGCAAACAGAGGCGCACACCCTTTCCGTCTCGAACATCCTATCGAGCCGATGAGCCGTTGGAGCTTGTACACGGCGATATCTGCGGGCCCATCAAGCCGGCGACCCCAGGCGGTAAGAGTCTCTTCCTCCTGTTAGTCGATGACAAAAGCCGCTTCATGTGGTTGACCCTGCTGCAAGCAAAAAGTGAGGCGGCAGAGGCGGTTAAGTGCATTAAAGCGCGAGCGGAGGCCGAATGTGAGAAGAAGATGCGAGTGCTGCGCACAGACCGAGGCGGAGAATTCACCTCGACAAGTTTCGGTAAGTACTGTGACGAAATCGGCATACAACGGCACCTAACGGCGCCCTACTCCCCCCAACAGAACGGAGTGTTGGAGCGCCGGAATCAGACCATCGTCGGGACAGCAAGGTCATTGTTGGTGACGGCCGGGATGCCTGGGAGATTCTGGGGAGAGGCAGTAATGACGGCCGTATATCTCCTCAATCGGTCACCAACCCAAAGCCTTGACGGGAAGACACCATATGAGGCCTGGTACAACAAAAAACCAGCGGTACATCATTTTCGCGTGTTCGGTTGCGTCGCTTACATGAAGGTAACACGTCCCCACCTCGCCAAGCTCGATCCTAAGGGGCTGAAGGTCGTTTTTATTGGCTATGAACCCGGGAGCAAGGCGTACAGACTATATGATCCTGTAGGGGGGCGAGCTCACGTGTCTCGCGACGTCGTCTTCGATGAAAGCACCTTCTGGCAGTGGAATGACGTGATCGAGGCAGACCATAATCCAAATCAATTTACGGTGAAGTACCTCGTCACTGAGTCGGAAGAAGGAGGAGCCCAGCATCAGCAGCCGTCACCGCCGCCAGCAGGTGCAACCCCTGAACCAGTGGAATTCGCAACACCACGGACAGCGGATTCGACGCTGGATGCCGATCACGATACTGATCTGGAGGCCAGGTACCGGAGGATGGACGACATAGTAGGAGGAGGTGAACCACCTGGACTGGCAGTGCGCGAGCTCGAAGAAGTGGTCGAACTACATGCCATCAGTGCAGATGAACCGAGCACCTTCGCCGAAGCAGAAAAGAACCCGTGCTGGCTGAAGGCAATGTAGGAGGAGATGACATCCATCACCGAAAATCAAACGTGGAGTCTGGAGGATATGCCGCCGGGACACCAAGCCATAGGGCTCAAATGGGTCTTCAAACTGAAGCACAACGAAAAAGGAGAAGTTGTGAAACACAAGGCCCGTCTGGTGGCGAAGGGCTACGTCCAGAAGCAAGGAGTGGACTTCGAAGAGGTATTTGCGCCAGTGGCAAGGTTAGAATCCGTTCGTTTCTTACTTGCAATTGCAGCACATTACTCTTGGGAGGTTCACCATATGGACGTAAAGTCTGCTTTCCTTAACGGAGAGCTGAAGAAGACTGTTTATGTCCGACAACCACCTGGCTTCCTGGTTAACAACAACCCCAATAAAGTATTGCGCCTGCACAAGGCACTCTACGGACTTCGACAAGCTCCACGAGCCTGGAACGCGAAGCTCGACAGTACCTTACTGTCACTGAAATTCAAACGTTGCGCTTCTGAGCATGGCATGTACACGCACGGCCATGACAAGAAGCGACTAATCGTGGGAGTGTACGTCGACGACCTCATAATCACTGGAGGTGACATGGAAGTCCTCGGAAGGTTCAAAAAGGAGATGTCGAAAAACTTCGAGATGAGCGATCTCGGCGTGCTCAGCTACTATCTCGGCATCGAAGTGCAACAGAATTCTACCGGCATCTCCATCTGCCAAAGTGCATACGCAAAGAAGCTACTGGACACAACTGGACTTGTGGACAGTAATCCTACAAGGACGCCAATGGAGGCCCGACTCCAACTAAGGAAGGCTGGCACTACGACGACAGTCGACTCCACCAATTACCGCAGCATTGTCGGGAGTCTACGCTATCTGGTAAACTCTCGTCCTGATCTTGCTTATTCTGTTGGATATGTGAGCCGGTTTATGGAAGCACCTAGGGAGGAGCATTTAGTGGCTGTCAAGCGCATCCTGCGCTATGTAGCCGGAACCAGAGGCTGGGGTGTAAGATACTGCGCAGGGAGCGGAAAGGAGAAACTCAAGCTAGTTGGCTACAGTGATAGTGACATGGCCGGTGACGTTGATGATCGTAAGAGCACTAGCGGAATGATCTACTTTCTCTCAGGCGGCGCAATCTGCTGGCAATCAACAAAACAGAAGGTAGTTGCTTTGTCTTCCTGTGAAGCAGAATACATCGCCGCTTCGATGGCAGCCACACAAGGGATCTGGCTTGCGCGACTAATGGAAGAACTCATCGGGAGAGAAAGTGATCCACCAATGCTATACGTAGACAACAAAGCTACGATCTCCCTGATCAAAAATCCAGTTTTGCATGAACGAAGCAAGCACATAGAAATCAGATTCCACTACATTCGAGAATGTGCAGATCGAGGGCTCATCAAAATTGATTACATCCGAACAGAAGAACAACTTGGAGACATCTTCACCAAGTCCCTGGCGCGGGTGAAATTTGAAGAACTACGCTCAAAGATCGGAGTTCAAATAGTAAGGTAGATATACTACAGGTTTTAGGAGGAGATTGTTAGATAAAACCTGAGTTTTACCGTTTTTCTTAATCACACGATTTCAGAAAATCGTCCGTTTGACCATTTGACAAATCACGTCGAATGGATCACCATAGTTTTAGACTGAAATTTTGTAGGGAGTGGCACAGATTTAGTTGGCCACTCTCAGCCAATTTTAGAATCCTTTTTACTTTAAATAGGATATTTGTTCAGAAAATAAAACAACCTGAACGCAGTCAGAGTTATTTTTCTCTCTCCTTTTTGTTACGCATTTTCCCAATTTTCTCTCACCGAAATTCTATTATGTGAAAAACAATAAAGAACACTGTTCAGCAGCTTATCATGACCGGCGGCCATATTCAAGGAGACATCTTAGCTCCTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGTTCGTCCGATTTGTCATCTTTTTCGGCTTGGAAGATCTTATATTTATATATTTTTTTCGTCTTTAGTTCCTTAAAATCTCTTTGTTGCTACGCAAAGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTTGATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAAGGTACTGTACTTTCTATGTCTATTATTGCTGACAAATCTTGATAATCCAAATTCGGTAGTTTATAAGAATAGTGTGAATATAGTCATTGA

mRNA sequence

ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGCTCCTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTTGATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAAGTGTGAATATAGTCATTGA

Coding sequence (CDS)

ATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATAGGAGCAAGAATTTCCAGGAACATTTCATTTCTGAGCAGAAGAGCCATTTTCATTTTCAAGTAGTGTTCGCTCGATTACGTATTAATCAATATTCGATTGATTGGTCCGAGATCCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGCTCCTGAGGAGGTCGTTTCTTTACTTCTCGACGATGCGCAGTTGGAGCAAAAATTACGAGAAATACCTATTGTGGGTAGATATCAGAACAAACAAGCGAAGGGTATAAGAGTTGATGCTGAGGGAGATGCATCCTTGGAGGATTTAATGAACACCGAATCTCGGGGTACTGAATATGACGTTCCATCTCCTGATCCCGAAAAAACTAACTCCAGCACGAAAAAGTGTGAATATAGTCATTGA

Protein sequence

MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDWSEIHIYELKGPNDQLCNQLLESIAPEEVVSLLLDDAQLEQKLREIPIVGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEYDVPSPDPEKTNSSTKKCEYSH

Homology

[Close]

BLAST of CmaCh07G013390 vs. ExPASy Swiss-Prot
Match: Q2QD30 (Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-28
Identity = 75/144 (52.08%), Postives = 79/144 (54.86%), Query Frame = 0


Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW----------- 60
           MNRDPNAYRYKWSN SKNFQEHFISEQKSHFHFQVVF RLRINQYSIDW           
Sbjct: 513 MNRDPNAYRYKWSNGSKNFQEHFISEQKSHFHFQVVFDRLRINQYSIDWSEVIDKKDWSK 572

Query: 61  --------------------------------------SEIHIYELKGPNDQLCNQLLES 91
                                                 SEIHIYELKGPND+LCNQLLES
Sbjct: 573 SLRFFLSKLLVFLSKFLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDRLCNQLLES 632

[Close]

BLAST of CmaCh07G013390 vs. ExPASy Swiss-Prot
Match: Q09MB4 (Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-24
Identity = 74/149 (49.66%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 1   MNRDPNAYRYKWSNRSKNFQE---HFISEQKSHFHFQVVFARLRINQYSIDW-------- 60
           MNRDPNAYRYKWSN SKNFQE   HF+SEQKS   FQVVF RLRINQYSIDW        
Sbjct: 805 MNRDPNAYRYKWSNGSKNFQEHLKHFVSEQKS--RFQVVFDRLRINQYSIDWSEVIDKKD 864

Query: 61  ----------------------------------SEIHIYELKGPNDQLCNQLLESIAPE 100
                                             SEIHIYELKGPNDQLCNQLLESI  +
Sbjct: 865 LSKPLPFFLSKFLFFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLESIGLQ 924

[Close]

BLAST of CmaCh07G013390 vs. ExPASy Swiss-Prot
Match: Q14F97 (Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-24
Identity = 71/144 (49.31%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW----------- 60
           MN DPN+YRYKWSN S NFQEHFISEQKS F FQVVF RLRINQYSIDW           
Sbjct: 805 MNWDPNSYRYKWSNGSNNFQEHFISEQKSRFLFQVVFDRLRINQYSIDWSEVIDKKDLSK 864

Query: 61  --------------------------------------SEIHIYELKGPNDQLCNQLLES 91
                                                 SEIHIYELKGPNDQLCNQLLE 
Sbjct: 865 SLPFFLSKLLLFLSKFILFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLEP 924

[Close]

BLAST of CmaCh07G013390 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-23
Identity = 69/140 (49.29%), Postives = 75/140 (53.57%), Query Frame = 0


Query: 1   MNRDPNAYRYKWSNRSKNFQEHFISEQKSHFHFQVVFARLRINQYSIDW----------- 60
           MNRDP+AYRYKWSN SKNFQEHF+SEQKS   FQVVF RLRINQYSIDW           
Sbjct: 806 MNRDPDAYRYKWSNGSKNFQEHFVSEQKS--RFQVVFDRLRINQYSIDWSEVIDKKDLSK 865

Query: 61  --------------------------------------SEIHIYELKGPNDQLCNQLLES 87
                                                 SEIHIYELKGPNDQLCNQLLES
Sbjct: 866 SLRFFLSKSLLFLSKSLLFLSKSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQLLES 925

[Close]

BLAST of CmaCh07G013390 vs. ExPASy Swiss-Prot
Match: A0ZZ78 (Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-23
Identity = 72/147 (48.98%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 1   MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW-------- 60
           MNRDPNAYRYKWSN SKNFQ   EHF+SEQKS   FQVVF RLRINQYSIDW        
Sbjct: 803 MNRDPNAYRYKWSNGSKNFQEHLEHFVSEQKS--RFQVVFVRLRINQYSIDWSEVIDKKD 862

Query: 61  -----------------------------------------SEIHIYELKGPNDQLCNQL 91
                                                    SEIHIYELKGPNDQLCNQL
Sbjct: 863 LSKSLRFFLSKLLLFLSKLLLFLSNSLPFFFVSFGNIPIHRSEIHIYELKGPNDQLCNQL 922

[Close]

BLAST of CmaCh07G013390 vs. ExPASy TrEMBL
Match: A0A6J1EBE0 (Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1298 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1357

Query: 132  EYDVPSPDPEKTNSSTKKCEY 151
            EYDVPSPDPEKTNSSTKK  Y
Sbjct: 1358 EYDVPSPDPEKTNSSTKKVLY 1378

[Close]

BLAST of CmaCh07G013390 vs. ExPASy TrEMBL
Match: A0A6J1EAZ7 (Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1363 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1422

Query: 132  EYDVPSPDPEKTNSSTKKCEY 151
            EYDVPSPDPEKTNSSTKK  Y
Sbjct: 1423 EYDVPSPDPEKTNSSTKKVLY 1443

[Close]

BLAST of CmaCh07G013390 vs. ExPASy TrEMBL
Match: A0A6J1EEE8 (Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.9e-30
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1357 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1416

Query: 132  EYDVPSPDPEKTNSSTKKCEY 151
            EYDVPSPDPEKTNSSTKK  Y
Sbjct: 1417 EYDVPSPDPEKTNSSTKKVLY 1437

[Close]

BLAST of CmaCh07G013390 vs. ExPASy TrEMBL
Match: A0A6J1HMW1 (Chromatin-remodeling ATPase INO80 OS=Cucurbita maxima OX=3661 GN=LOC111466067 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.2e-30
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 72  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
           +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 218 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 277

Query: 132 EYDVPSPDPEKTNSSTKK 148
           EYDVPSPDPEKTNSSTKK
Sbjct: 278 EYDVPSPDPEKTNSSTKK 295

[Close]

BLAST of CmaCh07G013390 vs. ExPASy TrEMBL
Match: A0A6J1EH30 (Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 4.2e-30
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1357 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1416

Query: 132  EYDVPSPDPEKTNSSTKK 148
            EYDVPSPDPEKTNSSTKK
Sbjct: 1417 EYDVPSPDPEKTNSSTKK 1434

[Close]

BLAST of CmaCh07G013390 vs. NCBI nr
Match: XP_022925142.1 (DNA helicase INO80-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 3.9e-30
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1363 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1422

Query: 132  EYDVPSPDPEKTNSSTKKCEY 151
            EYDVPSPDPEKTNSSTKK  Y
Sbjct: 1423 EYDVPSPDPEKTNSSTKKVLY 1443

[Close]

BLAST of CmaCh07G013390 vs. NCBI nr
Match: XP_022925146.1 (DNA helicase INO80-like isoform X5 [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 3.9e-30
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1298 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1357

Query: 132  EYDVPSPDPEKTNSSTKKCEY 151
            EYDVPSPDPEKTNSSTKK  Y
Sbjct: 1358 EYDVPSPDPEKTNSSTKKVLY 1378

[Close]

BLAST of CmaCh07G013390 vs. NCBI nr
Match: XP_022925143.1 (DNA helicase INO80-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 142.1 bits (357), Expect = 3.9e-30
Identity = 76/81 (93.83%), Postives = 77/81 (95.06%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1357 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1416

Query: 132  EYDVPSPDPEKTNSSTKKCEY 151
            EYDVPSPDPEKTNSSTKK  Y
Sbjct: 1417 EYDVPSPDPEKTNSSTKKVLY 1437

[Close]

BLAST of CmaCh07G013390 vs. NCBI nr
Match: XP_022925144.1 (DNA helicase INO80-like isoform X3 [Cucurbita moschata])

HSP 1 Score: 141.0 bits (354), Expect = 8.7e-30
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 72   IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
            +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 1363 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 1422

Query: 132  EYDVPSPDPEKTNSSTKK 148
            EYDVPSPDPEKTNSSTKK
Sbjct: 1423 EYDVPSPDPEKTNSSTKK 1440

[Close]

BLAST of CmaCh07G013390 vs. NCBI nr
Match: XP_022966407.1 (DNA helicase INO80-like [Cucurbita maxima])

HSP 1 Score: 141.0 bits (354), Expect = 8.7e-30
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 72  IAPEEVVSLLLDDAQLEQKLREIPIV--GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 131
           +APEEVVSLLLDDAQLEQKLREIPIV  GRYQNKQAKGIRVDAEGDASLEDLMNTESRGT
Sbjct: 218 LAPEEVVSLLLDDAQLEQKLREIPIVAKGRYQNKQAKGIRVDAEGDASLEDLMNTESRGT 277

Query: 132 EYDVPSPDPEKTNSSTKK 148
           EYDVPSPDPEKTNSSTKK
Sbjct: 278 EYDVPSPDPEKTNSSTKK 295

[Close]

BLAST of CmaCh07G013390 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-21
Identity = 68/155 (43.87%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 1   MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW-------- 60
           +NRDPNAYRYKWSN SKNFQ   EHF+SE+KS   FQVVF +L INQYSIDW        
Sbjct: 805 INRDPNAYRYKWSNGSKNFQEHLEHFVSERKS--RFQVVFDQLCINQYSIDWSEVIDKKD 864

Query: 61  -------------------------------------------------SEIHIYELKGP 91
                                                            SEIHIYELKGP
Sbjct: 865 LSKSLRFFLSKLLRFFLSKLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGP 924

[Close]

BLAST of CmaCh07G013390 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 99.0 bits (245), Expect = 3.5e-21
Identity = 68/155 (43.87%), Postives = 75/155 (48.39%), Query Frame = 0


Query: 1   MNRDPNAYRYKWSNRSKNFQ---EHFISEQKSHFHFQVVFARLRINQYSIDW-------- 60
           +NRDPNAYRYKWSN SKNFQ   EHF+SE+KS   FQVVF +L INQYSIDW        
Sbjct: 805 INRDPNAYRYKWSNGSKNFQEHLEHFVSERKS--RFQVVFDQLCINQYSIDWSEVIDKKD 864

Query: 61  -------------------------------------------------SEIHIYELKGP 91
                                                            SEIHIYELKGP
Sbjct: 865 LSKSLRFFLSKLLRFFLSKLLLFLSKLLLFLSNSLPFFFVSFENIPIHRSEIHIYELKGP 924

[Close]

BLAST of CmaCh07G013390 vs. TAIR 10
Match: AT3G57300.1 (INO80 ortholog )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 76   EVVSLLLDD---AQLEQKLREIPI-VGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEY 135
            +VVSLL+DD   AQLEQK RE+P+ V   Q K+ K IR+DAEGDA+LE+L + + +    
Sbjct: 1369 DVVSLLMDDAEAAQLEQKFRELPLQVKDRQKKKTKRIRIDAEGDATLEELEDVDRQDNGQ 1428

Query: 136  DVPSPDPEKTNSSTKK 148
            + P  +PEK  SS KK
Sbjct: 1429 E-PLEEPEKPKSSNKK 1443

[Close]

BLAST of CmaCh07G013390 vs. TAIR 10
Match: AT3G57300.2 (INO80 ortholog )

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-09
Identity = 39/76 (51.32%), Postives = 52/76 (68.42%), Query Frame = 0


Query: 76   EVVSLLLDD---AQLEQKLREIPI-VGRYQNKQAKGIRVDAEGDASLEDLMNTESRGTEY 135
            +VVSLL+DD   AQLEQK RE+P+ V   Q K+ K IR+DAEGDA+LE+L + + +    
Sbjct: 1402 DVVSLLMDDAEAAQLEQKFRELPLQVKDRQKKKTKRIRIDAEGDATLEELEDVDRQDNGQ 1461

Query: 136  DVPSPDPEKTNSSTKK 148
            + P  +PEK  SS KK
Sbjct: 1462 E-PLEEPEKPKSSNKK 1476

The following BLAST results are available for this feature:

BLAST of CmaCh07G013390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD30	2.9e-28	52.08	Protein Ycf2 OS=Cucumis sativus OX=3659 GN=ycf2-A PE=3 SV=1	[more]
Q09MB4	4.3e-24	49.66	Protein Ycf2 OS=Citrus sinensis OX=2711 GN=ycf2-A PE=3 SV=1	[more]
Q14F97	4.3e-24	49.31	Protein Ycf2 OS=Populus alba OX=43335 GN=ycf2-A PE=3 SV=1	[more]
A6MM80	1.3e-23	49.29	Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1	[more]
A0ZZ78	1.6e-23	48.98	Protein Ycf2 OS=Gossypium barbadense OX=3634 GN=ycf2-A PE=3 SV=1	[more]

BLAST of CmaCh07G013390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EBE0	1.9e-30	93.83	Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 ...	[more]
A0A6J1EAZ7	1.9e-30	93.83	Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 ...	[more]
A0A6J1EEE8	1.9e-30	93.83	Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 ...	[more]
A0A6J1HMW1	4.2e-30	96.15	Chromatin-remodeling ATPase INO80 OS=Cucurbita maxima OX=3661 GN=LOC111466067 PE...	[more]
A0A6J1EH30	4.2e-30	96.15	Chromatin-remodeling ATPase INO80 OS=Cucurbita moschata OX=3662 GN=LOC111432477 ...	[more]

BLAST of CmaCh07G013390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022925142.1	3.9e-30	93.83	DNA helicase INO80-like isoform X1 [Cucurbita moschata]	[more]
XP_022925146.1	3.9e-30	93.83	DNA helicase INO80-like isoform X5 [Cucurbita moschata]	[more]
XP_022925143.1	3.9e-30	93.83	DNA helicase INO80-like isoform X2 [Cucurbita moschata]	[more]
XP_022925144.1	8.7e-30	96.15	DNA helicase INO80-like isoform X3 [Cucurbita moschata]	[more]
XP_022966407.1	8.7e-30	96.15	DNA helicase INO80-like [Cucurbita maxima]	[more]

BLAST of CmaCh07G013390 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00860.1	3.5e-21	43.87	Chloroplast Ycf2;ATPase, AAA type, core	[more]
ATCG01280.1	3.5e-21	43.87	Chloroplast Ycf2;ATPase, AAA type, core	[more]
AT3G57300.1	1.8e-09	51.32	INO80 ortholog	[more]
AT3G57300.2	1.8e-09	51.32	INO80 ortholog	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008543	Uncharacterised protein family Ycf2	PFAM	PF05695	DUF825	coord: 1..52 e-value: 6.2E-21 score: 73.4 coord: 50..90 e-value: 4.9E-9 score: 34.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..141
None	No IPR available	PANTHER	PTHR33078:SF51	BNAA06G19290D PROTEIN	coord: 50..73
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 50..73
None	No IPR available	PANTHER	PTHR33078:SF51	BNAA06G19290D PROTEIN	coord: 1..52
None	No IPR available	PANTHER	PTHR33078	PROTEIN YCF2-RELATED	coord: 1..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G013390.1	CmaCh07G013390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0006281	DNA repair
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0031011	Ino80 complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0004386	helicase activity