CmaCh07G009720 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G009720
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionATP synthase
LocationCma_Chr07: 4705074 .. 4706194 (+)
RNA-Seq ExpressionCmaCh07G009720
SyntenyCmaCh07G009720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTCATTTGTGAAAGAGAATCCAGACGACGAACGCAGACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGGTATGATGATCGATTTTTTTTTTTTTTTTTTTTTTTTTGGATTGAATTCGATTCCTTTACTTCTAATTGTGTTGATCCTTTTGACGTTTGATTTTCAGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGGTATTTTCTCGGAACCCTAATTTACTATCCCACGCCCCGCACTTTTGATTTGCATATGAATGAAATCTAGTGTTCGATACAATTTCGATTTTTCTTTTGATTTGTGGTTTTCGTCTGAAAAGTTATAAATCATTAATGAGAATTGTACATTTTATCACTTGTTTTCTTTCTTTTTGAATCGGGGTTGTTTATATTTATTGAGTGTGGTTGTGGTAAAGACTGGCCTAGATTGTTTATGTGCGTGTATTGCTTGCTGATTTTTCTTCGATGACCATCCAGATATGTCATCGTAGTTTCATTCTTTGGGAGTATACTCTTTAATTTTCCCATTTGATTGGAAGGCAATTTTAGAGGAAGGCTAAAAATCCATCATACATAATCCAAAATCATCTGTAGGAAGGAATGAATAGAGGGTAACTGAATTTTGACAGTAATCTTAAAGCTATTAGACTTATTACGCTTGTTTCCTTTTCTTCACATATGTTCCAAAGTTTGTGGAATATATGCATTTTGCGTAGATGTTATTATACAAATCACTCTCTTGGCTATGTTCATATTCCAGAAATTCGTAGTTGGGTATTGTTGATTTCACGGATGAGATATGTATTTGGTTTTCCATTTTTTTTCTTCTCTATCCTTTCACCTTTATGGCGATTGTTGGTCTCTAGAACTTAGGAATTTGCTTGACAAGTTAATTCGCTGGCTGCTGCAGGTGATATCTTAAAGGGGAATTGGTGCTACTTCAAAATGAGATGTTTTATTTGTTCAAAATAACAGATGCTGCGGTTAGTTTACAAGCCATTTGA

mRNA sequence

GTTTTCATTTGTGAAAGAGAATCCAGACGACGAACGCAGACAGTCGAAGGAAGATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGTTGGGTATTGTTGATTTCACGGATGAGATATGGGAATTGGTGCTACTTCAAAATGAGATGTTTTATTTGTTCAAAATAACAGATGCTGCGGTTAGTTTACAAGCCATTTGA

Coding sequence (CDS)

ATGAGGAAGTTCGATCCATGGCCGGTGTTTTTCAGGCGAGAGTGGAAGAGGAACTGGCCGTTCCTTGTTGGTTTCGCCATAACTGGGGCCCTTATTACCAAGATGACCGCCGGACTTTCTGAGGAAGAGGTGAAGCAGTCTCCTTTCTACAAGAGGCACAATCGTTGGGTATTGTTGATTTCACGGATGAGATATGGGAATTGGTGCTACTTCAAAATGAGATGTTTTATTTGTTCAAAATAA

Protein sequence

MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNRWVLLISRMRYGNWCYFKMRCFICSK
Homology
[Close]
BLAST of CmaCh07G009720 vs. ExPASy Swiss-Prot
Match: P80497 (ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-06
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGF 26
          MR+FDPWPVFFRREW RN PFLV F
Sbjct: 1  MRQFDPWPVFFRREWSRNQPFLVXF 25

[Close]
BLAST of CmaCh07G009720 vs. TAIR 10
Match: AT3G46430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, mitochondrial respiratory chain complex III; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G59613.2); Has 51 Blast hits to 51 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

[Close]
BLAST of CmaCh07G009720 vs. TAIR 10
Match: AT5G59613.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

[Close]
BLAST of CmaCh07G009720 vs. TAIR 10
Match: AT5G59613.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrial respiratory chain complex III; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G46430.1). )

HSP 1 Score: 94.4 bits (233), Expect = 4.6e-20
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 1  MRKFDPWPVFFRREWKRNWPFLVGFAITGALITKMTAGLSEEEVKQSPFYKRHNR 56
          MR FDPWPVFF+REWKR WPFL GFA+TG LITK+TAGL+EE+ K S F ++H R
Sbjct: 1  MRLFDPWPVFFKREWKRCWPFLTGFAVTGVLITKLTAGLTEEDAKNSKFVQQHRR 55

The following BLAST results are available for this feature:
BLAST of CmaCh07G009720 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P804972.1e-0684.00ATP synthase 6 kDa subunit, mitochondrial (Fragment) OS=Solanum tuberosum OX=411... [more]
BLAST of CmaCh07G009720 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G46430.14.6e-2070.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT5G59613.14.6e-2070.91unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G59613.24.6e-2070.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34565TRANSMEMBRANE PROTEINcoord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G009720.1CmaCh07G009720.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane