CmaCh07G009950 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G009950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr07: 5125252 .. 5130019 (+)
RNA-Seq Expression	CmaCh07G009950
Synteny	CmaCh07G009950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGAAGGCTGGTCTCCAGAAGCAGAAACAGAGGTATTATACATGATAATTTTCATAGGGAAGATTTTAGTTCGCTGTTTCTGAAAGCTAAAAACCATGTCTATAAAAGCATAGGACTCTTGGTTTTTCCGGGGTCCTAATGCTTACTTCATCCTTGCCTTTTCTTTAGAACATTGATCGCTTCCAACAAGGTATTTTTTTTTATTTGTTTTAGAATCTTTAAATTACAGTCCTCTAGTGTTCTTTATTTCTTTGCTTTTTTAGTTGATAGGCTCTCTCCTCCACGTTTTGTACATTATCTTAAAAGTTTTTTCGCACCACCAAATATGAATATTGTAACTTGATAACTAGCCCTGGATTATCATTTCTTTGTTGCCCTTGATTTTATTAGATTCTTACGTGCTTTGAGTCAGCCATAAATGCAAGTGGGTTTTGAATTCCTGATTATTTTGAAAACGAATTTGCATCCACTATCCTTTATTTTATATTATGGCCTCGGCTTTTGTTTTTGTATCACTTATTTTCTTTCGGTGGGATTCAAATTGGAAATCCACCTACAACATTATCATTTTCCATCGGAGGTAAAAGTCAAAAGAAATGTGCTGGTCCTCCTTTCCATGGATTATGATAGTAACAGACACCATCATAGACAGGCTTCATATACGATCTGATGTTCTCCATGCCATTCTTCCCCTGTTCAAGCGGATGAGTGTGTCTTGGTTGACAAATTCATCTACGTCAATTCTCATTATTGACTGGAATTTTCGGACCATTCACCAGTCAATATTTGAACTGCATCATCTCCAGTATAAACTGGAAATTCGGATAGAGATGATCCAGTTTTCCCTAGCTCTCTTGTACCTCAAGGCAATCTTTTTAACCATTGAATGATCGAAAATATGATCAGAGACTCAGAGTTGTTCATTCCCTCCCTGTATGTATGCTTAGATCATTTTCAACATCATAGAAATCAATCAATTATTGCCAGTTGAATTCAACAGTAGGATTTCAAGGCCTTCAAATTGGCTTAGACCCTTCAAACTTCATTAGAATGAGTAGTGGGGTGGGGGAGAAAGTAAAGTGGTGTGTTTATCTCCCCATTTTTAATCAGCCAATCCAGCTTCAACATTATGTTCTGAGATGAAGCCAGCTCAAAAGTCGAAAACTCAGTTATTCTTTCAATATTGTATACAATATTCCAGAGCCAAAACCCAGCCCATGATACATTGTCTGCTTGGACCTTAGAAGTTAGAATGAGATTATCTGGTTGTGGGAATAGCTAGACCTGTTCAAATGAATTTGGACAACGTCACATTAATTACCAAAAAAATTTAGAATATTAAGATACGACTTAAGTTATCTTAATTATCTGAAATTTTGGAATCAGATTCATCCAATTTCTTGAACTTTGATATTCTTTTTGGGTGATTGGGAAGATAGAATTTCAAGCATCTTTATAGAATTGCCTAAGCCTGGCCTACCACTGTATTCTCTCTACGGCATTTGGCGGGCGGCACTTACACTTGTCTCCCTACTTTTTCGATTGCACATACATACATAAATGCATGCATGCATACATGATTGTATTTGGGGAAGAATCTGATCTTTATTCGCTAGTTTCAAATTTCAAATACAACTTGAAAATTCAAAAGCTCTTCAATTTAGTTGACTATTTGCGGTGGTTTGGAAAAATATTTGGTCCAAGGGTTCGAAGTAGGTTTTGTTTTCCTACTATTTCTAAATTATATTAGCTAAATAATATATAAATATCTTGGTCAATGATCTGGGGATTGTAAATTAGTTTCTTTTTATGTTGTAACAAATAAATTTGCAATTTTAATGAATTAGGTTTTGATCTGGATTGATTGATTGGTTTTTTTTTTTTTTTTTTTTTTTTCTTTTCCTCTTTTAAGTTATTGGTTTAGATTAACCTATAAGTAGTATAGGCGTTTGCTTAGTCCGGATTATAATTTAATTGTTTGTTTGCATTGACTATTACATCCACAATGATTTTGTGTATAATTGAAATCTTTTATTAATTGTTATATGTTCATCCGTGACAATGGTTAAAATAATCTTATTTCAAGGGATAATCCAAAATCATTTATTATGCCTATATCAGTCTGTAAAATAGCTCAAATATACTTTAGGCTATTTTACTAATAATTAAATTGTGTGGTAACCATTTCATTATGGCATACTCAACCCACCAAACCAACAACTCATCTCGTGCTGGATGCTTTTTCTGGTCTGACCAAGATTTCCATTTCCAAGAATATTTAAAAGGAAAACCTAACACAATATTGGTTTTTCTCTGTTCACAAACAAGTTTAGGAAAAGGGGATTAAGAGGAGAGAGAAAGAGAAAGGCAGATTACTTTTGCCCTTGATTTTGTTTGAATGGGTTATCGAATTTTGATCCACAGGTCCAATTCCACCCAAGGATTTCTTCTTCTGACTGATCAAAACAAGGTCAAACTCAAAATAAGTTCCTTTTTTTCAAGTTCAGATTTTGAAGGAACCCTTTTTTTTTGAAGCATTTTTAGAGGTTCTTGAGTGTAAAGGTTAACGATTAGGCATTTCTTCCAGTTTGTATATTGTTTTTTACCTAATTATTTGTTTTGGGTAGGTAGGAAGGAAGTCAAGACTTCTAGAGAAGAAACTTCTTCTGAAGTCTGCAAAACAAAATTGTTGAAAATTTCCAAACAATTCTGCTTTGGAATGTATTGGTGTTGTATGCAAGTTGCAACACACACACACACATAGTTGGGATGAAGACAGGAAACTGAACAACTCTACGCTCTCTCTGTTTAAAGTTGAACAAGAGAGAGTGATTTGATTGCATGTGTAATGAGAATAGGGAAGAATAAATGAAATAAATGGCAGGATTAATTGCCCAACCTTCTGTTATCTTGATTTCTATAGGCTAGTATCTCTATTTACATCAATGAATGCCAGATTCTCCCTTCGAATGAAATGATGATTACCGAAACATCGTCATGGTACTTCCGCCGCTCCCCTTGTGGGATGTCGAGCAGCTCATGGAAGTCCATTCCTGCAAGTTTTCCAAATCAGATTACCAAAGTTCACACTCCAACTTATATCTGTTAGTTCTTTTTATCTTCCTGTAATGTTGACAGATGAGGAGCTTACCGTATTTTTTCGCTGCTCGGAACAGTACTTCTTCAATTAGATGTTGAGCAGGATCTCCTTCAGGAAAAGCAGCAATGAAGGACTCTACTTGAGAAACAGCTTCTTCGTTGGTGAAGTACTGGTAGAGTCCATCAGAGGATAGTATCAAGAATCTGTCTGTTGGGCTGAGTTTGTAATGGCAGAGTGTTGGATCACAGGTGATGTAAGGTGAATTTCCCACATAGTCTATTCTGAACATCTCTAGCAGTGCATCATTCCACTTTGGCTGCAAAACACAGCCGATCAGCTCAAACTCAAATTGTATGCAACATTGGATTCTGAATTGAATCGACCATTTGCCTTCTAATTTAGTTTTTAGTCGAATCTCTTACATTCTAGCTGACTCAAAGGATTAGAGATGTAGAATACCTGTTTGAGAAAGCCAGCTCCAAAAGCCCGAGTAATTTTCAAATAACCTTTCACCCTGTCGTTCATAATTGCTGAAGCATCGTTGGGATGAGCCTTCTTGATCCTCTGGACTTCCTGATATTCAAGTTTTCTCATAAGTTCTTGTGACCACAAAGAAAATGGACATGAAAAATGCAGTCTTGTACGGGAAATGAGTGATATAGACAAGAACATTACCTCCTCTGTGTAGGTGCTGTGGTCCATTGTAAGCTGATGGGAGGCTAAGGTTGTTAACCTTTCGAACTCCACACCATTAGAAGATTCAAATACTCGTAGTGTTCCTTCATTGATTCTCTCCAAGTCTCTGTATTGCTTTCCAATCCCGAAATCCGGTTCGAGTTGCTGCGCTACAATAGCACGGCTGTCTCCGACATTCATCAAGTACACATCTTCTCCTCTCATCAACATGACCAAAACACAAGAACCCATAAGAGCTAGCTCAGGGTTTCTTGTAACCATCTTGTCTGCATTTTGTAGATATGCTTCCTCTGTTTTTCTCAATGCTTGAGACAGAGCATTTAACACTTCAGAATGATTGATTGCTGTTGATTCATCCCATATTTGGTGATGATGATCTAATTGTTTATTGTTCATCTTCCCGTCGAATTCTAATCTTTCCCTTTCCCATTCACATTTCCAAGTCTTGGGATTCTGATCAGCCCTCTTCATCAGCTGACTCGTCCTGTAGTTTGTATTATAAACTCTCTCTCTTTTCCTCATCGATTCAGCTTCCAAATTCACCATCTTATTTCCCGCAGGGAAATTCTCTGTAGATTGATGATTTTTCAGGTGGGTTGTTCCGTCATCTTCCTCAATTGAAGCAGAGTTTGATGAGTTCACGGAAGACGAAGTTGCAGTTGAATCAAACTTATCACTCCAAATTAATCCCTTGAGTTCTCTTAGAACGGCAGCATAGAGATTAGCGAGTAAGTAATCAGGAGCATCAGGGCCGTTGAATCCGTCGTAAATTCCGACGAAAACCCAACCATTGTCCTCGGAAATCACCACATGAACTCTGTCCTCACCGGCCTTCCCCTGTGCCCACTGTACGCTCTGGCCGCCGAGAAAGTAATCGCCGTCGTCTTCCGGCGCCAAGCTCGCATGGCTGCTCAAATGGACACTGCTTTGAGTCTGAGTAGCTGCAGCATTTTCATTGTGTTTGTATGA

mRNA sequence

ATGTCGAAGGCTGGTCTCCAGAAGCAGAAACAGAGGAGCATCAGGGCCGTTGAATCCGTCGTAAATTCCGACGAAAACCCAACCATTGTCCTCGGAAATCACCACATGAACTCTGTCCTCACCGGCCTTCCCCTGTGCCCACTGTACGCTCTGGCCGCCGAGAAAGTAATCGCCGTCGTCTTCCGGCGCCAAGCTCGCATGGCTGCTCAAATGGACACTGCTTTGAGTCTGAGTAGCTGCAGCATTTTCATTGTGTTTGTATGA

Coding sequence (CDS)

ATGTCGAAGGCTGGTCTCCAGAAGCAGAAACAGAGGAGCATCAGGGCCGTTGAATCCGTCGTAAATTCCGACGAAAACCCAACCATTGTCCTCGGAAATCACCACATGAACTCTGTCCTCACCGGCCTTCCCCTGTGCCCACTGTACGCTCTGGCCGCCGAGAAAGTAATCGCCGTCGTCTTCCGGCGCCAAGCTCGCATGGCTGCTCAAATGGACACTGCTTTGAGTCTGAGTAGCTGCAGCATTTTCATTGTGTTTGTATGA

Protein sequence

MSKAGLQKQKQRSIRAVESVVNSDENPTIVLGNHHMNSVLTGLPLCPLYALAAEKVIAVVFRRQARMAAQMDTALSLSSCSIFIVFV

Homology

[Close]

BLAST of CmaCh07G009950 vs. NCBI nr
Match: KAG7033837.1 (hypothetical protein SDJN02_03562, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 105.1 bits (261), Expect = 3.0e-19
Identity = 54/76 (71.05%), Postives = 66/76 (86.84%), Query Frame = 0


Query: 12  RSIRAVESVVNSDENPTIVLGNHHMNSVLTGLPLCPLYALAAEKVIAVVFRRQARMAAQM 71
           RSIRAVES++NSD+NPTI+L  HH+NS+LTGLPLCPLYAL A+KVIA+VF RQ  +AAQM
Sbjct: 105 RSIRAVESIINSDKNPTIILRYHHVNSILTGLPLCPLYALTADKVIAIVFLRQTGLAAQM 164

Query: 72  DTALSLSSCSIFIVFV 88
           +TALSL SC + I+ V
Sbjct: 165 NTALSL-SCILIILLV 179

The following BLAST results are available for this feature:

BLAST of CmaCh07G009950 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G009950 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G009950 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033837.1	3.0e-19	71.05	hypothetical protein SDJN02_03562, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CmaCh07G009950 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G009950.1	CmaCh07G009950.1	mRNA