CmaCh07G008290 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G008290
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionCOPII coat assembly protein SEC16, putative
LocationCma_Chr07: 3854995 .. 3855465 (+)
RNA-Seq ExpressionCmaCh07G008290
SyntenyCmaCh07G008290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA

mRNA sequence

ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA

Coding sequence (CDS)

ATGGCTGATTCCGCCGCACAAGAAACCTACGCAGCGCCGTCGTCACCTGCCTCGATTCTCAACCGCAGAACCTCGATTCCTTCCTCCGCTATCATGCCCCCACCAAACGTCGCCGTTTCCCCTCCTCTGTCCTCTCCGATCGACTTGAGGATCCTCTCCTCCAAATCCTCTTTTCAATCCTACACCTCTCTCAAGGACATCCTCCCCTCCGCCGCCTTCAACTCTCCCACTGCCGCATCTCCGGCCAACTCCGGCTACGAAATTTCGATCCGCAACCGCCTCGTTAAGCAAGCCGCTTGGGCTTATCTCCAACCTATGTCCGCTTCTTCCTATTCCACCGGCTCAAATATCTTCCACCGTTTCTGGCTCCGATTCTCCGCCGCGAATCCGATCGCTAATAGTCTTGGATTCATCAGAGGTAGTATCATTCCGGCCATAGTCCGAGTCATTCGGTTCTGCATTTGCTTGTGA

Protein sequence

MADSAAQETYAAPSSPASILNRRTSIPSSAIMPPPNVAVSPPLSSPIDLRILSSKSSFQSYTSLKDILPSAAFNSPTAASPANSGYEISIRNRLVKQAAWAYLQPMSASSYSTGSNIFHRFWLRFSAANPIANSLGFIRGSIIPAIVRVIRFCICL
Homology
BLAST of CmaCh07G008290 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-12
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 15  SPASILNRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSK-SSFQSYTSLKDILP 74
           SPA+ L R  SI +   + PP    ++A +PP  S  D  ++S K SSF +YTSL+DI+ 
Sbjct: 8   SPATQLRRTKSISNMTTLTPPEVPFDIASTPP--SSFDYELISVKPSSFVAYTSLRDIIS 67

Query: 75  S---AAFNSPT---AASP--ANSGYEISIRNRLVKQAAWAYLQP--MSASSYSTGSNIFH 128
           S   ++ N P+   + SP  + +  +ISIRNRLVKQAA +YLQP  +++S  S GS  F 
Sbjct: 68  SPINSSLNLPSINGSCSPVISTAAGDISIRNRLVKQAALSYLQPTVLTSSDDSAGSQFFR 127

BLAST of CmaCh07G008290 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-12
Identity = 56/128 (43.75%), Postives = 78/128 (60.94%), Query Frame = 0

Query: 15  SPASILNRRTSIPSSAIMPPP----NVAVSPPLSSPIDLRILSSK-SSFQSYTSLKDILP 74
           SPA+ L R  SI +   + PP    ++A +PP  S  D  ++S K SSF +YTSL+DI+ 
Sbjct: 8   SPATQLRRTKSISNMTTLTPPEVPFDIASTPP--SSFDYELISVKPSSFVAYTSLRDIIS 67

Query: 75  S---AAFNSPT---AASP--ANSGYEISIRNRLVKQAAWAYLQP--MSASSYSTGSNIFH 128
           S   ++ N P+   + SP  + +  +ISIRNRLVKQAA +YLQP  +++S  S GS  F 
Sbjct: 68  SPINSSLNLPSINGSCSPVISTAAGDISIRNRLVKQAALSYLQPTVLTSSDDSAGSQFFR 127

BLAST of CmaCh07G008290 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-07
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 0

Query: 43  LSSPIDLRIL----SSKSSFQSYTSLKDILPSAA--FNSPT---AASPANSGYEISIRNR 102
           +S  +DL ++    SS+     YTSLKDILPS++   +SP    A + A SG  I+IRNR
Sbjct: 19  VSQTLDLELVSVNKSSEDPLPCYTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNR 78

Query: 103 LVKQAAWAYLQPMSASSYSTGS 116
           LVKQAA +YLQP + +  S  S
Sbjct: 79  LVKQAACSYLQPSTPTPSSNPS 100

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
AT5G06280.11.8e-1243.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT5G06280.31.8e-1243.75unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G52520.13.9e-0746.34unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34569EXPRESSED PROTEINcoord: 14..152
NoneNo IPR availablePANTHERPTHR34569:SF2EXPRESSED PROTEINcoord: 14..152

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G008290.1CmaCh07G008290.1mRNA