CmaCh07G005700 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh07G005700
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionMADS-box protein JOINTLESS-like
LocationCma_Chr07: 2477419 .. 2481079 (+)
RNA-Seq ExpressionCmaCh07G005700
SyntenyCmaCh07G005700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCTAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCCGTTTTATGCGACGCTGATGTTGCCCTCATTATCTTCTCCACCACCGGGAAGCTGTTTGAGTACTCCAGCTCAAGGTTTCACTCCGCTCCTCTCTTTTATTGCAGAAACCTAAACTTCAATCGGCCTTTTACGATTTCTGAGTTTTCCTGCGTTTTCTGAACTCCTCTGATTCCATGTTCAAAGTAAAGTGATACTAAAAATGGCGAGAACGAACCGTGACAGAAATGAGAAGCAAAGTGTTGATAAGATCGTATGTATTGGCTTACAACAATCTAACGGAAAAATGAAGAAGAAAATATTCATCAACTCGATGAAGGAAATAGAGCACTCTTGTAAAGCAGTGTCTCATAAAATTTGTTCTAAACCAACAGAAAAGACTGGATTAAAATGTGAGATCTCACATCGGACAGGAGAAAGAAATATTCTTTAATTGCGTGAAACTCTCCGTAACAGATTTAGATTTAGGCGAAAAACTCAAAAAGAACTATCTACTACTTTTAAGCTTGGGCTGTCAGGTGACAGAACTTGCTAGCCACTCAATAATAACTTGCTGCGGTCTATTATACTCAACTCTAGCTGTTTATGTTGATTAATATTGTCTCTAATCATATAGACTGTAGTGATAAACATGAATTCATTATCATTGATTTTTTCTTACTTTAATCTCTTCCTGGCTCTTTGAGCTTATCTCTAGCTGTTTATGTGGATTCACTGATTGTTATCTGTATCTGACTTTCTGTAGTATGAAGGGAATTATAGAAAGACATAACTTGCACTCTAAGAACCTCCAGAAATTGGAACGACCATCCCTTGAACTACAGGTTTGGCGTTTTCTTTCGCTCTAGGGATTTAAATGGCATGTCTTTCATCAATATTCACTTTTATAACTATTATCTAACGATAAAATCAATATTATTGTATGGACTGGACGCCGAATAACATCGCTCATAGTTTTGGCATTTTAAAACCGGAAACGACCTTATTTTCTTGAAGACCACAAATCATCGTGAAAGCTTTTTTTTTTTTTTTTTTTCTTTCATTGATTTTTTATTTTCTAAAAAAATAGAAACATATTTAAATTTAGTTTCTAAAGCAAGCAGCACTGAACTGTAGAAATTTGTTTTTCTACTACTCTAGTCTACCTTATATTCTGTTAAACTAATAGCCGTTAGTTCTATCCATCTAGTACATTTTTTTTCTTTGGAACTCTTTTATCCTCTCCCCCCATATTTTTTAAATTTAATAACCGTGTTCGAATTTGAGATGATGATTCTGAAATTTATATCAAAAGACCGAAAGCAATGCTAGAAAGAAGGATCAAAGGTTTATATTTTGCTGGTGGTTATTTTTTTGTGTAAAATGGTAAAATAATACAGATTTTGTTCTTAGTAAATGCACTTAAATCAATATTCAAAAGGAGAGATGCGAGTTGATTATATTTTTAACTTGGGGACTTGGATGTTTATAACCCAATGATGGCTCCCTTCCTCTCGTTTGCTGAAATATTGTTTACACTGTCACGGTTTCAGCTCGTTGAAAACAGCAATTACACTCGATTAAACAAGGAAATTGCAGAGAAAACTCATCAGCTAAGGTATCTACTTTTTTAGACGAGAAGTTGTTTGTTTATTATTTGTTTTTGTACTACATATTTAGATGTAATGTTATGAACCTCATACTTCAAGAGAAGGATTAGATGTTGAGCTATACTCGTGTTGGTTGATCTTATGGTTAGTTTACCCACTTAGATTAGCAAAGTCATTTTTAAACTCCAAACTCAATTGCGTGTTACAATTTGAACATACTTTGTATGCTTGGTTTTGTAGTTAGGGTTACGTTTGTGATTAGGTTTGGGCTCTTTTATTTGTTTGATTTTCTGGTTTGGTTCGAGTATTTTCTTGATTAGATTTAGAGAGTTTTTTTACGTGTTTTGTTAGTTGAATATATTTTATATGATTTATAAACTGTTTCACGGGCAATTTTCAAATTAGTTTTGAGGCATTAATTACAACCCTTGTACAAGTTCAAGGGTTTTAATGGATGAGATTAAAAGTTCAAGAATTAAAAACAAGTCACTCACTTGATGAAAAAGAGAAGAAGTTGAACTTTCGTAATCCTTAAATGTACAAGGGAAATTGCAAATTCTTTTTTTTTATAATGTGTAAGTGGTAGTCAGATAATAACGGTCTCTTCAGGCGAAATTTTCTATTACACGAACACACTGCTAGATAAATCCAAGCACATACACAAACACGATTAAACATGTTGATAATTTAGGCAAATGAGGGGCGAAGAGCTGCAAACGTTGAATACTGATGAACTGCAGCAGCTAGAGAAGTCACTGGAGTTTGGATTGAGCCGTGTAATGGAGAAAAAGGTATTTTCCTTTTCTTCACAGTTCATAATAAAATCCCCTTTTCTTCTAACGTACAGTTTCGTTTGTGTCCCAGGGCGAAAAGATCATGAAGGAGATCACTGATCTTCAAAGAAAGGTCAAGTACCATCTTCCAATAATAAGGCTATTGGGCAAAGGACCCATATTAGTAGAATCTATTGCAACCTTCCTATAATACTTGATAATGTCGCGTATTTAATTTAAACCATAATCATAAATGTTAGCTATTTTTAAAATAATTTTATAATAAACCGTTCATTTCCAGTATGTATGCATGAGAATTTTAATTTATTATAATTAAATAAAGTGAAGCTAAGCTCGAGGTTTTATGTGCAAGCAGTCGGCCGAGCTGGTGGAAGAGAATAAGCGACTGAAAAAACAAGTAAGAAAATTCCTTTTCGCAGCATTGTAAATTGTATCATTTTTAGCTCTTTTGCGACTTACAGCCGGTGATGTGCAGGCAGAGAAAATGGATGGCGTGAGGCACTTCGGCGTAGAGCCCGAGATTGTGGTCGTGGAAGATGGCCAGTCCTCGAACTCAGTCACTGAAGCTTGTGTCACCAACTCCAATGGCCCGGCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAGCTAGGGTAACTTCATTCTCAATGTCTTAAAATTGATTTAAATTATTTTCTAGTAATGTGTTCATTAGACTGGTCAAGTTTTAGGTGATTGAGTGGTCATTATTTAACCCGTGGATGCAGGCTGGCATATTCCGGGTAATGGTGATAGAACAGGAAGATGAACAGTCACTGTAGCTAGCAAAAGGCAGTTCATAAACATAATTATATACGGGTTAGTTGAGTAATATAAACCCATCTAAATCTTAATCAACCAATGCATGAGGTTGCATTTTCCAGAATTCAGTGTGCACCGTTTTAGCGAATCAAGTTAGTCAGCAACTGGGCTTGATGAAGCCTTGGTGTGTAGGTGAACCACTTGTAATGTTCTGGGGGTAAGGATTTAATGGATGCTTGTAATGATCGAGTGTTGCTGGTGACATGTTGCCCTTGTTTTGTAAAGCAGACTCGTAATTTTAGTTTGAATCAATGACAGTTGCCTGTACTTTTGAACGGCTTAGTGCGATAATATTGCTATCTCCATTATAGTAATACGAATTTTAAACGAGT

mRNA sequence

ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCTAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCCGTTTTATGCGACGCTGATGTTGCCCTCATTATCTTCTCCACCACCGGGAAGCTGTTTGAGTACTCCAGCTCAAGTATGAAGGGAATTATAGAAAGACATAACTTGCACTCTAAGAACCTCCAGAAATTGGAACGACCATCCCTTGAACTACAGCTCGTTGAAAACAGCAATTACACTCGATTAAACAAGGAAATTGCAGAGAAAACTCATCAGCTAAGGCAAATGAGGGGCGAAGAGCTGCAAACGTTGAATACTGATGAACTGCAGCAGCTAGAGAAGTCACTGGAGTTTGGATTGAGCCGTGTAATGGAGAAAAAGGGCGAAAAGATCATGAAGGAGATCACTGATCTTCAAAGAAAGGTCAAGTACCATCTTCCAATAATAAGGCTATTGGGCAAAGGACCCATATTAGTAGAATCTATTGCAACCTTCCTATAATACTTGATAATGTCGCGTATTTAATTTAAACCATAATCATAAATGTTAGCTATTTTTAAAATAATTTTATAATAAACCGTTCATTTCCAGTATGTATGCATGAGAATTTTAATTTATTATAATTAAATAAAGTGAAGCTAAGCTCGAGGTTTTATGTGCAAGCAGTCGGCCGAGCTGGTGGAAGAGAATAAGCGACTGAAAAAACAAGCAGAGAAAATGGATGGCGTGAGGCACTTCGGCGTAGAGCCCGAGATTGTGGTCGTGGAAGATGGCCAGTCCTCGAACTCAGTCACTGAAGCTTGTGTCACCAACTCCAATGGCCCGGCTCAAGATCTGGAAAGCTCAGACACATCTCTGAAGCTAGGGCTGGCATATTCCGGGTAATGGTGATAGAACAGGAAGATGAACAGTCACTGTAGCTAGCAAAAGGCAGTTCATAAACATAATTATATACGGGTTAGTTGAGTAATATAAACCCATCTAAATCTTAATCAACCAATGCATGAGGTTGCATTTTCCAGAATTCAGTGTGCACCGTTTTAGCGAATCAAGTTAGTCAGCAACTGGGCTTGATGAAGCCTTGGTGTGTAGGTGAACCACTTGTAATGTTCTGGGGGTAAGGATTTAATGGATGCTTGTAATGATCGAGTGTTGCTGGTGACATGTTGCCCTTGTTTTGTAAAGCAGACTCGTAATTTTAGTTTGAATCAATGACAGTTGCCTGTACTTTTGAACGGCTTAGTGCGATAATATTGCTATCTCCATTATAGTAATACGAATTTTAAACGAGT

Coding sequence (CDS)

ATGGCGAAGGAGAAAATCCAGATCAGGAAGATCGATAACGCGACGGCGAGGCAGGTCACCTTCTCTAAGCGCCGGAGGGGACTTTTTAAGAAAGCCAAAGAGCTATCCGTTTTATGCGACGCTGATGTTGCCCTCATTATCTTCTCCACCACCGGGAAGCTGTTTGAGTACTCCAGCTCAAGTATGAAGGGAATTATAGAAAGACATAACTTGCACTCTAAGAACCTCCAGAAATTGGAACGACCATCCCTTGAACTACAGCTCGTTGAAAACAGCAATTACACTCGATTAAACAAGGAAATTGCAGAGAAAACTCATCAGCTAAGGCAAATGAGGGGCGAAGAGCTGCAAACGTTGAATACTGATGAACTGCAGCAGCTAGAGAAGTCACTGGAGTTTGGATTGAGCCGTGTAATGGAGAAAAAGGGCGAAAAGATCATGAAGGAGATCACTGATCTTCAAAGAAAGGTCAAGTACCATCTTCCAATAATAAGGCTATTGGGCAAAGGACCCATATTAGTAGAATCTATTGCAACCTTCCTATAA

Protein sequence

MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNTDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKVKYHLPIIRLLGKGPILVESIATFL
Homology
BLAST of CmaCh07G005700 vs. ExPASy Swiss-Prot
Match: Q9FUY6 (MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.6e-62
Identity = 126/156 (80.77%), Postives = 149/156 (95.51%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MA+EKIQI+KIDN+TARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLF+YSSS
Sbjct: 1   MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMK I+ER +LHSKNL+KL++PSLELQLVENSNY+RL+KEI+EK+H+LRQMRGEELQ LN
Sbjct: 61  SMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +ELQQLE+SLE GLSRV+E+KG+KIM+EI  LQ+K
Sbjct: 121 IEELQQLERSLETGLSRVIERKGDKIMREINQLQQK 156

BLAST of CmaCh07G005700 vs. ExPASy Swiss-Prot
Match: Q9FVC1 (MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 9.9e-60
Identity = 121/156 (77.56%), Postives = 146/156 (93.59%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MA+EKIQIRKIDNATARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLFE+ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMK ++ERHNL SKNL+KL++PSLELQLVENS++ R++KEIA+K+H+LRQMRGEELQ L+
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +ELQQLEK+LE GL+RV+E K +KIM EI++LQ+K
Sbjct: 121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKK 156

BLAST of CmaCh07G005700 vs. ExPASy Swiss-Prot
Match: O82794 (MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.8e-46
Identity = 103/157 (65.61%), Postives = 130/157 (82.80%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MA+EKI+I+KIDN TARQVTFSKRRRG+FKKA ELSVLCDADVALIIFS TGKLFE+SSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  SMKGIIERHNLHSKNLQKL-ERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTL 120
            M+ I+ R++LH+ N+ KL + PS  L+L EN N +RL+KE+ +KT QLR++RGE+L  L
Sbjct: 61  RMRDILGRYSLHASNINKLMDPPSTHLRL-ENCNLSRLSKEVEDKTKQLRKLRGEDLDGL 120

Query: 121 NTDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
           N +ELQ+LEK LE GLSRV EKKGE +M +I  L+++
Sbjct: 121 NLEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKR 156

BLAST of CmaCh07G005700 vs. ExPASy Swiss-Prot
Match: Q9XJ66 (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS22 PE=2 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-45
Identity = 99/156 (63.46%), Postives = 131/156 (83.97%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MA+E+ +I++I++A ARQVTFSKRRRGLFKKA+ELSVLCDADVALI+FS+TGKL  ++SS
Sbjct: 1   MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SM  II+++N HS NL K E+PSL+L L E+S Y  LN+++AE + +LRQMRGEEL+ L+
Sbjct: 61  SMNEIIDKYNTHSNNLGKAEQPSLDLNL-EHSKYAHLNEQLAEASLRLRQMRGEELEGLS 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            DELQQLEK+LE GL RVM  K ++ M++I++LQRK
Sbjct: 121 IDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRK 155

BLAST of CmaCh07G005700 vs. ExPASy Swiss-Prot
Match: Q5K4R0 (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MADS47 PE=1 SV=3)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-42
Identity = 92/154 (59.74%), Postives = 123/154 (79.87%), Query Frame = 0

Query: 3   KEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSSSM 62
           +E+I IR+IDN  ARQVTFSKRRRGLFKKA+ELS+LCDA+V L++FS TGKLF+++S+SM
Sbjct: 22  RERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSM 81

Query: 63  KGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLNTD 122
           + II+R+N HSK LQ+ E   L+LQ  ++S   RL +E+AE + +LRQMRGEEL  LN +
Sbjct: 82  EQIIDRYNSHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVE 141

Query: 123 ELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
           +LQ+LEKSLE GL  V++ K +KI+ EI  L+RK
Sbjct: 142 QLQELEKSLESGLGSVLKTKSKKILDEIDGLERK 175

BLAST of CmaCh07G005700 vs. ExPASy TrEMBL
Match: A0A6J1KUX0 (MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 6.7e-75
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
           TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK
Sbjct: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 156

BLAST of CmaCh07G005700 vs. ExPASy TrEMBL
Match: A0A6J1HEK8 (MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 9.6e-74
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            DELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK
Sbjct: 121 IDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 156

BLAST of CmaCh07G005700 vs. ExPASy TrEMBL
Match: A0A1S3B1C2 (MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 2.0e-71
Identity = 150/156 (96.15%), Postives = 153/156 (98.08%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFS TGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +ELQQLEKSLE GLSRVMEKKGE+IMKEITDLQRK
Sbjct: 121 IEELQQLEKSLESGLSRVMEKKGERIMKEITDLQRK 156

BLAST of CmaCh07G005700 vs. ExPASy TrEMBL
Match: A0A6J1BWE4 (MADS-box protein JOINTLESS-like OS=Momordica charantia OX=3673 GN=LOC111005943 PE=4 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.1e-69
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFS TGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSATGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERH+LHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQ LN
Sbjct: 61  SMKGIIERHHLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQALN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +ELQQLEKSLE GLSRVMEKKGE+IMKEI DLQRK
Sbjct: 121 IEELQQLEKSLESGLSRVMEKKGERIMKEINDLQRK 156

BLAST of CmaCh07G005700 vs. ExPASy TrEMBL
Match: A0A6J1GF16 (MADS-box protein SVP-like OS=Cucurbita moschata OX=3662 GN=LOC111453602 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.1e-68
Identity = 144/156 (92.31%), Postives = 151/156 (96.79%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKE+IQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALI+FS TGKLFE+SSS
Sbjct: 1   MAKERIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIVFSATGKLFEFSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKT QLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTRQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +ELQQLEKSLE GLSRVMEKKGE+IM EI+DLQRK
Sbjct: 121 IEELQQLEKSLECGLSRVMEKKGERIMTEISDLQRK 156

BLAST of CmaCh07G005700 vs. NCBI nr
Match: XP_023003989.1 (MADS-box protein JOINTLESS-like [Cucurbita maxima])

HSP 1 Score: 290.0 bits (741), Expect = 1.4e-74
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
           TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK
Sbjct: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 156

BLAST of CmaCh07G005700 vs. NCBI nr
Match: KAG6594905.1 (O-fucosyltransferase 31, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            DELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK
Sbjct: 121 IDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 156

BLAST of CmaCh07G005700 vs. NCBI nr
Match: XP_023517620.1 (MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            DELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK
Sbjct: 121 IDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 156

BLAST of CmaCh07G005700 vs. NCBI nr
Match: KAG7026868.1 (MADS-box protein JOINTLESS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS
Sbjct: 79  MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 138

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 139 SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 198

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            DELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK
Sbjct: 199 IDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 234

BLAST of CmaCh07G005700 vs. NCBI nr
Match: XP_022962900.1 (MADS-box protein JOINTLESS-like [Cucurbita moschata] >XP_022962901.1 MADS-box protein JOINTLESS-like [Cucurbita moschata])

HSP 1 Score: 286.2 bits (731), Expect = 2.0e-73
Identity = 154/156 (98.72%), Postives = 155/156 (99.36%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS
Sbjct: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMKGIIERHNLHSKNLQKLE+PSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN
Sbjct: 61  SMKGIIERHNLHSKNLQKLEQPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            DELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK
Sbjct: 121 IDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 156

BLAST of CmaCh07G005700 vs. TAIR 10
Match: AT2G22540.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 231.1 bits (588), Expect = 7.1e-61
Identity = 121/156 (77.56%), Postives = 146/156 (93.59%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MA+EKIQIRKIDNATARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLFE+ SS
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEFCSS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMK ++ERHNL SKNL+KL++PSLELQLVENS++ R++KEIA+K+H+LRQMRGEELQ L+
Sbjct: 61  SMKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +ELQQLEK+LE GL+RV+E K +KIM EI++LQ+K
Sbjct: 121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKK 156

BLAST of CmaCh07G005700 vs. TAIR 10
Match: AT2G22540.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 218.8 bits (556), Expect = 3.6e-57
Identity = 117/156 (75.00%), Postives = 142/156 (91.03%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MA+EKIQIRKIDNATARQVTFSKRRRGLFKKA+ELSVLCDADVALIIFS+TGKLF+    
Sbjct: 1   MAREKIQIRKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFD---- 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
            MK ++ERHNL SKNL+KL++PSLELQLVENS++ R++KEIA+K+H+LRQMRGEELQ L+
Sbjct: 61  -MKEVLERHNLQSKNLEKLDQPSLELQLVENSDHARMSKEIADKSHRLRQMRGEELQGLD 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +ELQQLEK+LE GL+RV+E K +KIM EI++LQ+K
Sbjct: 121 IEELQQLEKALETGLTRVIETKSDKIMSEISELQKK 151

BLAST of CmaCh07G005700 vs. TAIR 10
Match: AT4G24540.1 (AGAMOUS-like 24 )

HSP 1 Score: 186.4 bits (472), Expect = 2.0e-47
Identity = 103/157 (65.61%), Postives = 130/157 (82.80%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           MA+EKI+I+KIDN TARQVTFSKRRRG+FKKA ELSVLCDADVALIIFS TGKLFE+SSS
Sbjct: 1   MAREKIRIKKIDNITARQVTFSKRRRGIFKKADELSVLCDADVALIIFSATGKLFEFSSS 60

Query: 61  SMKGIIERHNLHSKNLQKL-ERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTL 120
            M+ I+ R++LH+ N+ KL + PS  L+L EN N +RL+KE+ +KT QLR++RGE+L  L
Sbjct: 61  RMRDILGRYSLHASNINKLMDPPSTHLRL-ENCNLSRLSKEVEDKTKQLRKLRGEDLDGL 120

Query: 121 NTDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
           N +ELQ+LEK LE GLSRV EKKGE +M +I  L+++
Sbjct: 121 NLEELQRLEKLLESGLSRVSEKKGECVMSQIFSLEKR 156

BLAST of CmaCh07G005700 vs. TAIR 10
Match: AT4G37940.1 (AGAMOUS-like 21 )

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-28
Identity = 70/156 (44.87%), Postives = 106/156 (67.95%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           M + KI I++ID++T+RQVTFSKRR+GL KKAKEL++LCDA+V LIIFS+TGKL++++SS
Sbjct: 1   MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           SMK +I+R+N      Q+L  P+ E++  +      L +E+       RQM GE+L  L+
Sbjct: 61  SMKSVIDRYNKSKIEQQQLLNPASEVKFWQREAAV-LRQELHALQENHRQMMGEQLNGLS 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
            +EL  LE  +E  L  +  +K + + +EI +L +K
Sbjct: 121 VNELNSLENQIEISLRGIRMRKEQLLTQEIQELSQK 155

BLAST of CmaCh07G005700 vs. TAIR 10
Match: AT2G22630.1 (AGAMOUS-like 17 )

HSP 1 Score: 121.7 bits (304), Expect = 6.0e-28
Identity = 72/156 (46.15%), Postives = 101/156 (64.74%), Query Frame = 0

Query: 1   MAKEKIQIRKIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSSS 60
           M + KI I+KID++T+RQVTFSKRR+GL KKAKEL++LCDA+V LIIFS T KL++++SS
Sbjct: 1   MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASS 60

Query: 61  SMKGIIERHNLHSKNLQKLERPSLELQLVENSNYTRLNKEIAEKTHQLRQMRGEELQTLN 120
           S+K  IER N      Q+L  P+ E++  +    T L +E+       RQ+ G EL  L+
Sbjct: 61  SVKSTIERFNTAKMEEQELMNPASEVKFWQREAET-LRQELHSLQENYRQLTGVELNGLS 120

Query: 121 TDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRK 157
             ELQ +E  LE  L  +  K+ + +  EI +L RK
Sbjct: 121 VKELQNIESQLEMSLRGIRMKREQILTNEIKELTRK 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FUY61.6e-6280.77MADS-box protein JOINTLESS OS=Solanum lycopersicum OX=4081 GN=J PE=1 SV=1[more]
Q9FVC19.9e-6077.56MADS-box protein SVP OS=Arabidopsis thaliana OX=3702 GN=SVP PE=1 SV=1[more]
O827942.8e-4665.61MADS-box protein AGL24 OS=Arabidopsis thaliana OX=3702 GN=AGL24 PE=1 SV=1[more]
Q9XJ664.1e-4563.46MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Q5K4R01.4e-4259.74MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica OX=39947 GN=MAD... [more]
Match NameE-valueIdentityDescription
A0A6J1KUX06.7e-75100.00MADS-box protein JOINTLESS-like OS=Cucurbita maxima OX=3661 GN=LOC111497438 PE=4... [more]
A0A6J1HEK89.6e-7498.72MADS-box protein JOINTLESS-like OS=Cucurbita moschata OX=3662 GN=LOC111463267 PE... [more]
A0A1S3B1C22.0e-7196.15MADS-box protein SVP-like OS=Cucumis melo OX=3656 GN=LOC103484931 PE=4 SV=1[more]
A0A6J1BWE41.1e-6994.23MADS-box protein JOINTLESS-like OS=Momordica charantia OX=3673 GN=LOC111005943 P... [more]
A0A6J1GF162.1e-6892.31MADS-box protein SVP-like OS=Cucurbita moschata OX=3662 GN=LOC111453602 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
XP_023003989.11.4e-74100.00MADS-box protein JOINTLESS-like [Cucurbita maxima][more]
KAG6594905.12.0e-7398.72O-fucosyltransferase 31, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023517620.12.0e-7398.72MADS-box protein JOINTLESS-like [Cucurbita pepo subsp. pepo][more]
KAG7026868.12.0e-7398.72MADS-box protein JOINTLESS, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022962900.12.0e-7398.72MADS-box protein JOINTLESS-like [Cucurbita moschata] >XP_022962901.1 MADS-box pr... [more]
Match NameE-valueIdentityDescription
AT2G22540.17.1e-6177.56K-box region and MADS-box transcription factor family protein [more]
AT2G22540.23.6e-5775.00K-box region and MADS-box transcription factor family protein [more]
AT4G24540.12.0e-4765.61AGAMOUS-like 24 [more]
AT4G37940.11.2e-2844.87AGAMOUS-like 21 [more]
AT2G22630.16.0e-2846.15AGAMOUS-like 17 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 94..114
NoneNo IPR availablePANTHERPTHR48019:SF101MADS-BOX PROTEIN SVP ISOFORM X1coord: 1..157
NoneNo IPR availablePANTHERPTHR48019SERUM RESPONSE FACTOR HOMOLOGcoord: 1..157
IPR002100Transcription factor, MADS-boxPRINTSPR00404MADSDOMAINcoord: 38..59
score: 63.18
coord: 23..38
score: 77.22
coord: 3..23
score: 52.46
IPR002100Transcription factor, MADS-boxSMARTSM00432madsneu2coord: 1..60
e-value: 8.0E-38
score: 141.6
IPR002100Transcription factor, MADS-boxPFAMPF00319SRF-TFcoord: 10..57
e-value: 2.0E-25
score: 88.1
IPR002100Transcription factor, MADS-boxPROSITEPS50066MADS_BOX_2coord: 1..61
score: 29.92667
IPR036879Transcription factor, MADS-box superfamilyGENE3D3.40.1810.10coord: 13..82
e-value: 6.7E-29
score: 101.5
IPR036879Transcription factor, MADS-box superfamilySUPERFAMILY55455SRF-likecoord: 3..80
IPR002487Transcription factor, K-boxPFAMPF01486K-boxcoord: 92..158
e-value: 1.8E-13
score: 50.5
IPR002487Transcription factor, K-boxPROSITEPS51297K_BOXcoord: 87..181
score: 10.839657
IPR033896MADS MEF2-likeCDDcd00265MADS_MEF2_likecoord: 2..77
e-value: 7.29437E-40
score: 128.439

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh07G005700.1CmaCh07G005700.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0017148 negative regulation of translation
biological_process GO:0045944 positive regulation of transcription by RNA polymerase II
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
molecular_function GO:0000900 translation repressor activity, mRNA regulatory element binding
molecular_function GO:0003677 DNA binding