CmaCh07G012910 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G012910
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr07: 7277233 .. 7279138 (-)
RNA-Seq ExpressionCmaCh07G012910
SyntenyCmaCh07G012910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGACCCGCAGCGGTGGTGAGCACAATTCCAACGATTCATCCATAAACAATCATTAATTACATAGCTTTTTGTTCAAATTCCAAATCCGAGAAGATACAGGCACAGCCAAGTTCCGGTTCTCGTGGGATGGAGGTTTGTTTTTTCTTTAATCCCTTTTTGAATTCCATTTCTGTTTTTTGTTTTTAATTTCGTATCGATTTTTTCACTTTCGAGCCACTCCAGAATTTATTATTTGAATTGATCGTCTGTTTCTGCAATTGCGCTTGGAATTGTCAACTGGGGATATGTGTGTTTTTGTTTTATTTTCTAGATTTTCTTCTGTTGTTGTTGGTTTTCGTGGTATTCTGTTTTTCTTTCTGGAGACTTGTAAATGGAGGTCTTGTTTTATTTCGTTCCTCAGCTTTCGTGCAATTCTTGTTTCGTTCTTGGATATTGATTTTCTAATGCTGAAATGGTTTATCAATTTGTAATTTGTTAAAGGGGAGGGACAGGTACTTGGATTTGCGCTGCCTGGCCTAATTTCTTTTCGATTTGAAGACTCTTTTGAGGACTTCTCGGTTGGTAAGTTAGTTTTAATCACATCACTTCGGAATTTGAGAGAAATTTGATCTGATTGGCGTATGATTCTCTAAATTGATGTTTGTTTGTTTTACTATGTTGTTCTGGATGGATTCAAATGAGCCAATGATTTCATTAGGTGATTTATCACTCTAATTTTCCGAGCATTTGATGTGAACTGCAATTTATTGTATGTTTATGTTATTTTACTTTCCCTTTTCTATAGAAGGTATGCCATCATACATTTTCCCATTCATGCTTTATTACTTTTCCTTTCTATTTTTCATCCCAAAACGAAATGATAATGTTAAATCACTTTAGGATGTTTCTTTTTGTGTCCACGATTGGACGCCTTTATACTTGCCAAACTTTGATTTTAATGGGTATTGTATCGTTTTTTCTTGTTTATTTTTTCTTGGGGAGAAAATCATGAGGGGTCAAATTTTACATTTAACTCTTTTTCTTTTATTTTTAATGTACACACTTTCAATTTTAAAATTAAAGATGGAGAAAATTAGAGGGCTTTTTTAAATAATAATTTTTGTATAATTATTTGAATTTAAGATTGGATCTTCCTTTGTCCTCGACTTTGCCTCTGGTTCTTTCATTATCCAGAAAAATAATGATTCAGGTGATGGTGGCAGTTTGGAGGGTAGAAAGATTGAATAGAAAATGTTATCTACATTTGTTTGCGGGTCAGGAAAGTTTATAGAATAACATAGTCCCCAGAGATGATTAATAATAATATTATGAAGTTGATTTCTCTGTGTTTTGAAGCAGTTTTTTTGCCAATAAAAGCCGGGATGTGTTTTGGCACAATCGAAAGTTAAGCTAAGATGTTAAATTCATAGTTTCGATAAGCTTGGACTGGTTAAGTTTGGGGTTGGAAGTTGGAGCTTGGATTGCACAAAATAGTGCGCTGTATAAACTTGATGTTTTTACAATTAGAGTTTGCTTTGTATATTTATAATTTTATAAATTTTCATATGTACTATAAAAGATTGGTTTCAAACTCTGAATTTGTGTAATTTGTAGCATTTGTGAACTTATAGCTTGGAATAATTATGTCAGTATCCTAACCCATGACATATACGGCATCATTTATCAGTTTGGATTTCAAAAAAATGAAGTTGTTGCTAAGTCCTATACATTATTAAGCCTTGTTGATCATATTTAGTTTTCATTATCGCTTGGCATTCGCCCAAATTACGTAAGCAAGTCTCCAGACAACATGAAGCGTTCTACTTAATATCTTTACTGATATACCATTTTTTTTGTGTGGTTTAACAGGATTGAACTTGTGGATGGGTGATGGTTGGCATATAGTTAGGAGTTTTTGTTAA

mRNA sequence

ATGGCGGACCCGCAGCGCTTTTTGTTCAAATTCCAAATCCGAGAAGATACAGGCACAGCCAAGTTCCGGTTCTCGTGGGATGGAGGGGAGGGACAGGTACTTGGATTTGCGCTGCCTGGCCTAATTTCTTTTCGATTTGAAGACTCTTTTGAGGACTTCTCGATTGGATCTTCCTTTGTCCTCGACTTTGCCTCTGGTTCTTTCATTATCCAGAAAAATAATGATTCAGGTGATGGTGGCAGTTTGGAGGGATTGAACTTGTGGATGGGTGATGGTTGGCATATAGTTAGGAGTTTTTGTTAA

Coding sequence (CDS)

ATGGCGGACCCGCAGCGCTTTTTGTTCAAATTCCAAATCCGAGAAGATACAGGCACAGCCAAGTTCCGGTTCTCGTGGGATGGAGGGGAGGGACAGGTACTTGGATTTGCGCTGCCTGGCCTAATTTCTTTTCGATTTGAAGACTCTTTTGAGGACTTCTCGATTGGATCTTCCTTTGTCCTCGACTTTGCCTCTGGTTCTTTCATTATCCAGAAAAATAATGATTCAGGTGATGGTGGCAGTTTGGAGGGATTGAACTTGTGGATGGGTGATGGTTGGCATATAGTTAGGAGTTTTTGTTAA

Protein sequence

MADPQRFLFKFQIREDTGTAKFRFSWDGGEGQVLGFALPGLISFRFEDSFEDFSIGSSFVLDFASGSFIIQKNNDSGDGGSLEGLNLWMGDGWHIVRSFC
Homology
[Close]
BLAST of CmaCh07G012910 vs. NCBI nr
Match: KAG6595628.1 (hypothetical protein SDJN03_12181, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-24
Identity = 62/94 (65.96%), Postives = 64/94 (68.09%), Query Frame = 0 

Query: 7    FLFKFQIREDTGTAKFRFSWDGGEGQVLGFALPGLISFRFEDSFEDFSIGSSFVLDFASG 66
            FLFKFQIREDTGTAKFRFSWDGGE QVLGFALPGLISFRF+DSFEDFS+           
Sbjct: 1272 FLFKFQIREDTGTAKFRFSWDGGEEQVLGFALPGLISFRFQDSFEDFSV----------- 1331

Query: 67   SFIIQKNNDSGDGGSLEGLNLWMGDGWHIVRSFC 101
                             GLNLWMGD WHIVRSFC
Sbjct: 1332 -----------------GLNLWMGDCWHIVRSFC 1337

The following BLAST results are available for this feature:
BLAST of CmaCh07G012910 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G012910 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G012910 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595628.12.1e-2465.96hypothetical protein SDJN03_12181, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CmaCh07G012910 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G012910.1CmaCh07G012910.1mRNA