CmaCh07G005840 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G005840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionRhamnogalacturonan endolyase
LocationCma_Chr07: 2522787 .. 2523651 (-)
RNA-Seq ExpressionCmaCh07G005840
SyntenyCmaCh07G005840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGAAAGGCAAAAAGAGAAGCACACAGCCATGGATTTGGAAGCTTGAGCTCTCATCAATGGCGCTCCTTCTCTTATTCATCTCCACTTTAACTCTCGCCAAAGCACTGCCACAACAGCAGCTTTCGTCCCCGTCGTTGGCACCCGACGTAGCCCTACAATGGCAGATTCGTGGACTGGTGCCAATCCTTCTTCTCCCTCTTCTACCTATATTTCTTTTAAGACTTCCCCTCATTCGTTTTTAAAACAAGTTTGTGTCATTTTTAGACTTTTACTCAAAGTTTTTAAAATGGACACGTTAGTTTCTATACTTCTGTAAGAAATGTTTTGTTATCCTCTCTAATCGACGATGTGGGGTCAACAATCCACCCCATTTGAAGTCCAGTATCCTTGCTTACACTCGTTCCCTTCTCTAATCACTTCCTCTTTGAGCTTTTCCTTTCGAACTTCTCCTCAAGGTTTAAAAAACGAGTTTGTTAGTAAGAAGTTTCCACACTCTTACAAGAAATGTTTTGTTCTTCTCTTCTATGGATAACCGAAAATCTTAAATTATTTAGCCCATATAGTTTTTTTAATGATTGAAATTTTGCTAACACGGGTGGCAATGGACAATGGGTTGATTCTGAGTCACTTTTTCTCACGAAGGCAACGTTATTGGCATAAAATACAATAACATGGATAACATACTTGATTTTCACAATGCATACAATAACAGAGCGTAAATATCTAAATTTTTCTCTTTTATTTATTTATTATTATTACATTATAATATTCTTATAATTAGACTAAATTTATTATTGACATGTTGCGTAGATATTTGGATTTGGCTTGGAACACCCCAAATCAGACAAGTATTATTGA

mRNA sequence

ATGGAGAAGAAAGGCAAAAAGAGAAGCACACAGCCATGGATTTGGAAGCTTGAGCTCTCATCAATGGCGCTCCTTCTCTTATTCATCTCCACTTTAACTCTCGCCAAAGCACTGCCACAACAGCAGCTTTCGTCCCCGTCGTTGGCACCCGACGTAGCCCTACAATGGCAGATTCGTGGACTGATATTTGGATTTGGCTTGGAACACCCCAAATCAGACAAGTATTATTGA

Coding sequence (CDS)

ATGGAGAAGAAAGGCAAAAAGAGAAGCACACAGCCATGGATTTGGAAGCTTGAGCTCTCATCAATGGCGCTCCTTCTCTTATTCATCTCCACTTTAACTCTCGCCAAAGCACTGCCACAACAGCAGCTTTCGTCCCCGTCGTTGGCACCCGACGTAGCCCTACAATGGCAGATTCGTGGACTGATATTTGGATTTGGCTTGGAACACCCCAAATCAGACAAGTATTATTGA

Protein sequence

MEKKGKKRSTQPWIWKLELSSMALLLLFISTLTLAKALPQQQLSSPSLAPDVALQWQIRGLIFGFGLEHPKSDKYY
Homology
[Close]
BLAST of CmaCh07G005840 vs. ExPASy TrEMBL
Match: A0A6J1HHQ6 (Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111463085 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 5.0e-08
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 22 MALLLLFISTLTLAKALPQQQLSSPSLAPDVALQWQIRGLI 63
          MALLLLFI TL+LAKALPQQQ SSP LAPDVALQWQIRG +
Sbjct: 1  MALLLLFIFTLSLAKALPQQQHSSPPLAPDVALQWQIRGQV 41

[Close]
BLAST of CmaCh07G005840 vs. NCBI nr
Match: KAG7026879.1 (rhiE, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.4 bits (259), Expect = 4.5e-19
Identity = 53/62 (85.48%), Postives = 57/62 (91.94%), Query Frame = 0 

Query: 1  MEKKGKKRSTQPWIWKLELSSMALLLLFISTLTLAKALPQQQLSSPSLAPDVALQWQIRG 60
          MEKK ++RSTQPWIWKLELSSMALLLLFI TL+LAKALPQQQ SSP LAPDVALQWQIRG
Sbjct: 1  MEKKDRRRSTQPWIWKLELSSMALLLLFIFTLSLAKALPQQQHSSPPLAPDVALQWQIRG 60

Query: 61 LI 63
           +
Sbjct: 61 QV 62

[Close]
BLAST of CmaCh07G005840 vs. NCBI nr
Match: KAG6594914.1 (hypothetical protein SDJN03_11467, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 22 MALLLLFISTLTLAKALPQQQLSSPSLAPDVALQWQIRGLI 63
          MALLLLFI TL+LAKALPQQQ SSP LAPDVALQWQIRG +
Sbjct: 1  MALLLLFIFTLSLAKALPQQQHSSPPLAPDVALQWQIRGQV 41

[Close]
BLAST of CmaCh07G005840 vs. NCBI nr
Match: XP_022962664.1 (uncharacterized protein LOC111463085 [Cucurbita moschata])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 0 

Query: 22 MALLLLFISTLTLAKALPQQQLSSPSLAPDVALQWQIRGLI 63
          MALLLLFI TL+LAKALPQQQ SSP LAPDVALQWQIRG +
Sbjct: 1  MALLLLFIFTLSLAKALPQQQHSSPPLAPDVALQWQIRGQV 41

[Close]
BLAST of CmaCh07G005840 vs. NCBI nr
Match: XP_023518133.1 (probable rhamnogalacturonate lyase B [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 7.4e-06
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 22 MALLLLFISTLTLAKALPQQQLSSPSLAPDVALQWQIRGLI 63
          M LLLLFI TL+LAKA PQQQ SSP LAPDV LQWQIRG +
Sbjct: 1  MVLLLLFIFTLSLAKARPQQQHSSPPLAPDVFLQWQIRGQV 41

The following BLAST results are available for this feature:
BLAST of CmaCh07G005840 vs.
Match NameE-valueIdentityDescription
BLAST of CmaCh07G005840 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HHQ65.0e-0885.37Rhamnogalacturonan endolyase OS=Cucurbita moschata OX=3662 GN=LOC111463085 PE=3 ... [more]
BLAST of CmaCh07G005840 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7026879.14.5e-1985.48rhiE, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6594914.11.0e-0785.37hypothetical protein SDJN03_11467, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022962664.11.0e-0785.37uncharacterized protein LOC111463085 [Cucurbita moschata][more]
XP_023518133.17.4e-0678.05probable rhamnogalacturonate lyase B [Cucurbita pepo subsp. pepo][more]
BLAST of CmaCh07G005840 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G005840.1CmaCh07G005840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0102210 rhamnogalacturonan endolyase activity