CmaCh07G009400 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G009400
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	60S ribosomal protein L4-like
Location	Cma_Chr07: 4523344 .. 4525895 (-)
RNA-Seq Expression	CmaCh07G009400
Synteny	CmaCh07G009400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTATTTTTCATATTTAATAATTAAGAAAAAATAATTAATGATCCATTTTTGTGACATGAAACAGCGAAGCCATACTCACATATATAAACGCTCAGCCGGCAAACCCTAACTCTTCTCTTCCTTTCTCTCTTCTCTTCTTCACTTCACACACGAACACTCTTCAATGGCTGTTGCCGCCGCTCGCCCACTTGTTTCGGTTCAGTCCCTTGAAGGGGACATGGCCACTGATGCGGCGCCCGGCGTCCCGCTGCCCGACGTGATGAAGGCTTCAATTCGGCCGGATATTGTTAGCTTTGTTCATTCCAATATCTCAAAGAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGGGCCGGCCACCAAACCTCCGCTGAGTCCTGGGGTACCGGACGTGCTGTGTCCCGTATTCCCCGTGTCCCTGGCGGTGGAACTCACCGTGCTGGTCAGGGTGCTTTTGGAAACATGTGTCGTGGTGGTCGAATGTTCGCTCCAACTAAGATCTGGCGACGTTGGCACCGAAAGATCAATGTGAATCAGAAGAGGTATGCTGTTGTTTCGGCTATTGCTGCCTCGGCTGTTCCATCGTTGGTTCTTGCTCGCGGCCATCGTATCGAGTCTGTCCCTGAATTGCCTCTTGTTGTGAGCGACTCGGCCGAAGGCGTTGAGAAGACCTCCGCTGCAATCAAGGTTCTCAAACAGGTTGGTGCTTTTCCCGATGCTGAGAAGGCCAAGGATAGCCATGCGATCCGTCCTGGTAAGGGTAAAATGAGGAACCGTCGCTACATTTCTCGCAAGGGTCCGTTGATTGTTTACGGAACTGAGGGCGCTAAACTTGTTAAGGCCTTCCGTAACATTCCGGGAGTTGAGATTGCCAATGTTGAGAGGCTTAATTTGTTGAAGCTCGCTCCTGGTGGTCACCTTGGAAGGTTTGTGATCTGGACCAAGTCTGCTTTTGAGAAGCTTGATTCTATCTATGGATCTTTCGAGAAGCCTTCAGAGAAGAAAAAGGGTTACGTCCTCCCAAGGTCTAAGATGGTGAATGCAGATTTGTCAAGGATTATTAACTCTGATGAAGTCCAATCTGTGGTGAAGCCGATTAAGAAGGCGGTTAAGAGAGCTCCATTGAAGAAGAACCCATTGAAGAACTTGAACGCCATGCTCAAGCTTAACCCGTATGCCAAGACTGCTAGAAGAATGGCTCTTTTGGCGGAGGAGCAACGTGTTAAGGCTAAAAAGGAGAAACTCGACAAGAAGAGGAATTTGACTACAAAGGTACATCATTCATGTTCTTAGTGATTATATCTTCATTCTTTTAGAAATTAAGTTCCGCATATCTCCATAGTAGATTGATTGGGCTGGCGATTTCCTTCAAATACTTATTAAGTTGATACTATTTTTGATGTGGGTTTGGTTCCACTCTTAAGATTGATAGCATAATTAATTTAATTTTATGTTACTTACAGTTGAATCTTTGTATCCGGCTCATAGTTATTGGGGTCTGCTTAATGATATGCTTTTATGAAAATTATTGCTCTATGTTCAATCATGTCCTGTTATCATTTAACTTTGATATCATCGTTCTTGAGGACTACTGTTTACTCTCATCACTTATACTAAATAATTGATTAGATTGGTCGAATCTTAAGTACACCTTGTTCTATGTGCTCGCCTTTTCCATCCTTGTAAGTTCAAGTAATCTCTTGTTGAATTGGTAGAGAACTAATTTATTTTTTAGATTTCTTTGTTTCATCATGATGAGGAGATGTTCGTTTGATCCTTCCGAAAGTTTCTGTCCTTTTTGGTTTCTCATTTTTAGTTGAATCATCGATACTCCGTGGCCACAAGTTGTTTTTTATACGGTGGCACGATCATATGATCATATCATCTGCATTTTGTGGAACCAGACTTTGTTGTCTCAGTACATATCCTATTCATGGTGTTGACTTTCTTTTCTACTTTTTTGTGCATGAACCTCACAGGAGGAGGCTACTTCAATCAAAGCTGCAGGCAAGGCATGGTATCAGACGATGATCTCCGACAGTGATTACACCGAGTTCGACAACTTCTCGAAATGGCTCGGCGTCTCTCAGTAATTTCGTTTTTCGTAATTCAAAATCTCATAGACCTCATTACTTCGGTAAATCTAGTTTTGTCAAGGAGTTGATTTTTCTTGCTTGGATTGTCGTTGCGTTTAGAGTTTAGGAGAGGAGAACAATGAGTGAAGTAACATGATGATTTACGTTTGGCCTTTTGCTCTCCCATTTTTATCTACAATCCTCCCCTTTGTTTATCCACAAGGAGTGTGTAGTAGTTGGCTTATATCATCATGTCACCATGGTGAGATTACATGCACTGTGATATGCAATTCTTCTGCTTTTAATGGTCATTGTTCTTGATGCCCTTTTATTCAACGCCATATCATTTTTCCCCATTGGCTTAGCCTTAGTCTTGGAGTGATTAGTATTATGCAATTTCTAAAATTGTTTACAATTGTATATTGTGTGTTTATAAATCTTCAATATATACTAATATAATAATATATTTTCTTCCCCAA

mRNA sequence

TTATTTTTCATATTTAATAATTAAGAAAAAATAATTAATGATCCATTTTTGTGACATGAAACAGCGAAGCCATACTCACATATATAAACGCTCAGCCGGCAAACCCTAACTCTTCTCTTCCTTTCTCTCTTCTCTTCTTCACTTCACACACGAACACTCTTCAATGGCTGTTGCCGCCGCTCGCCCACTTGTTTCGGTTCAGTCCCTTGAAGGGGACATGGCCACTGATGCGGCGCCCGGCGTCCCGCTGCCCGACGTGATGAAGGCTTCAATTCGGCCGGATATTGTTAGCTTTGTTCATTCCAATATCTCAAAGAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGGGCCGGCCACCAAACCTCCGCTGAGTCCTGGGGTACCGGACGTGCTGTGTCCCGTATTCCCCGTGTCCCTGGCGGTGGAACTCACCGTGCTGGTCAGGGTGCTTTTGGAAACATGTGTCGTGGTGGTCGAATGTTCGCTCCAACTAAGATCTGGCGACGTTGGCACCGAAAGATCAATGTGAATCAGAAGAGGTATGCTGTTGTTTCGGCTATTGCTGCCTCGGCTGTTCCATCGTTGGTTCTTGCTCGCGGCCATCGTATCGAGTCTGTCCCTGAATTGCCTCTTGTTGTGAGCGACTCGGCCGAAGGCGTTGAGAAGACCTCCGCTGCAATCAAGGTTCTCAAACAGGTTGGTGCTTTTCCCGATGCTGAGAAGGCCAAGGATAGCCATGCGATCCGTCCTGGTAAGGGTAAAATGAGGAACCGTCGCTACATTTCTCGCAAGGGTCCGTTGATTGTTTACGGAACTGAGGGCGCTAAACTTGTTAAGGCCTTCCGTAACATTCCGGGAGTTGAGATTGCCAATGTTGAGAGGCTTAATTTGTTGAAGCTCGCTCCTGGTGGTCACCTTGGAAGGTTTGTGATCTGGACCAAGTCTGCTTTTGAGAAGCTTGATTCTATCTATGGATCTTTCGAGAAGCCTTCAGAGAAGAAAAAGGGTTACGTCCTCCCAAGGTCTAAGATGGTGAATGCAGATTTGTCAAGGATTATTAACTCTGATGAAGTCCAATCTGTGGTGAAGCCGATTAAGAAGGCGGTTAAGAGAGCTCCATTGAAGAAGAACCCATTGAAGAACTTGAACGCCATGCTCAAGCTTAACCCGTATGCCAAGACTGCTAGAAGAATGGCTCTTTTGGCGGAGGAGCAACGTGTTAAGGCTAAAAAGGAGAAACTCGACAAGAAGAGGAATTTGACTACAAAGGAGGAGGCTACTTCAATCAAAGCTGCAGGCAAGGCATGGTATCAGACGATGATCTCCGACAGTGATTACACCGAGTTCGACAACTTCTCGAAATGGCTCGGCGTCTCTCAGTAATTTCGTTTTTCGTAATTCAAAATCTCATAGACCTCATTACTTCGGTAAATCTAGTTTTGTCAAGGAGTTGATTTTTCTTGCTTGGATTGTCGTTGCGTTTAGAGTTTAGGAGAGGAGAACAATGAGTGAAGTAACATGATGATTTACGTTTGGCCTTTTGCTCTCCCATTTTTATCTACAATCCTCCCCTTTGTTTATCCACAAGGAGTGTGTAGTAGTTGGCTTATATCATCATGTCACCATGGTGAGATTACATGCACTGTGATATGCAATTCTTCTGCTTTTAATGGTCATTGTTCTTGATGCCCTTTTATTCAACGCCATATCATTTTTCCCCATTGGCTTAGCCTTAGTCTTGGAGTGATTAGTATTATGCAATTTCTAAAATTGTTTACAATTGTATATTGTGTGTTTATAAATCTTCAATATATACTAATATAATAATATATTTTCTTCCCCAA

Coding sequence (CDS)

ATGGCTGTTGCCGCCGCTCGCCCACTTGTTTCGGTTCAGTCCCTTGAAGGGGACATGGCCACTGATGCGGCGCCCGGCGTCCCGCTGCCCGACGTGATGAAGGCTTCAATTCGGCCGGATATTGTTAGCTTTGTTCATTCCAATATCTCAAAGAACAGCCGCCAGCCCTACGCCGTCAGCAAGCGGGCCGGCCACCAAACCTCCGCTGAGTCCTGGGGTACCGGACGTGCTGTGTCCCGTATTCCCCGTGTCCCTGGCGGTGGAACTCACCGTGCTGGTCAGGGTGCTTTTGGAAACATGTGTCGTGGTGGTCGAATGTTCGCTCCAACTAAGATCTGGCGACGTTGGCACCGAAAGATCAATGTGAATCAGAAGAGGTATGCTGTTGTTTCGGCTATTGCTGCCTCGGCTGTTCCATCGTTGGTTCTTGCTCGCGGCCATCGTATCGAGTCTGTCCCTGAATTGCCTCTTGTTGTGAGCGACTCGGCCGAAGGCGTTGAGAAGACCTCCGCTGCAATCAAGGTTCTCAAACAGGTTGGTGCTTTTCCCGATGCTGAGAAGGCCAAGGATAGCCATGCGATCCGTCCTGGTAAGGGTAAAATGAGGAACCGTCGCTACATTTCTCGCAAGGGTCCGTTGATTGTTTACGGAACTGAGGGCGCTAAACTTGTTAAGGCCTTCCGTAACATTCCGGGAGTTGAGATTGCCAATGTTGAGAGGCTTAATTTGTTGAAGCTCGCTCCTGGTGGTCACCTTGGAAGGTTTGTGATCTGGACCAAGTCTGCTTTTGAGAAGCTTGATTCTATCTATGGATCTTTCGAGAAGCCTTCAGAGAAGAAAAAGGGTTACGTCCTCCCAAGGTCTAAGATGGTGAATGCAGATTTGTCAAGGATTATTAACTCTGATGAAGTCCAATCTGTGGTGAAGCCGATTAAGAAGGCGGTTAAGAGAGCTCCATTGAAGAAGAACCCATTGAAGAACTTGAACGCCATGCTCAAGCTTAACCCGTATGCCAAGACTGCTAGAAGAATGGCTCTTTTGGCGGAGGAGCAACGTGTTAAGGCTAAAAAGGAGAAACTCGACAAGAAGAGGAATTTGACTACAAAGGAGGAGGCTACTTCAATCAAAGCTGCAGGCAAGGCATGGTATCAGACGATGATCTCCGACAGTGATTACACCGAGTTCGACAACTTCTCGAAATGGCTCGGCGTCTCTCAGTAA

Protein sequence

MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINSDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKLDKKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ

Homology

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BLAST of CmaCh07G009400 vs. ExPASy Swiss-Prot
Match: Q9XF97 (60S ribosomal protein L4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 703.4 bits (1814), Expect = 1.5e-201
Identity = 360/405 (88.89%), Postives = 385/405 (95.06%), Query Frame = 0


Query: 2   AVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSK 61
           A AAARPLV+VQSLEGDMATD    V LPDVMKASIRPDIV+FVHSNISKNSRQPYAVSK
Sbjct: 4   AAAAARPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSK 63

Query: 62  RAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKIN 121
           +AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKIN
Sbjct: 64  KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKIN 123

Query: 122 VNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVGA 181
           VNQKRYAVVSAIAASAVPSLVLARGH+IE+VPELPLVVSDS EGVE+TSAA+KVLKQ+GA
Sbjct: 124 VNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGA 183

Query: 182 FPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERL 241
           + DAEKAKDSH+IRPGKGKMRNRRYI+RKGPLIVYGTEGAKLVKAFRNIPG++I NVERL
Sbjct: 184 YSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERL 243

Query: 242 NLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIINS 301
           NLLKLAPGGHLGRFV+WTKSAFEKLDSIYGSF+K SEKK GYVLPRSKMVNADL+RIINS
Sbjct: 244 NLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINS 303

Query: 302 DEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKLD 361
           DEVQSVV PI++  KRAPLKKNPL+ LN MLKLNPYAKTARRM+LLAE +RVKAKKEKLD
Sbjct: 304 DEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLD 363

Query: 362 KKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ 407
           KKR   +KEEA++IKAAGKAWYQTMISDSDYTEFDNF+KWLGVSQ
Sbjct: 364 KKRKPISKEEASTIKAAGKAWYQTMISDSDYTEFDNFTKWLGVSQ 408

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BLAST of CmaCh07G009400 vs. ExPASy Swiss-Prot
Match: Q9SF40 (60S ribosomal protein L4-1 OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1)

HSP 1 Score: 674.5 bits (1739), Expect = 7.6e-193
Identity = 339/406 (83.50%), Postives = 378/406 (93.10%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           MA AAARPLV++Q+L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+VYGTEG+K+VKAFRN+PGVE+ +VER
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           SDE+QSVV PIKK  KRA LKKNPLKNLN MLKLNPYAKTA+RM+LLAE QRVKAKKEKL
Sbjct: 301 SDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKL 360

Query: 361 DKKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ 407
            KKR   TKEEA +IKAAGK+WY+TMISDSDYTEFDNF+KWLG SQ
Sbjct: 361 AKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406

[Close]

BLAST of CmaCh07G009400 vs. ExPASy Swiss-Prot
Match: P49691 (60S ribosomal protein L4-2 OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2)

HSP 1 Score: 671.8 bits (1732), Expect = 4.9e-192
Identity = 339/406 (83.50%), Postives = 376/406 (92.61%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           +A AAARPLV+VQ L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 2   VASAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 62  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 122 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 181

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+V+GTEGAK+VKAFRN+PGVE+ +VER
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 301

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           SDEVQSVV PIK   KRA LKKNPLKNLN M KLNPYAKTA+RM+LLAE  RVKAKKEKL
Sbjct: 302 SDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKL 361

Query: 361 DKKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ 407
           +KKR + TKEEA +IKAAGKAWYQTMISDSDYTEFDNF+KWLG SQ
Sbjct: 362 EKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407

[Close]

BLAST of CmaCh07G009400 vs. ExPASy Swiss-Prot
Match: P08429 (60S ribosomal protein L4-A OS=Xenopus laevis OX=8355 GN=rpl4-a PE=2 SV=2)

HSP 1 Score: 436.0 bits (1120), Expect = 4.6e-121
Identity = 225/385 (58.44%), Postives = 289/385 (75.06%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           +++A ARPL+SV S +G+    +   V +P V +A IRPDIV+FVH+N+ KN+RQPYAVS
Sbjct: 3   VSMACARPLISVYSEKGE---SSGKNVTMPAVFRAPIRPDIVNFVHTNLRKNNRQPYAVS 62

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++
Sbjct: 63  KLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 122

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           N  QKRYAV SA+AASA+P+L++++GHRIE +PE+PLVV D  E  +KT  A+ +LK++ 
Sbjct: 123 NTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLK 182

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ D +K   S  +R GKGKMRNRR I R+GP ++Y  E   LVKAFRNIPG+ + NV +
Sbjct: 183 AWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIY-NENNGLVKAFRNIPGITLLNVSK 242

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLL+LAPGGH+GRF IWT+SAF KLD +YG++ K ++ K  Y LP  KM N DL+RI+ 
Sbjct: 243 LNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILK 302

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           S E+Q  ++   K VKR  LKKNPLKNL  M++LNPYAKTARR A+L + + +KAK++K 
Sbjct: 303 SQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKP 362

Query: 361 D-----KKRNLTTKEEATSIKAAGK 381
           D      K+ L  K +   +  A K
Sbjct: 363 DDGKPKAKKPLDAKTKMIKLAKAKK 383

[Close]

BLAST of CmaCh07G009400 vs. ExPASy Swiss-Prot
Match: P02385 (60S ribosomal protein L4-B OS=Xenopus laevis OX=8355 GN=rpl4-b PE=2 SV=2)

HSP 1 Score: 435.6 bits (1119), Expect = 6.0e-121
Identity = 224/385 (58.18%), Postives = 289/385 (75.06%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           +++A ARPL+SV S +G+    +   V +P V KA IRPDIV+FVH+N+ KN+RQPYAVS
Sbjct: 3   VSMACARPLISVYSEKGE---TSGKNVTMPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVS 62

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGNMCRGGRMFAPTK WRRWHR++
Sbjct: 63  KLAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRV 122

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           N  QKRYAV SA+AASA+P+L++++GHRIE +PE+PLVV D  E  +KT  A+ +LK++ 
Sbjct: 123 NTTQKRYAVCSALAASALPALIMSKGHRIEEIPEVPLVVEDKVESYKKTKEAVLLLKKLK 182

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ D +K   S  +R GKGKMRNRR I R+GP ++Y  E   ++KAFRNIPG+ + NV +
Sbjct: 183 AWNDIKKVYASQRMRAGKGKMRNRRRIQRRGPCVIY-NENNGIIKAFRNIPGITLLNVSK 242

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLL+LAPGGH+GRF IWT+SAF KLD +YG++ K ++ K  Y LP  KM N DL+RI+ 
Sbjct: 243 LNLLRLAPGGHVGRFCIWTESAFRKLDDLYGTWRKSAKLKADYNLPMHKMTNTDLTRILK 302

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           S E+Q  ++   K VKR  LKKNPLKNL  M++LNPYAKTARR A+L + + +KAK++K 
Sbjct: 303 SQEIQRALRAPNKKVKRRELKKNPLKNLRIMMRLNPYAKTARRHAILQQLENIKAKEKKP 362

Query: 361 D-----KKRNLTTKEEATSIKAAGK 381
           D      K+ L  K +   +  A K
Sbjct: 363 DDGKPKAKKPLDAKTKMIKLAKAKK 383

[Close]

BLAST of CmaCh07G009400 vs. TAIR 10
Match: AT3G09630.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 674.5 bits (1739), Expect = 5.4e-194
Identity = 339/406 (83.50%), Postives = 378/406 (93.10%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           MA AAARPLV++Q+L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+VYGTEG+K+VKAFRN+PGVE+ +VER
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           SDE+QSVV PIKK  KRA LKKNPLKNLN MLKLNPYAKTA+RM+LLAE QRVKAKKEKL
Sbjct: 301 SDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKL 360

Query: 361 DKKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ 407
            KKR   TKEEA +IKAAGK+WY+TMISDSDYTEFDNF+KWLG SQ
Sbjct: 361 AKKRKTVTKEEALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 406

[Close]

BLAST of CmaCh07G009400 vs. TAIR 10
Match: AT5G02870.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 671.8 bits (1732), Expect = 3.5e-193
Identity = 339/406 (83.50%), Postives = 376/406 (92.61%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           +A AAARPLV+VQ L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 2   VASAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 62  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 122 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 181

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+V+GTEGAK+VKAFRN+PGVE+ +VER
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 301

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           SDEVQSVV PIK   KRA LKKNPLKNLN M KLNPYAKTA+RM+LLAE  RVKAKKEKL
Sbjct: 302 SDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKL 361

Query: 361 DKKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ 407
           +KKR + TKEEA +IKAAGKAWYQTMISDSDYTEFDNF+KWLG SQ
Sbjct: 362 EKKRKVVTKEEAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 407

[Close]

BLAST of CmaCh07G009400 vs. TAIR 10
Match: AT3G09630.2 (Ribosomal protein L4/L1 family )

HSP 1 Score: 668.3 bits (1723), Expect = 3.9e-192
Identity = 338/406 (83.25%), Postives = 377/406 (92.86%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           MA AAARPLV++Q+L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 120

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 121 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 180

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+VYGTEG+K+VKAFRN+PGVE+ +VER
Sbjct: 181 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVYGTEGSKIVKAFRNLPGVELCHVER 240

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 300

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           SDE+QSVV PIKK  KRA LKKNPLKNLN MLKLNPYAKTA+RM+LLAE QRVKAKKEKL
Sbjct: 301 SDEIQSVVNPIKKDAKRAVLKKNPLKNLNVMLKLNPYAKTAKRMSLLAEAQRVKAKKEKL 360

Query: 361 DKKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ 407
            KKR   TK EA +IKAAGK+WY+TMISDSDYTEFDNF+KWLG SQ
Sbjct: 361 AKKRKTVTK-EALAIKAAGKSWYKTMISDSDYTEFDNFTKWLGASQ 405

[Close]

BLAST of CmaCh07G009400 vs. TAIR 10
Match: AT5G02870.2 (Ribosomal protein L4/L1 family )

HSP 1 Score: 665.6 bits (1716), Expect = 2.5e-191
Identity = 338/406 (83.25%), Postives = 375/406 (92.36%), Query Frame = 0


Query: 1   MAVAAARPLVSVQSLEGDMATDAAPGVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVS 60
           +A AAARPLV+VQ L+GDM+TD +  V LPDVM A +RPDIV+FVH+ IS NSRQPYAVS
Sbjct: 2   VASAAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 61

Query: 61  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120
           K+AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQ AFGNMCRGGRMFAPTKIWRRWHR++
Sbjct: 62  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWRRWHRRV 121

Query: 121 NVNQKRYAVVSAIAASAVPSLVLARGHRIESVPELPLVVSDSAEGVEKTSAAIKVLKQVG 180
           NVN KR+A+VSAIAA+AVP+LV+ARGH+IE+VPE+PLVVSDSAE VEKTSAAIKVLKQ+G
Sbjct: 122 NVNMKRHAIVSAIAATAVPALVMARGHKIENVPEMPLVVSDSAEAVEKTSAAIKVLKQIG 181

Query: 181 AFPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVER 240
           A+ DAEKAK+S  IRPGKGKMRNRRYISRKGPL+V+GTEGAK+VKAFRN+PGVE+ +VER
Sbjct: 182 AYDDAEKAKNSIGIRPGKGKMRNRRYISRKGPLVVFGTEGAKIVKAFRNLPGVELCHVER 241

Query: 241 LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKPSEKKKGYVLPRSKMVNADLSRIIN 300
           LNLLKLAPGGHLGRFVIWTKSAFEKL+SIYGSFEKPSEKKKGYVLPR+KMVNADL+RIIN
Sbjct: 242 LNLLKLAPGGHLGRFVIWTKSAFEKLESIYGSFEKPSEKKKGYVLPRAKMVNADLARIIN 301

Query: 301 SDEVQSVVKPIKKAVKRAPLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKL 360
           SDEVQSVV PIK   KRA LKKNPLKNLN M KLNPYAKTA+RM+LLAE  RVKAKKEKL
Sbjct: 302 SDEVQSVVNPIKDGSKRAVLKKNPLKNLNVMFKLNPYAKTAKRMSLLAEASRVKAKKEKL 361

Query: 361 DKKRNLTTKEEATSIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ 407
           +KKR + TK EA +IKAAGKAWYQTMISDSDYTEFDNF+KWLG SQ
Sbjct: 362 EKKRKVVTK-EAQAIKAAGKAWYQTMISDSDYTEFDNFTKWLGASQ 406

The following BLAST results are available for this feature:

BLAST of CmaCh07G009400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XF97	1.5e-201	88.89	60S ribosomal protein L4 OS=Prunus armeniaca OX=36596 GN=RPL4 PE=2 SV=1	[more]
Q9SF40	7.6e-193	83.50	60S ribosomal protein L4-1 OS=Arabidopsis thaliana OX=3702 GN=RPL4A PE=1 SV=1	[more]
P49691	4.9e-192	83.50	60S ribosomal protein L4-2 OS=Arabidopsis thaliana OX=3702 GN=RPL4D PE=1 SV=2	[more]
P08429	4.6e-121	58.44	60S ribosomal protein L4-A OS=Xenopus laevis OX=8355 GN=rpl4-a PE=2 SV=2	[more]
P02385	6.0e-121	58.18	60S ribosomal protein L4-B OS=Xenopus laevis OX=8355 GN=rpl4-b PE=2 SV=2	[more]

BLAST of CmaCh07G009400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09630.1	5.4e-194	83.50	Ribosomal protein L4/L1 family	[more]
AT5G02870.1	3.5e-193	83.50	Ribosomal protein L4/L1 family	[more]
AT3G09630.2	3.9e-192	83.25	Ribosomal protein L4/L1 family	[more]
AT5G02870.2	2.5e-191	83.25	Ribosomal protein L4/L1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 346..366
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..96
None	No IPR available	PANTHER	PTHR19431:SF6	BNAC03G35890D PROTEIN	coord: 3..406
None	No IPR available	PANTHER	PTHR19431	60S RIBOSOMAL PROTEIN L4	coord: 3..406
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 27..267 e-value: 3.1E-40 score: 137.9
IPR023574	Ribosomal protein L4 domain superfamily	GENE3D	3.40.1370.10		coord: 4..309 e-value: 3.9E-142 score: 474.8
IPR023574	Ribosomal protein L4 domain superfamily	SUPERFAMILY	52166	Ribosomal protein L4	coord: 10..268
IPR025755	60S ribosomal protein L4, C-terminal domain	PFAM	PF14374	Ribos_L4_asso_C	coord: 281..353 e-value: 5.5E-29 score: 100.0
IPR013000	Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site	PROSITE	PS00939	RIBOSOMAL_L1E	coord: 121..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G009400.1	CmaCh07G009400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome