CmaCh07G009480 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G009480
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Zinc finger CCHC domain-containing protein 10
Location	Cma_Chr07: 4563351 .. 4564690 (-)
RNA-Seq Expression	CmaCh07G009480
Synteny	CmaCh07G009480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAGAGGCCTAAGGCCAAGGAGTGTTCTGACATTGACAACATCTTTGTTTTTTTGAAACAAACAACTCCGAATCAAGTAATTCAAATTTCCAAAATCCCTTCTCTTCTCTCCCCAGATTACTAACTATTTCATTTCTCATTGCATTGCTAGTTTTCTCTCATTTTGAGCTCATAGATTGCTTTCATGGTGAATGTAGCAGATTGTTGAAGCTTTCAATAAAATGGTGGCTACTACTTGCAAAGAAGATGGACAATGGAGGTGGATTCTCTCTCTCTTTTCTCTTCCACTTCTCTGTTTTTTTTTTTTTTTTTTTTTCTCTCTCTGTGGTTCAGATTCTTGAGATGGATATGAGTATTGAGAGTGAAATGGATTGATTTGGTTGCAGTGGAAAGAAAATGGAAGTTGGAGAAGGTTTGAAGACTTTAGAGTGCTTAAGAGGAAGATTGCTTGCAGAGAGACAAGCTTCGAGATCGGCCAAAGAAGAAGCAGAGCTTATGGGGGAAAAGGTAATGGAGATTTTCTTGATCACAGTTCACATTCTGCATGTCTCTTTGCTTCCATTCTCTAACATTGTTCTTCTGTTATTGTGAAGTTGATAGAGTTGGAGAATCAGATTAGAAAGGAGACAGAGGCAAGGAACAAAGCTGAGAGGAGGCTTAAACTCCTGATGAAGAAGCTTGAATCCCTCAACATTGCCTCCACATCAGTAACCTCAGAAAATTCAAATTCAACAGAAATTTCCACAAATTCCTCAGCCACAAAAGAAACACAAGTCCAAGAATCAAGATCAGAGAGTCTCGTTTCAACGATCTCGAACAATAAAGGCGAGAAAGTTCAAGAAATCATCATAGATAACAAACCTAATCAGATTTCTCCAGATCGAGCCAATTCAAGCCCGAACTCCAAATCTCCAAACAATTCCAGCACCGATCCCCACCGATCTCCTCAAATCTCTCAAGTAAAATATCAAAGGTACCAAAATTCTGTCAGAATGTATCAAAACTTCACCATTCATACACGATTAACCTAGGTTCGAGACTAATCGAGACTACCAATGCTTCGTAATTGTTTGAAGCTTTTCAGCAGAAGGAAAGGAGAGAGAGAACGAACATTACATAGATAAGTTGGCCGCGTCGGCCCCCGGAGCAGCACCGGCGGCGACGAAGATGAAGATGAAGATGAAGGGAATCCATGAGAGGGGAACAGATGTTCCTGATGCTGTAAAGCAGCACGTCATCAGAGGAAACGTCCAGAGGCCATTTGAGAGAAGAAATCAAATGAAAGCCATAATGAGTATGTAAATTAATTCTATTTGTTGTAATATTTTTGTAAGAAT

mRNA sequence

AAGAAAGAGGCCTAAGGCCAAGGAGTGTTCTGACATTGACAACATCTTTGTTTTTTTGAAACAAACAACTCCGAATCAACAGATTGTTGAAGCTTTCAATAAAATGGTGGCTACTACTTGCAAAGAAGATGGACAATGGAGTGGAAAGAAAATGGAAGTTGGAGAAGGTTTGAAGACTTTAGAGTGCTTAAGAGGAAGATTGCTTGCAGAGAGACAAGCTTCGAGATCGGCCAAAGAAGAAGCAGAGCTTATGGGGGAAAAGTTGATAGAGTTGGAGAATCAGATTAGAAAGGAGACAGAGGCAAGGAACAAAGCTGAGAGGAGGCTTAAACTCCTGATGAAGAAGCTTGAATCCCTCAACATTGCCTCCACATCAGTAACCTCAGAAAATTCAAATTCAACAGAAATTTCCACAAATTCCTCAGCCACAAAAGAAACACAAGTCCAAGAATCAAGATCAGAGAGTCTCGTTTCAACGATCTCGAACAATAAAGGCGAGAAAGTTCAAGAAATCATCATAGATAACAAACCTAATCAGATTTCTCCAGATCGAGCCAATTCAAGCCCGAACTCCAAATCTCCAAACAATTCCAGCACCGATCCCCACCGATCTCCTCAAATCTCTCAAGTAAAATATCAAAGCTTTTCAGCAGAAGGAAAGGAGAGAGAGAACGAACATTACATAGATAAGTTGGCCGCGTCGGCCCCCGGAGCAGCACCGGCGGCGACGAAGATGAAGATGAAGATGAAGGGAATCCATGAGAGGGGAACAGATGTTCCTGATGCTGTAAAGCAGCACGTCATCAGAGGAAACGTCCAGAGGCCATTTGAGAGAAGAAATCAAATGAAAGCCATAATGAGTATGTAAATTAATTCTATTTGTTGTAATATTTTTGTAAGAAT

Coding sequence (CDS)

ATGGTGGCTACTACTTGCAAAGAAGATGGACAATGGAGTGGAAAGAAAATGGAAGTTGGAGAAGGTTTGAAGACTTTAGAGTGCTTAAGAGGAAGATTGCTTGCAGAGAGACAAGCTTCGAGATCGGCCAAAGAAGAAGCAGAGCTTATGGGGGAAAAGTTGATAGAGTTGGAGAATCAGATTAGAAAGGAGACAGAGGCAAGGAACAAAGCTGAGAGGAGGCTTAAACTCCTGATGAAGAAGCTTGAATCCCTCAACATTGCCTCCACATCAGTAACCTCAGAAAATTCAAATTCAACAGAAATTTCCACAAATTCCTCAGCCACAAAAGAAACACAAGTCCAAGAATCAAGATCAGAGAGTCTCGTTTCAACGATCTCGAACAATAAAGGCGAGAAAGTTCAAGAAATCATCATAGATAACAAACCTAATCAGATTTCTCCAGATCGAGCCAATTCAAGCCCGAACTCCAAATCTCCAAACAATTCCAGCACCGATCCCCACCGATCTCCTCAAATCTCTCAAGTAAAATATCAAAGCTTTTCAGCAGAAGGAAAGGAGAGAGAGAACGAACATTACATAGATAAGTTGGCCGCGTCGGCCCCCGGAGCAGCACCGGCGGCGACGAAGATGAAGATGAAGATGAAGGGAATCCATGAGAGGGGAACAGATGTTCCTGATGCTGTAAAGCAGCACGTCATCAGAGGAAACGTCCAGAGGCCATTTGAGAGAAGAAATCAAATGAAAGCCATAATGAGTATGTAA

Protein sequence

MVATTCKEDGQWSGKKMEVGEGLKTLECLRGRLLAERQASRSAKEEAELMGEKLIELENQIRKETEARNKAERRLKLLMKKLESLNIASTSVTSENSNSTEISTNSSATKETQVQESRSESLVSTISNNKGEKVQEIIIDNKPNQISPDRANSSPNSKSPNNSSTDPHRSPQISQVKYQSFSAEGKERENEHYIDKLAASAPGAAPAATKMKMKMKGIHERGTDVPDAVKQHVIRGNVQRPFERRNQMKAIMSM

Homology

[Close]

BLAST of CmaCh07G009480 vs. TAIR 10
Match: AT2G37300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages. )

HSP 1 Score: 76.6 bits (187), Expect = 3.1e-14
Identity = 71/176 (40.34%), Postives = 97/176 (55.11%), Query Frame = 0


Query: 4   TTCKEDGQWSGKKM----EVGEGLKTLECLRGRLLAERQASRSAKEEAELMGEKLIELEN 63
           T C+ +  ++ KKM    E  EG +T+ECLRGRLLAERQ SRSAKEEAEL+  K+ ELE 
Sbjct: 69  TKCRTN--FASKKMEEEEEKEEGQRTVECLRGRLLAERQVSRSAKEEAELITRKMEELER 128

Query: 64  QIRKETEARNKAERRLKLLMKKLESLNIASTSVTSENSNSTEISTNSSATKETQVQESRS 123
            +++E   R KAE+RLKLLMKKLE +     S +SE S+S+E+S  SS       +E   
Sbjct: 129 NLKEEIRLREKAEKRLKLLMKKLEFI---KGSRSSEGSSSSEVSCISSVCTSASKEEEEE 188

Query: 124 ESLVSTISNNKGEKVQEIIIDNKPNQISPDRANSSPNSKSPNN------SSTDPHR 170
                 +   K +   E       N  S + A+SS   K  ++      +ST  H+
Sbjct: 189 THDSGAVDEGKTDHATE-------NVASTEEADSSSKLKDVSSGEASVVASTSSHK 232

[Close]

BLAST of CmaCh07G009480 vs. TAIR 10
Match: AT2G37300.1 (unknown protein; Has 93 Blast hits to 62 proteins in 29 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 19; Plants - 25; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-13
Identity = 66/158 (41.77%), Postives = 88/158 (55.70%), Query Frame = 0


Query: 18  EVGEGLKTLECLRGRLLAERQASRSAKEEAELMGEKLIELENQIRKETEARNKAERRLKL 77
           E  EG +T+ECLRGRLLAERQ SRSAKEEAEL+  K+ ELE  +++E   R KAE+RLKL
Sbjct: 6   EKEEGQRTVECLRGRLLAERQVSRSAKEEAELITRKMEELERNLKEEIRLREKAEKRLKL 65

Query: 78  LMKKLESLNIASTSVTSENSNSTEISTNSSATKETQVQESRSESLVSTISNNKGEKVQEI 137
           LMKKLE +     S +SE S+S+E+S  SS       +E         +   K +   E 
Sbjct: 66  LMKKLEFI---KGSRSSEGSSSSEVSCISSVCTSASKEEEEETHDSGAVDEGKTDHATE- 125

Query: 138 IIDNKPNQISPDRANSSPNSKSPNN------SSTDPHR 170
                 N  S + A+SS   K  ++      +ST  H+
Sbjct: 126 ------NVASTEEADSSSKLKDVSSGEASVVASTSSHK 153

The following BLAST results are available for this feature:

BLAST of CmaCh07G009480 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G009480 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37300.2	3.1e-14	40.34	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G37300.1	1.2e-13	41.77	unknown protein; Has 93 Blast hits to 62 proteins in 29 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 40..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 140..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..128
None	No IPR available	PANTHER	PTHR33701	TRANSMEMBRANE PROTEIN	coord: 4..167
None	No IPR available	PANTHER	PTHR33701:SF2	TRANSMEMBRANE PROTEIN	coord: 4..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G009480.1	CmaCh07G009480.1	mRNA