CmaCh07G013370 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G013370
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionThreonine-tRNA ligase
LocationCma_Chr07: 7594617 .. 7597409 (-)
RNA-Seq ExpressionCmaCh07G013370
SyntenyCmaCh07G013370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAACCATTAAGCGGAGGGAGCCACGATCTCGAGCAGACCTTGAAGCCCTTCTATCAAAGAGCCTCCGAAGCCGAGGTTTGATTGCTAAACCCTTCACTTTTCTCCCATTTTCCCTTCTAAATCGGACGCCTTCTTAGGACGCGCCGCCTCTTATCTTTGTCGCATGGAATTTCTTTTTTGGGTGAAATTGACGGGTATGTTTTAGGTGTATTTCATTGCAATTACTTTGGATTACTGTTGAAATATTTGAAATGGCTGGGAAAATGAATGATGAAGTTTAGATTTATTCTCCTAGATTTTAGAAAGGGAGTTTAATTGAAGTTTTTGGCAGTCAAAGAGGTACTCCGATTAAGGATAATTTCCAGCTCTAGGGCAGTATGGAACTAATACTGACTCTTAAGTCGTATCATACCACTCGCTGGAAAAAGTGTCAAGCTGTACACTTATAATGCCTCTCTTAGACCATACTTTCAAACCACGGTGTATATGTATGTATGTATATATAATAATAAGCCCACCGCTAGCCTGAATTTTTTTTTTTAGGCTTTTCCTTTCGAGCTTCCCCTCGAGGTTTTAGAACGTGTCTGATAGGAAGAGGTTTCCACACGCTTATAAAGAATACTTCGTCGTCCTCCTCCTCAATTGATGTGGAGTCTCACAATTCACCCCACCTTCAGGGCTAGCGTTCTCGTTGGCACTCATTTCCTTCTCCAATCAATTGGAACCCCCCAATCCACTTCCCTTTGAGGTTCAACGTCCTTGCTGCCACATCATCCGGTGTCTAGCTCTGATACTATTTGTAACGGCTCAAGCACATTGCTAGTAGATATTGTCTTTTTTGGTCTTTTCCCTCAAGATTTTAAAATGCGTTTGCTAAGGAGAGGTTTCCATATCCTTATAAAGAATGCTTCGTTCTCTTCCCCGACCGATGTAGGATCTCATAATATATATGCTTGTGTGTTATAAGATTTAATGCAGAGCTATGCATTTGTAAGGCGAGCAGATTTTTAGTGTGATAGGCTGAGATGTGTATAAGATAGTTCAAACATTCATTGTTGTCACAAAAAATCATATTTAGCCATATCAAAGTGTTAAGAGTACTATGATACCCGATCATCATGAGATAGCCTAGTACTTGCTTGTCGGGTTGGAACAAGTAAAAAAAAAAAAAAGTGGACCTTGGAGGGAATTGATTCAAACCCCGTAGTAGCCCTATCCATATCTTAAGATATTAAAATCTTACAAATTTTTTTAACACAAAATGTTGTAGGACGATGGATTGTTCCATGAAATTAGTCAAGGTGTTCACAATCATACTATGCACAAGTCCACTGCCAGCCGATATTGTCCTTTTTAGGCTTTCCTTTCAAGGTTTTAAAAATGCGTATGCTAGGGAGAGGTTTCCACACCCTAATAAGGAATGTTTCGTTCCCATTTTCAACCAATGTGGAATCTCATAATCCACCCCCTTGGGGCCCAATGTTCTTGTTGGCATACCACCCGGTATTTGGTTCTAATACCATTTGTAACAGCCCAAGTCTACCACTAGCAGATGTTGTCCTTTTTAGGCCTTCCCTTCAAGGTTTTGAAATGTCTGTTAGGTTCCACACCCTTCCCCTCTTGAACCAATGTGGAATCTCACATTTTCCCTCTTTTTCTATTTCTATGTAATTCTATTTTTAAAATGTGCAAGAGTAACAATGCACAAAAATTTGGAGGCTAAATGCAGAGCTAGGCATTTGTATGCCCCAGTTTAGGTCTACAAGATATATGTTGAAGACTCGGACCAAAAACTGACCTTTTCAAATAGATAAAGGCTGCAAAATTTGTTGTCTGAGACTGACTAAGAAAACCAAGTGGTTAAGTTGTTGTCTTTAGTAGTAGATTAGTTGTCACTTGTAGTCATTAGGCATATAAGAGGCGGAGAAGCCTTACGAGGGATACTGATCGAACTCGAAACATATTGCAATGTAAACAAGAAAACGAACTACAGTATTTGAGGTACTCGGAACCTCCCCTCACTTGAGCATACTAACTCGAGCCTTAATCCAACTAACTTCCTTCTTTCCTACTCTATCTGTTTATAACAAAATACATTAACTACTTCTCTAACTAGTTGCTAATATACCTTTAATACTCTTATAACATTCCTATCAGACAGAACATGATATGTAGAGAGTGAGGTGAAATTATTTTTAATCTTGTGCCTTGATTTGGTATCAAGTTTTAAAGATTTTTTCTGAAAGTTTAGTTGATTTTGGTCTACTGTTATTATGTATTCGTACTTACGACAATGCGCTTTTATTTAAAGGATCGTTTGTCGAGACTAGAAGCTGCGCTTTTGAGTAAGAAAGGTACGACTCATGGCTGTTTCCCTTTTAGAGAAACCATACTTTCATAGAGCAAATGAAAGAATTAACTCATGGGTAATTTTTATTTTATTGGAACCACACCAAATCACCAATGACACAAACATGTATGAATGTGTTTCTGATTATCAACAACTCGTCCATCTAGATGCCCACGACGAGGAACATCTTAAAACGATAAGCGAACTCCAGTCGAAGCTAGACAGCGCAAATGAAGCGCTAATCGCAGAACAGAAAAAGGCAAGAAGTATTTGTTTGTTGTTTGTCCATGGTTAGATGAAGAGGTCAAAAAGAAAAGAAAGAAAAAAGGAAGTTCTTAATTGGGATTATTTTGCAGGCTGAGATGGTTGCTGCAGAAAATGCAAAGCTCCAGTATCGCATACTCCATCTTGTGAGGGCAGCAAGGGGAACACATTAA

mRNA sequence

ATGGCGGAACCATTAAGCGGAGGGAGCCACGATCTCGAGCAGACCTTGAAGCCCTTCTATCAAAGAGCCTCCGAAGCCGAGGATCGTTTGTCGAGACTAGAAGCTGCGCTTTTGAGTAAGAAAGATGCCCACGACGAGGAACATCTTAAAACGATAAGCGAACTCCAGTCGAAGCTAGACAGCGCAAATGAAGCGCTAATCGCAGAACAGAAAAAGGCTGAGATGGTTGCTGCAGAAAATGCAAAGCTCCAGTATCGCATACTCCATCTTGTGAGGGCAGCAAGGGGAACACATTAA

Coding sequence (CDS)

ATGGCGGAACCATTAAGCGGAGGGAGCCACGATCTCGAGCAGACCTTGAAGCCCTTCTATCAAAGAGCCTCCGAAGCCGAGGATCGTTTGTCGAGACTAGAAGCTGCGCTTTTGAGTAAGAAAGATGCCCACGACGAGGAACATCTTAAAACGATAAGCGAACTCCAGTCGAAGCTAGACAGCGCAAATGAAGCGCTAATCGCAGAACAGAAAAAGGCTGAGATGGTTGCTGCAGAAAATGCAAAGCTCCAGTATCGCATACTCCATCTTGTGAGGGCAGCAAGGGGAACACATTAA

Protein sequence

MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLDSANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH
Homology
[Close]
BLAST of CmaCh07G013370 vs. ExPASy TrEMBL
Match: A0A6J1HN54 (uncharacterized protein LOC111466136 OS=Cucurbita maxima OX=3661 GN=LOC111466136 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.8e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD
Sbjct: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 99
          SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH
Sbjct: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 98

[Close]
BLAST of CmaCh07G013370 vs. ExPASy TrEMBL
Match: A0A6J1EAW7 (uncharacterized protein LOC111432443 OS=Cucurbita moschata OX=3662 GN=LOC111432443 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.2e-41
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEPLSGGSHDLEQTLKPFY+RASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD
Sbjct: 1  MAEPLSGGSHDLEQTLKPFYRRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGT 98
          SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGT
Sbjct: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGT 97

[Close]
BLAST of CmaCh07G013370 vs. ExPASy TrEMBL
Match: A0A6J1DM00 (uncharacterized protein LOC111021288 OS=Momordica charantia OX=3673 GN=LOC111021288 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-35
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEPL GG HDLEQ+LKPF+QRASEAEDRLSRLEA LLSKKD  DEEHLKTI+ELQSKLD
Sbjct: 1  MAEPLRGGGHDLEQSLKPFFQRASEAEDRLSRLEATLLSKKDTWDEEHLKTIAELQSKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 99
          SANEALIAE+KKAE+VAAENAKLQYRI+HLVR AR  H
Sbjct: 61 SANEALIAERKKAEIVAAENAKLQYRIIHLVRTAREAH 98

[Close]
BLAST of CmaCh07G013370 vs. ExPASy TrEMBL
Match: A0A1S3CLW0 (uncharacterized protein LOC103502450 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502450 PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.6e-35
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEP  GG+HDLEQTLKPF+QRAS+AEDRLSRLEAALLSKKD H+EEHLKTISELQ+KLD
Sbjct: 1  MAEPHGGGNHDLEQTLKPFFQRASQAEDRLSRLEAALLSKKDDHNEEHLKTISELQTKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 99
          SAN ALI E+KKAEMVA ENAKLQYRI+HLVR AR TH
Sbjct: 61 SANNALIEERKKAEMVAEENAKLQYRIIHLVRTARETH 98

[Close]
BLAST of CmaCh07G013370 vs. ExPASy TrEMBL
Match: A0A1S3CM07 (uncharacterized protein LOC103502450 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502450 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.9e-24
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEP  GG+HDLEQTLKPF+QRAS+AEDRLSRLEAALLSKKD H+EEHLKTISELQ+KLD
Sbjct: 1  MAEPHGGGNHDLEQTLKPFFQRASQAEDRLSRLEAALLSKKDDHNEEHLKTISELQTKLD 60

Query: 61 SANEALIAEQKKAEMVAA 79
          SAN ALI E+KKA ++ A
Sbjct: 61 SANNALIEERKKASIIGA 78

[Close]
BLAST of CmaCh07G013370 vs. NCBI nr
Match: XP_022966502.1 (uncharacterized protein LOC111466136 [Cucurbita maxima] >XP_023518486.1 uncharacterized protein LOC111781969 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 183.3 bits (464), Expect = 9.8e-43
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD
Sbjct: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 99
          SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH
Sbjct: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 98

[Close]
BLAST of CmaCh07G013370 vs. NCBI nr
Match: KAG6595681.1 (hypothetical protein SDJN03_12234, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 181.8 bits (460), Expect = 2.9e-42
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEPLSGGSHDLEQTLKPFY+RASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD
Sbjct: 1  MAEPLSGGSHDLEQTLKPFYRRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 99
          SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH
Sbjct: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 98

[Close]
BLAST of CmaCh07G013370 vs. NCBI nr
Match: XP_022925102.1 (uncharacterized protein LOC111432443 [Cucurbita moschata])

HSP 1 Score: 178.7 bits (452), Expect = 2.4e-41
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEPLSGGSHDLEQTLKPFY+RASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD
Sbjct: 1  MAEPLSGGSHDLEQTLKPFYRRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGT 98
          SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGT
Sbjct: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGT 97

[Close]
BLAST of CmaCh07G013370 vs. NCBI nr
Match: XP_022153876.1 (uncharacterized protein LOC111021288 [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 3.4e-35
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEPL GG HDLEQ+LKPF+QRASEAEDRLSRLEA LLSKKD  DEEHLKTI+ELQSKLD
Sbjct: 1  MAEPLRGGGHDLEQSLKPFFQRASEAEDRLSRLEATLLSKKDTWDEEHLKTIAELQSKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 99
          SANEALIAE+KKAE+VAAENAKLQYRI+HLVR AR  H
Sbjct: 61 SANEALIAERKKAEIVAAENAKLQYRIIHLVRTAREAH 98

[Close]
BLAST of CmaCh07G013370 vs. NCBI nr
Match: XP_008464609.1 (PREDICTED: uncharacterized protein LOC103502450 isoform X2 [Cucumis melo])

HSP 1 Score: 157.1 bits (396), Expect = 7.5e-35
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 0 

Query: 1  MAEPLSGGSHDLEQTLKPFYQRASEAEDRLSRLEAALLSKKDAHDEEHLKTISELQSKLD 60
          MAEP  GG+HDLEQTLKPF+QRAS+AEDRLSRLEAALLSKKD H+EEHLKTISELQ+KLD
Sbjct: 1  MAEPHGGGNHDLEQTLKPFFQRASQAEDRLSRLEAALLSKKDDHNEEHLKTISELQTKLD 60

Query: 61 SANEALIAEQKKAEMVAAENAKLQYRILHLVRAARGTH 99
          SAN ALI E+KKAEMVA ENAKLQYRI+HLVR AR TH
Sbjct: 61 SANNALIEERKKAEMVAEENAKLQYRIIHLVRTARETH 98

[Close]
BLAST of CmaCh07G013370 vs. TAIR 10
Match: AT3G57320.1 (unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 73.9 bits (180), Expect = 7.8e-14
Identity = 44/87 (50.57%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 10 HDLEQTLKPFYQRASEAEDRLSRLEAALLS-KKDAHDEEHLKTISELQSKLDSANEALIA 69
          H L + LKPF+ RA+EA++RL++LEAAL S K D  D + ++   +LQSKL+ AN  +  
Sbjct: 5  HHLPENLKPFFHRATEAQERLAKLEAALASTKTDIPDAKLVEENKQLQSKLEEANATVKQ 64

Query: 70 EQKKAEMVAAENAKLQYRILHLVRAAR 96
          EQ K + +  ENAK +YRILHLVRA +
Sbjct: 65 EQTKVKDLTIENAKHKYRILHLVRALK 91

[Close]
BLAST of CmaCh07G013370 vs. TAIR 10
Match: AT3G57320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 17 Blast hits to 17 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 2.4e-07
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 0 

Query: 10 HDLEQTLKPFYQRASEAEDRLSRLEAALLS-KKDAHDEEHLKTISELQSKLDSANEALIA 69
          H L + LKPF+ RA+EA++RL++LEAAL S K D  D + ++   +LQSKL+ AN  +  
Sbjct: 5  HHLPENLKPFFHRATEAQERLAKLEAALASTKTDIPDAKLVEENKQLQSKLEEANATVKQ 64

Query: 70 EQKK 73
          EQ K
Sbjct: 65 EQTK 68

The following BLAST results are available for this feature:
BLAST of CmaCh07G013370 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G013370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HN544.8e-43100.00uncharacterized protein LOC111466136 OS=Cucurbita maxima OX=3661 GN=LOC111466136... [more]
A0A6J1EAW71.2e-4198.97uncharacterized protein LOC111432443 OS=Cucurbita moschata OX=3662 GN=LOC1114324... [more]
A0A6J1DM001.6e-3585.71uncharacterized protein LOC111021288 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A1S3CLW03.6e-3584.69uncharacterized protein LOC103502450 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3CM072.9e-2480.77uncharacterized protein LOC103502450 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of CmaCh07G013370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022966502.19.8e-43100.00uncharacterized protein LOC111466136 [Cucurbita maxima] >XP_023518486.1 uncharac... [more]
KAG6595681.12.9e-4298.98hypothetical protein SDJN03_12234, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022925102.12.4e-4198.97uncharacterized protein LOC111432443 [Cucurbita moschata][more]
XP_022153876.13.4e-3585.71uncharacterized protein LOC111021288 [Momordica charantia][more]
XP_008464609.17.5e-3584.69PREDICTED: uncharacterized protein LOC103502450 isoform X2 [Cucumis melo][more]
BLAST of CmaCh07G013370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G57320.17.8e-1450.57unknown protein; Has 30 Blast hits to 30 proteins in 13 species: Archae - 0; Bac... [more]
AT3G57320.22.4e-0748.44unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 23..43
NoneNo IPR availableCOILSCoilCoilcoord: 52..72
NoneNo IPR availablePANTHERPTHR38377THREONINE-TRNA LIGASE 2coord: 8..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G013370.1CmaCh07G013370.1mRNA