CmaCh07G012190 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G012190
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionhigh mobility group B protein 6-like
LocationCma_Chr07: 6696877 .. 6700634 (+)
RNA-Seq ExpressionCmaCh07G012190
SyntenyCmaCh07G012190
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATCGAAAAGCAGCCTCTCCCACTCTTCTCTGTTCTTTTCTTTTTTTCTCTGTGATTCCATTTCTCTTCCTCTCCTTTTCTCCATCTCCGCCAATATGCAGTCCCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACGGAAGAATTCACTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGGGGAACAGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAGAACGAACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCTGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCAGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGGTAAACAATCTTTTTCGCGAGTTTGAAGTTTCGATCGGTTGTTCGTTTGCTTAATTTTGATTTGACTTGGATCAGAGGATTTCTCCGATGCGAAGTCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGTAAATTCCGATCTCTAACCTCGAAGCTATTTCTCGATTTCTAAGTTCCGGATTCATCTGCTTCAATGTAAAACCAATCAATAATTCTGCGATATTTTCAGGAATTTGAAACCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCGTCATAGGAATTTGAAGTCGTCTCAGTTTTGTTCGCCGATTTTGATTTTCCCCAATTTTTCGATTGCCTCTTCATCTTCTTTGGATTTCTTCAGAAAGTGGCATTCATTGATTCAAAGGTAAAAACGAAATCAATGTAATACCTCATTATGTTGTTCTCTTCATCATGATGGAAACCATGAGTTGTAATCAATATCACTCTTCATCTCCTTCACTTCATTTAATGTTTGAGACCGAAGAAATTCCAAATCGGTGTTAGTTCATGATTCTCTCTCGCCATTATCATCTGCATTGAATTTTCTGTGTGAGTTTATGAGATTGGGGGAGATTGATTCAAACATTCATTTAATTTGTTAGTCAGTTTTGTAATGAGACTACTCATCATAAATCAAGGAGTTCAAAGGAATTTTGATTTTTGAAGAAGAAAAACAAAAACGAAATAAAATCAATTGAAACGGACTAACATGAATTAAACACAAAATAAATAAACTAGAATGCGTTTTTTTCTTCTTTTTTTGCTCCTCTCTTCTTTTTTTTTATCTATACCTGGGAACGAACCCGTCCCAAATCTAGAATTAACTCGTGTTTTAGATCTAATGTTCGTTCCTTTTTCTCTTCCCCGAAAAACAATGGAGAAAAAGAAAAGAAAGAAGTAGGGTGTTTAATAGTTGTCGGGATGAATTTGAAAATGGGTGGATTTCGGGATTTGTTCAATTCCTTAAAGTCGAAGGATAACTTGTTGTTGTCTTACTTTGTGCTGTCAATTTCTATTTTGAATTTGTATAAAATCTCGCTATTCATTGTTCCGTGTCTCTACAGCAAATTCTATTGTCATTAAAACTCGAAATTTAAGGCATAGCCAAAAAACGCTAGCTAACTAGATTATCAAGCAATGACTCTACATCGATATTGTGTAAAACTTTTCAGTACAATACTGCAACGGTACGAGTTCAATATAATACAAACTAAAAATGTCAGAGCATTGTCTATACGAGAAACAGAAGGGAGTAGATGTTCGGTTTCAGTAGCTAAGAACCAAACAAACACTTATTTTATTTACCTCATTCTACGAACAAAAACCTTTAACCTATTTATTTACCTCGTGAAATATCGTTAATAAGAACACCAAAATAATTAAATAATTAAATGTCAAAATTGACGTTTTAAAATCCATAAACGTTTTAAGGAAATTAATTAAAGTTTTTAATTTGTTCAAATAAGTATGGGCCAAATAAAAAGGAATAAAATTAATACCCTTTTAAATAAGATTTCAAAGGAATATTCCAATTAATAACCCAATTTAAAAAATAAAAAATAAAAAATAAATATATTTTTTATTTTATAAAATTTGAATTAAATATAAATAAATATAAATAATACGAACTAATAATTATTTAGGTTAATAGCATATGAAACCAAACTACCATTTAATATTCAAATCAGTTCCATTTAGAATTGAATTAAATAAAAAACAATTTAAGAAACAAAAATCTATATTAAATTCATATTTTTAAAATTAAAAATTCAAAAGTAATTATAGAAAATTATTACTGAAACGAAAACTTTAACGCCTTAACGTTTTTTTATGGAGAGATAAATAATAAATTTTTAAACTGTTGAAAGGGTCGGTGATAATATATTTTTAGTAATTTTTATAAAAAAAAAAAAAACGTAATTATAATTTATTTATTTATTTGGAAAATTAAGGATAATTAATTAATGCGAAATTACAAATTAGGAATATTTTGTATAATTTAGAAGGGAAAAAAAAGAAAGAAGGGAAAGGAAGATAAGTTTGAGAGCGTAACAAGAACAAGGCTGGCAGGCTGCAAAAGGAAAAAGGACGAGACGGTGCCGTATTCACTGGAACAGCATTGATCGATCGATCGATCGAAACCATAGCTGTGTAAGAGCAGCCCAATTTCAATTTCAATTTCAATTTCGATTCCATTTCCATTTCCAAATGCAAAGCTTTTGATTTTGAATTGGTGGTTTTCCGATTCTCTCTCTCTCTGTCTCTCTCCGATTTCCTCGGACTCAGTACCTCTCTCTCTCTCCAATTCATTCCCATTTCAATGTCCTTTTTTCTATTCTTATCCCTCTTCCTCTTCTTCCCCAGTTCTTAATTTTTCCGTTTCCTTTTGGGTGTTTTTCGATCCTCCCGCCCCCCGATTTATCTCCGGTGACAGCGATTTCAGGTGGGTGTTCCCCGATCCGCCTCCCCTTCTTTTCTTCTTCTCTCACTTCTCTGCCATTTCGCTATTTGATTTTGTATTCAGTGCATTGAAGGGCGTCTGATCTCTCTGCGCTTCTACTTCGTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCGACCTTACTGGTACCTACCTCTGTTTTTCTTTTAATTCTTTCCTTTTCTTCATTGTTTACATCTTTTTTCTTTTGCCTTTTGTGTTTTTGTGATGATTACATATCTGGGTCTGATTCGATTGGGGCTTTTTTTCTGAAGGAAAAGAAAATTTAGGTTTATTTTGTTTTTTCAGGTTTAGGGCTGGTTATTAATTTGGGTTTGTCTCGTTTGCTATATAGGTTTTTGGCATTTCTTGCTTGGGGAGTCGTAGGGTGTTTGTTGTTATTTGGATCCACTAGAGGAAGTTGTCAATACATCCTCGAAAAGAGCTGTTTGTGCATCATTGATTCCTGTGTTCCTCTGTTGTAAACATGAGAGGCTGGTCTCTGATCTGAGTTTTTCTGAAAGGCAGGATTCTGAATGTGTTGCTATTGATAAGCCCTTCCATTATATTTCCCTGTTTTCACTTCCAAGCAGATGGATTTTATGTGTGTTTTTAATTGTTTTGACATTTAGTCGCTCAGGCTTGGACATTGTTCAACGGGAATTGATTTCTAGGAAGTACAAGAATATGGGTTTAGGAGGATGA

mRNA sequence

AAATCGAAAAGCAGCCTCTCCCACTCTTCTCTGTTCTTTTCTTTTTTTCTCTGTGATTCCATTTCTCTTCCTCTCCTTTTCTCCATCTCCGCCAATATGCAGTCCCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACGGAAGAATTCACTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGGGGAACAGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAGAACGAACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCTGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCAGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGAGGATTTCTCCGATGCGAAGTCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGAATTTGAAACCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCAAAGTGGCATTCATTGATTCAAAGCTTTTGATTTTGAATTGGTGGTTTTCCGATTCTCTCTCTCTCTGTCTCTCTCCGATTTCCTCGGACTCAGTACCTCTCTCTCTCTCCAATTCATTCCCATTTCAATGTCCTTTTTTCTATTCTTATCCCTCTTCCTCTTCTTCCCCAGTTCTTAATTTTTCCGTTTCCTTTTGGGTGTTTTTCGATCCTCCCGCCCCCCGATTTATCTCCGGTGACAGCGATTTCAGGGCGTCTGATCTCTCTGCGCTTCTACTTCGTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCGACCTTACTGGTTTTTGGCATTTCTTGCTTGGGGAGTCGTAGGGTGTTTGTTGTTATTTGGATCCACTAGAGGAAGTTGTCAATACATCCTCGAAAAGAGCTGTTTGTGCATCATTGATTCCTGTGATTCTGAATGTGTTGCTATTGATAAGCCCTTCCATTATATTTCCCTGTTTTCACTTCCAAGCAGATGGATTTTATGTGTGTTTTTAATTGTTTTGACATTTAGTCGCTCAGGCTTGGACATTGTTCAACGGGAATTGATTTCTAGGAAGTACAAGAATATGGGTTTAGGAGGATGA

Coding sequence (CDS)

ATGCAGTCCCTTCTCCATCCCACGCATCTAGATCTTCATCTCAAGTCCGGCCGCCGCCCACTCCAACGGAAGAATTCACTCTCAAATCATGTTCCTGCAGTCGCCAAAATCGTCAAATCCAAGGGGGAACAGGTAGAGATCCCGCTATCCGGAGATGCCAATAAGGAGAACGAACCGCCGATTCACGCGACGGCGACGAGGACAGAGTCATGTGATTTGTCTCTGGCTGATGAACTCAATGCGGTTAAGATGAAGCTTGAGAGATTGAGATTAGACGGTGAACGGACGGAGAAAATGTTGAGAGAGAGGGATATGGTGTTGGAGATGCAGAGGAAGGAGATTTTGCAGAGAAGTGAGGTGCAGAGGGATCTGGAGATGGAGGTCGACAGGTTATTCAGATTGAAGGAACTCAGATCGTACTGTATGAGGATTTCTCCGATGCGAAGTCTCAGAGAGAAGGAGCGAGAGAAGATATTCACCGACTTACAATTTCAGGAATTTGAAACCAGCGACGAAGAAGAATCGATTGACGAGAATTCATCGTCGGATTCCTCAGAATTCAAAGTGGCATTCATTGATTCAAAGCTTTTGATTTTGAATTGGTGGTTTTCCGATTCTCTCTCTCTCTGTCTCTCTCCGATTTCCTCGGACTCAGTACCTCTCTCTCTCTCCAATTCATTCCCATTTCAATGTCCTTTTTTCTATTCTTATCCCTCTTCCTCTTCTTCCCCAGTTCTTAATTTTTCCGTTTCCTTTTGGGTGTTTTTCGATCCTCCCGCCCCCCGATTTATCTCCGGTGACAGCGATTTCAGGGCGTCTGATCTCTCTGCGCTTCTACTTCGTTTCATCAATTCCGAGACGATAACCCTTCTCTTTCATCGACCTTACTGGTTTTTGGCATTTCTTGCTTGGGGAGTCGTAGGGTGTTTGTTGTTATTTGGATCCACTAGAGGAAGTTGTCAATACATCCTCGAAAAGAGCTGTTTGTGCATCATTGATTCCTGTGATTCTGAATGTGTTGCTATTGATAAGCCCTTCCATTATATTTCCCTGTTTTCACTTCCAAGCAGATGGATTTTATGTGTGTTTTTAATTGTTTTGACATTTAGTCGCTCAGGCTTGGACATTGTTCAACGGGAATTGATTTCTAGGAAGTACAAGAATATGGGTTTAGGAGGATGA

Protein sequence

MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEVQRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENSSSDSSEFKVAFIDSKLLILNWWFSDSLSLCLSPISSDSVPLSLSNSFPFQCPFFYSYPSSSSSPVLNFSVSFWVFFDPPAPRFISGDSDFRASDLSALLLRFINSETITLLFHRPYWFLAFLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSCDSECVAIDKPFHYISLFSLPSRWILCVFLIVLTFSRSGLDIVQRELISRKYKNMGLGG
Homology
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BLAST of CmaCh07G012190 vs. ExPASy TrEMBL
Match: A0A6J1HS84 (high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466110 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 7.6e-92
Identity = 187/189 (98.94%), Postives = 188/189 (99.47%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60
           MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180

Query: 181 SSDSSEFKV 190
           SSDSSEF +
Sbjct: 181 SSDSSEFVI 189

[Close]
BLAST of CmaCh07G012190 vs. ExPASy TrEMBL
Match: A0A6J1EAP1 (high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC111432340 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 1.3e-86
Identity = 179/189 (94.71%), Postives = 183/189 (96.83%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRIS MRSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISSMRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFKV 190
           SSDSSEF +
Sbjct: 181 SSDSSEFVI 189

[Close]
BLAST of CmaCh07G012190 vs. ExPASy TrEMBL
Match: A0A5A7SJQ2 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1220G00510 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 3.9e-64
Identity = 146/193 (75.65%), Postives = 161/193 (83.42%), Query Frame = 0 

Query: 1   MQSLLH--PTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENE 60
           MQ+L H  P+  D+ LKSGRRPLQ KNSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNPVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE++ KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP+RSLREKEREKIFTD QF EFE  D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEFKVAF 192
           NSS DSSEF   F
Sbjct: 181 NSSLDSSEFVTGF 191

[Close]
BLAST of CmaCh07G012190 vs. ExPASy TrEMBL
Match: A0A5D3CEI7 (High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00430 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.2e-64
Identity = 146/193 (75.65%), Postives = 161/193 (83.42%), Query Frame = 0 

Query: 1   MQSLLH--PTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENE 60
           MQ+L H  P+  D+ LKSGRRPLQ KNSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE++ KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP+RSLREKEREKIFTD QF EFE  D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEFKVAF 192
           NSS DSSEF   F
Sbjct: 181 NSSLDSSEFVTGF 191

[Close]
BLAST of CmaCh07G012190 vs. ExPASy TrEMBL
Match: A0A1S3CJ78 (high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 5.2e-64
Identity = 146/193 (75.65%), Postives = 161/193 (83.42%), Query Frame = 0 

Query: 1   MQSLLH--PTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENE 60
           MQ+L H  P+  D+ LKSGRRPLQ KNSL N VP+VAKI+KSK E ++I LSGDANKEN 
Sbjct: 1   MQTLHHPLPSPRDIPLKSGRRPLQPKNSLPNLVPSVAKIIKSKPEIIQISLSGDANKENH 60

Query: 61  PPIHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRS 120
           PP  AT    ESCDLSLADELNAVK K+ERLRLDGERTEKMLRERD+VLE++ KE+LQRS
Sbjct: 61  PP--ATTVSIESCDLSLADELNAVKRKMERLRLDGERTEKMLRERDLVLELRMKELLQRS 120

Query: 121 EVQRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDE 180
           + QRDLEMEVDRLFRLKELRSYCMRISP+RSLREKEREKIFTD QF EFE  D EES+ E
Sbjct: 121 QEQRDLEMEVDRLFRLKELRSYCMRISPIRSLREKEREKIFTDAQFPEFEIGDGEESVGE 180

Query: 181 NSSSDSSEFKVAF 192
           NSS DSSEF   F
Sbjct: 181 NSSLDSSEFVTGF 191

[Close]
BLAST of CmaCh07G012190 vs. NCBI nr
Match: KAG6595551.1 (hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 473.0 bits (1216), Expect = 2.5e-129
Identity = 264/335 (78.81%), Postives = 267/335 (79.70%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFKVAFIDSKLLILNWWFSDSLSLCLSPISSDSVPLSLSNSFPFQCPFFYSYPSS 240
           SSDSSEF                                                     
Sbjct: 181 SSDSSEF----------------------------------------------------- 240

Query: 241 SSSPVLNFSVSFWVFFDPPAPRFISGDSDFRASDLSALLLRFINSETITLLFHRPYWFLA 300
                L FSVSFWVFFD PA RFISGDSDFRASDLS LLLRFINSETITLLFHR YWFLA
Sbjct: 241 ----FLIFSVSFWVFFDLPAARFISGDSDFRASDLSVLLLRFINSETITLLFHRTYWFLA 278

Query: 301 FLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSC 336
           FLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSC
Sbjct: 301 FLAWGVVGCLLLFGSTRGSCQYILEKSCLCIIDSC 278

[Close]
BLAST of CmaCh07G012190 vs. NCBI nr
Match: XP_022966463.1 (high mobility group B protein 6-like [Cucurbita maxima])

HSP 1 Score: 347.4 bits (890), Expect = 1.6e-91
Identity = 187/189 (98.94%), Postives = 188/189 (99.47%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60
           MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180

Query: 181 SSDSSEFKV 190
           SSDSSEF +
Sbjct: 181 SSDSSEFVI 189

[Close]
BLAST of CmaCh07G012190 vs. NCBI nr
Match: XP_023517579.1 (high mobility group B protein 6-like [Cucurbita pepo subsp. pepo] >XP_023518497.1 high mobility group B protein 6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 334.0 bits (855), Expect = 1.8e-87
Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKENEPP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENEPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFE SDEEESIDE S
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFEISDEEESIDEIS 180

Query: 181 SSDSSEFKV 190
           SSDSSEF +
Sbjct: 181 SSDSSEFVI 189

[Close]
BLAST of CmaCh07G012190 vs. NCBI nr
Match: KAG7027530.1 (hypothetical protein SDJN02_11544, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 330.9 bits (847), Expect = 1.5e-86
Identity = 179/189 (94.71%), Postives = 183/189 (96.83%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRISP RSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISPKRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFKV 190
           SSDSSEF +
Sbjct: 181 SSDSSEFVI 189

[Close]
BLAST of CmaCh07G012190 vs. NCBI nr
Match: XP_022924949.1 (high mobility group B protein 6-like [Cucurbita moschata])

HSP 1 Score: 330.1 bits (845), Expect = 2.6e-86
Identity = 179/189 (94.71%), Postives = 183/189 (96.83%), Query Frame = 0 

Query: 1   MQSLLHPTHLDLHLKSGRRPLQRKNSLSNHVPAVAKIVKSKGEQVEIPLSGDANKENEPP 60
           MQSLLHPTHLDLHLKSGRRPLQ +NSLSNHVPAVAKIVKSK E+VEIPLSGDANKEN PP
Sbjct: 1   MQSLLHPTHLDLHLKSGRRPLQPRNSLSNHVPAVAKIVKSKAERVEIPLSGDANKENVPP 60

Query: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEV 120
           IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEM+RKEILQRSEV
Sbjct: 61  IHATATRTESCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMRRKEILQRSEV 120

Query: 121 QRDLEMEVDRLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESIDENS 180
           QRDLEMEVDRLFRLKELRSYCMRIS MRSLREKEREKIFTDLQFQEFE SDEEESIDENS
Sbjct: 121 QRDLEMEVDRLFRLKELRSYCMRISSMRSLREKEREKIFTDLQFQEFEISDEEESIDENS 180

Query: 181 SSDSSEFKV 190
           SSDSSEF +
Sbjct: 181 SSDSSEFVI 189

[Close]
BLAST of CmaCh07G012190 vs. TAIR 10
Match: AT5G01910.1 (unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bacteria - 2; Metazoa - 18; Fungi - 7; Plants - 29; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 96.3 bits (238), Expect = 5.9e-20
Identity = 61/133 (45.86%), Postives = 85/133 (63.91%), Query Frame = 0 

Query: 70  SCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEVQRDLEMEVD 129
           S D SLA+EL+A K KLERLR D E TEK+L+ERD  +++    +LQR E Q+ LE++VD
Sbjct: 42  SIDASLAEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVD 101

Query: 130 RLFRLKELRSYCMRISPMRSLREKEREKIFTDLQFQEFETSDEEESID--ENSSSDSSEF 189
           RLFRLKEL +Y  +ISP+RSLR KE+++      F   E  DEE S++       + S  
Sbjct: 102 RLFRLKELHAYSSKISPIRSLRAKEQQEKMRRFTFAGEEQPDEESSVEIANGPIEEESST 161

Query: 190 KVAFIDSKLLILN 201
           K   ++  ++I N
Sbjct: 162 KSNVLERDMIIAN 174

[Close]
BLAST of CmaCh07G012190 vs. TAIR 10
Match: AT5G01910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 6.5e-19
Identity = 51/88 (57.95%), Postives = 68/88 (77.27%), Query Frame = 0 

Query: 70  SCDLSLADELNAVKMKLERLRLDGERTEKMLRERDMVLEMQRKEILQRSEVQRDLEMEVD 129
           S D SLA+EL+A K KLERLR D E TEK+L+ERD  +++    +LQR E Q+ LE++VD
Sbjct: 42  SIDASLAEELSAFKKKLERLREDRESTEKLLKERDEAMDLHMSHLLQRGETQKSLEIQVD 101

Query: 130 RLFRLKELRSYCMRISPMRSLREKEREK 158
           RLFRLKEL +Y  +ISP+RSLR KE+++
Sbjct: 102 RLFRLKELHAYSSKISPIRSLRAKEQQE 129

The following BLAST results are available for this feature:
BLAST of CmaCh07G012190 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G012190 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HS847.6e-9298.94high mobility group B protein 6-like OS=Cucurbita maxima OX=3661 GN=LOC111466110... [more]
A0A6J1EAP11.3e-8694.71high mobility group B protein 6-like OS=Cucurbita moschata OX=3662 GN=LOC1114323... [more]
A0A5A7SJQ23.9e-6475.65High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3CEI75.2e-6475.65High mobility group B protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A1S3CJ785.2e-6475.65high mobility group B protein 6 OS=Cucumis melo OX=3656 GN=LOC103501469 PE=4 SV=... [more]
BLAST of CmaCh07G012190 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595551.12.5e-12978.81hypothetical protein SDJN03_12104, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022966463.11.6e-9198.94high mobility group B protein 6-like [Cucurbita maxima][more]
XP_023517579.11.8e-8795.77high mobility group B protein 6-like [Cucurbita pepo subsp. pepo] >XP_023518497.... [more]
KAG7027530.11.5e-8694.71hypothetical protein SDJN02_11544, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022924949.12.6e-8694.71high mobility group B protein 6-like [Cucurbita moschata][more]
BLAST of CmaCh07G012190 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G01910.15.9e-2045.86unknown protein; Has 66 Blast hits to 66 proteins in 27 species: Archae - 0; Bac... [more]
AT5G01910.26.5e-1957.95unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36790MYELIN TRANSCRIPTION FACTORcoord: 12..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G012190.1CmaCh07G012190.1mRNA