CmaCh07G004860 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G004860
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Unknown protein
Location	Cma_Chr07: 2111590 .. 2112787 (-)
RNA-Seq Expression	CmaCh07G004860
Synteny	CmaCh07G004860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGGGACTGGGGGGGCGTGGTAAAAAACAAAGAAGACAGGCCTAGAGCGAGAGGTATGGAAAGTGGGGTGGACCAAATAAAGGAGTGGCATAATGAAGAAAGAGAGAAAAGGGTGAAAAACCAGAGTGGTGAGTGAGTGTTGTACAAATTGGCGTGCAGTGTTAGATATCCACCAAATGCCCCAAAAGTTAGCGATTGATATAAATGGTAAAGAGTGGAGACGTAGCAAAGTGTTGTGTTAGGGGATGAGTGGAGTTGCAGAAACATTAAGACAGCCACAGCCTTGATGGGGAAAGGGGGAAAGAGAATCTGACACTACAAACATAAGTGGACCATCCTTCCCTTCCTTCACTTTATAACCCCACCCCTCATAAAAACTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTCATAATAATCCCTTTGTTTAGAGGTATTGTTTTGTCTCTGGGAGAATCCCATTCCAGGCAAGGGGCAGCCGAGTTAAGAGTCTAGTCAGAAAACCAGCTTGGGCTTTGTCACTAATCTAATCTAATCTCCTGCTGTCTTGCATATTTGAATACATTTATTAGGGATGTGGGGAGTGGTTTAGGGTTTCAGAAAGTGCCCAGAAAGGCAATTATTAGAAACAGGACCAAAGCTGCAGGCTGTGGGAGATGACTAACATGACCTTGTCGGTTGTTTTGCTGGAATAGTCCTCTTCTGCAGTCATCACTTTATTCTCCAAACCCCCACACCTGCGGCTTCCGATCTTGGGTTTGGGCGGGTGGTAGGAAACACCAAAAAAAAAAAAAAAAAAAACCCTCTCTTTACCTTCTTCCTACACACCATCTTTCTTTCTTCTTATACTCTCTTTCTTCTGATTGCATCCATCCCCCAGCAGCTTCCATATTCACTATTGTCGTTTTCCTGCTGCTCTTACTTACTGCATATTTCTTCATATTCCCCTCCCTCCCCAATTTTACAAAGGTAAGATTTTGATAGCAGACGCTGGTAGGTCCCTCTCTCTTTCTCTCTCTCTATGTATGAATTCAAATTCATAGATGTTGAAAATTTCTCCTCTTTTGTCTTTCCGTCCCCAGTAATCCATTTATTTCCTGTTACCCAACAGTTTGTAGCACTTACGATAACGGATTGGGAGTGATGGAGGACGCAAGAAAGCACCAGGAATTAGCAAAGGAATCTGGAGATTAA

mRNA sequence

ATGAGCAGGGACTGGGGGGGCGTGGTAAAAAACAAAGAAGACAGGCCTAGAGCGAGAGGTATGGAAAGTGGGGTGGACCAAATAAAGGAGTGGCATAATGAAGAAAGAGAGAAAAGGGTGAAAAACCAGAGTGTTTGTAGCACTTACGATAACGGATTGGGAGTGATGGAGGACGCAAGAAAGCACCAGGAATTAGCAAAGGAATCTGGAGATTAA

Coding sequence (CDS)

ATGAGCAGGGACTGGGGGGGCGTGGTAAAAAACAAAGAAGACAGGCCTAGAGCGAGAGGTATGGAAAGTGGGGTGGACCAAATAAAGGAGTGGCATAATGAAGAAAGAGAGAAAAGGGTGAAAAACCAGAGTGTTTGTAGCACTTACGATAACGGATTGGGAGTGATGGAGGACGCAAGAAAGCACCAGGAATTAGCAAAGGAATCTGGAGATTAA

Protein sequence

MSRDWGGVVKNKEDRPRARGMESGVDQIKEWHNEEREKRVKNQSVCSTYDNGLGVMEDARKHQELAKESGD

Homology

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BLAST of CmaCh07G004860 vs. NCBI nr
Match: KAG6594826.1 (hypothetical protein SDJN03_11379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.5 bits (184), Expect = 2.1e-10
Identity = 46/90 (51.11%), Postives = 49/90 (54.44%), Query Frame = 0


Query: 21 MESGVDQIKEWHNEEREKRVKNQS------------------------------------ 72
          MESGVDQIKE +NEERE+RVKNQS                                    
Sbjct: 1  MESGVDQIKERYNEERERRVKNQSAASIFTIVVFLLLLLTYCIFLHIPLPPQFNKGEILI 60

The following BLAST results are available for this feature:

BLAST of CmaCh07G004860 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G004860 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh07G004860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6594826.1	2.1e-10	51.11	hypothetical protein SDJN03_11379, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CmaCh07G004860 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G004860.1	CmaCh07G004860.1	mRNA