CmaCh07G013210 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G013210
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	40S ribosomal protein S28
Location	Cma_Chr07: 7484531 .. 7486461 (+)
RNA-Seq Expression	CmaCh07G013210
Synteny	CmaCh07G013210

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCCGAAATTTGGGCCTCGCTGCTGAAATCCGAATCCTTTGTATAAACAGAAAAACCTCAAATATAACCGAAAACCACAGATTTGGCCGCCGCTTCATACACTCTGCCCGTGAGATTTCGAATCCCAACTCTGCAAAATCCTTCGCCGACGGTTTGTTTTCTTAATATCTCTGTCTTTTCGTTTCAATCTGTTCTGTTTTTCAATTATATTGGGTAAAAGAAGAAGAAGAAGGAGAAGAACTTGGCTTTTTATGTTTTTCCTTTTCCTTTTGTGATTCGTTATCATTATGAGTTTCCATTTAATGTATGGTTGCTTAGTTTGTTGTTGTTTTAAATATTGACAGTTGATTCTCGTTTTCTGGATGTTGGGTTCGTTCTTTCTTTGGTACTGAAAGATCGTTGTCGTAATCCTATATTAGAATTTGACTCGGAGGTTCTTAGTATTGAATCATTCATGAACTTGTAGATTGTATATTGTTGCTGGTTCTGAGCGAGAGAGACATTTGGGCATGACTATGTTAGGCTTTTATCGTGCATGTCAACGTGAATATGTGCAGTTTGGGGTTAAATTTGTATGAAATTATTGAAGAAAAGAGCGAAGCTAGGCTAAGGTCTCGGTGAAACTTCCTTAGAAATCTCAGGAAAGAGTTGGTAAGTTACTAGATTAGGTTTTTCCTGCATCAGGTTAATTTTGAAACATTGTTTAACTGTACATAGAATGAAGAAGAAATCTCAAGTTTTGATATTGTAGACTACAAATTTGATGAACTTTGATATAATATATGAAAAAATAATATTATTAATTGAGATCATGAGAATTGTGATTGAGAGGGGAAGTCATGACGCCGTAGAGGTAATAGGACCTTCTTAAATGACTCGAAATGAAATTTATAAAAAGCGACAATAAATATCGTTCAGAATTGCCTTTTAGGCATTCAACATTCTGCCATTAAATCTTTGTTTCTCTTTGAATAAAAGTTACTTAGTAGCTACTTAGTAGAATTACTCCTGCAGTCTAGGAACGTACCGTTATAAGTAAGAATTTGAGAAGGTTTCTCTCAACACTTTGATTTCATTTAACCATTTACCTACACAAAATGTACACCAGTTGGGTAAAGGGATATTGAGGTCTATTTCACTTTCCAAGAACATCGTCCCTCATTCATATGGAGAATTTGAATCCTTTCAGAAACTTGTGCCCCAAGATGGCCCTCATAGGAGTTGTCATGGGTGGCAATGAGAACGTCAATAAGGATTTGCAGTAAAGGGCATCTCCTAGAATATCTCTGATTAATGTTAAGGCAGTAAAGGGCGATGATGCTTCTTTTTCATCTATGATTTTCCACTGAAGTTTAATCTCAGAGCATATGAATTTTGTTCTCTTATTATATGGCAATGTACTACTTGAAATTGATTTGAATTTTATGATTTAAGCATTTGAGAACCATCCTTCTGGCATGCATTTGGACAAATGCACACTTTGTTGTTTCCTTCCGGTGTAGCTTTTAAGAAAGTTCTATGTGGCTTGCTGTTTTTGTTGGGTTTTCTTCACATTCTCTTTTTTTTTCAACCTCATCCATGGCAGTTGCTACATGTAATCTGCAAAAGATCTGTTCATAGATGGTATAAAGTTATAAACTGAAAACAACATCATATCTCCTAATTGATCGTTAAAATGCCTCTAATTTCCAGGTTCCTCTCCAATCTCATCACCTCTATTCATTTAAGAAATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAAAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTCCTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGCTGA

mRNA sequence

ATGGGCCGAAATTTGGGCCTCGCTGCTGAAATCCGAATCCTTTGTATAAACAGAAAAACCTCAAATATAACCGAAAACCACAGATTTGGCCGCCGCTTCATACACTCTGCCCGTGAGATTTCGAATCCCAACTCTGCAAAATCCTTCGCCGACGAAATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAAAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTCCTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGCTGA

Coding sequence (CDS)

ATGGGCCGAAATTTGGGCCTCGCTGCTGAAATCCGAATCCTTTGTATAAACAGAAAAACCTCAAATATAACCGAAAACCACAGATTTGGCCGCCGCTTCATACACTCTGCCCGTGAGATTTCGAATCCCAACTCTGCAAAATCCTTCGCCGACGAAATGGAATCCCAAATCAAACACGCTGTGGTGGTCAAAGTAATGGGTAGAACTGGATCAAGAGGGCAAGTGACGCAAGTGAGAGTTAAGTTTCTCGACGATCAAAATCGATACATCATGAGGAATGTCAAGGGACCTGTGAGGGAAGGTGACATTCTTACTCTCCTAGAGTCTGAGAGAGAAGCCAGGAGGTTGCGCTGA

Protein sequence

MGRNLGLAAEIRILCINRKTSNITENHRFGRRFIHSAREISNPNSAKSFADEMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of CmaCh07G013210 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-24
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1   MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh07G013210 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.0e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh07G013210 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.4e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh07G013210 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 116
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 117 R 118
           R
Sbjct: 69  R 69

[Close]

BLAST of CmaCh07G013210 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 57  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 116
           IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9   IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 117 R 118
           R
Sbjct: 69  R 69

[Close]

BLAST of CmaCh07G013210 vs. ExPASy TrEMBL
Match: A0A068U8S9 (Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00019765001 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-28
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 13  ILCINRKTSNITENHRFGRRFIHSAREISNPNSAKSFA---DEMESQIKHAVVVKVMGRT 72
           ILCIN  T + +        +  +A  +SNP+S  S     D M+SQIKHAVVVKVMGRT
Sbjct: 14  ILCINMATRDFSSP---ALSYSAAAPSLSNPSSPPSLVSAFDRMDSQIKHAVVVKVMGRT 73

Query: 73  GSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           GSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 74  GSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDVLTLLESEREARRLR 118

[Close]

BLAST of CmaCh07G013210 vs. ExPASy TrEMBL
Match: A0A6J1C0B5 (40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.4e-27
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 31  RRFIHSAREISNPNSAKSFADEMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYI 90
           RR   S+  +  P  +  FA  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYI
Sbjct: 34  RRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYI 93

Query: 91  MRNVKGPVREGDILTLLESEREARRLR 118
           MRNVKGPVREGDILTLLESEREARRLR
Sbjct: 94  MRNVKGPVREGDILTLLESEREARRLR 120

[Close]

BLAST of CmaCh07G013210 vs. ExPASy TrEMBL
Match: W9RZ99 (Nicotinamide mononucleotide adenylyltransferase 1 OS=Morus notabilis OX=981085 GN=L484_004025 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 43  PNSAKSFADEMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD 102
           PN   S    MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD
Sbjct: 201 PNQISSTRVRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD 260

Query: 103 ILTLLESEREARRLR 118
           ILTLLESEREARRLR
Sbjct: 261 ILTLLESEREARRLR 275

[Close]

BLAST of CmaCh07G013210 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh07G013210 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 4.8e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh07G013210 vs. NCBI nr
Match: CDP04901.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 135.2 bits (339), Expect = 3.7e-28
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 13  ILCINRKTSNITENHRFGRRFIHSAREISNPNSAKSFA---DEMESQIKHAVVVKVMGRT 72
           ILCIN  T + +        +  +A  +SNP+S  S     D M+SQIKHAVVVKVMGRT
Sbjct: 14  ILCINMATRDFSSP---ALSYSAAAPSLSNPSSPPSLVSAFDRMDSQIKHAVVVKVMGRT 73

Query: 73  GSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR 118
           GSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD+LTLLESEREARRLR
Sbjct: 74  GSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGDVLTLLESEREARRLR 118

[Close]

BLAST of CmaCh07G013210 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 9.0e-27
Identity = 71/87 (81.61%), Postives = 74/87 (85.06%), Query Frame = 0


Query: 31  RRFIHSAREISNPNSAKSFADEMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYI 90
           RR   S+  +  P  +  FA  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYI
Sbjct: 34  RRRRLSSFAVRPPPVSLVFASRMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYI 93

Query: 91  MRNVKGPVREGDILTLLESEREARRLR 118
           MRNVKGPVREGDILTLLESEREARRLR
Sbjct: 94  MRNVKGPVREGDILTLLESEREARRLR 120

[Close]

BLAST of CmaCh07G013210 vs. NCBI nr
Match: EXB79987.1 (Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis])

HSP 1 Score: 129.0 bits (323), Expect = 2.6e-26
Identity = 66/75 (88.00%), Postives = 68/75 (90.67%), Query Frame = 0


Query: 43  PNSAKSFADEMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGD 102
           PN   S    MESQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGD
Sbjct: 201 PNQISSTRVRMESQVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRFIMRNVKGPVREGD 260

Query: 103 ILTLLESEREARRLR 118
           ILTLLESEREARRLR
Sbjct: 261 ILTLLESEREARRLR 275

[Close]

BLAST of CmaCh07G013210 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 45  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 104

Query: 113 ARRLR 118
           ARRLR
Sbjct: 105 ARRLR 109

[Close]

BLAST of CmaCh07G013210 vs. NCBI nr
Match: KGN63808.2 (hypothetical protein Csa_014218 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.0e-25
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 65

[Close]

BLAST of CmaCh07G013210 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh07G013210 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-25
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

[Close]

BLAST of CmaCh07G013210 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 53  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 112
           M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1   MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 113 ARRLR 118
           ARRLR
Sbjct: 61  ARRLR 64

The following BLAST results are available for this feature:

BLAST of CmaCh07G013210 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	1.1e-24	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	2.0e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	7.4e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	1.1e-19	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	1.1e-19	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of CmaCh07G013210 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A068U8S9	1.8e-28	69.44	Uncharacterized protein OS=Coffea canephora OX=49390 GN=GSCOC_T00019765001 PE=3 ...	[more]
A0A6J1C0B5	4.4e-27	81.61	40S ribosomal protein S28-1-like OS=Momordica charantia OX=3673 GN=LOC111006903 ...	[more]
W9RZ99	1.3e-26	88.00	Nicotinamide mononucleotide adenylyltransferase 1 OS=Morus notabilis OX=981085 G...	[more]
A0A6J1HTG7	4.8e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]
A0A0A0LPR2	4.8e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1	[more]

BLAST of CmaCh07G013210 vs. NCBI nr


Match Name	E-value	Identity	Description
CDP04901.1	3.7e-28	69.44	unnamed protein product [Coffea canephora]	[more]
XP_022134697.1	9.0e-27	81.61	40S ribosomal protein S28-1-like [Momordica charantia]	[more]
EXB79987.1	2.6e-26	88.00	Nicotinamide mononucleotide adenylyltransferase 1 [Morus notabilis]	[more]
XP_022922061.1	1.0e-25	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
KGN63808.2	1.0e-25	100.00	hypothetical protein Csa_014218 [Cucumis sativus]	[more]

BLAST of CmaCh07G013210 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	1.4e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	1.4e-25	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	5.3e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 56..116 e-value: 7.2E-32 score: 109.2
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 53..117
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 49..117 score: 21.440229
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 58..117 e-value: 2.51183E-32 score: 106.18
None	No IPR available	GENE3D	2.40.50.140		coord: 50..117 e-value: 1.4E-36 score: 126.1
None	No IPR available	PANTHER	PTHR10769:SF3	40S RIBOSOMAL PROTEIN S28	coord: 53..117
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 108..116
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 53..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G013210.1	CmaCh07G013210.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006508	proteolysis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome