CmaCh07G002440 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G002440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-directed RNA polymerase subunit beta
Location	Cma_Chr07: 1102588 .. 1104665 (+)
RNA-Seq Expression	CmaCh07G002440
Synteny	CmaCh07G002440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGTGTACTATTTTGGGTATGGCACTAATCTGATATATATGTATATATTTAATTTATCAACATCTAATACTATAATAGTTCATTGTCATCATCATCGTTACTGCCTTGCTAAATTATTTTTATACTATTTTGTCCGTGACTTGTTAAATTGTCTTACTGGACATTACATGTACCAGTTATATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGACAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGTCCTTTACTTGGAGGCCTGTTTAAAATGGTTATTATTATTATTTGACAAGTTTGTTTTTTGGTTGCAAATATTATACTTTTCTCATTTTGAGAGTTTCTCATCATCTTTTATTTGTTTGAATCAGCTATTTAGAAAGTTAACAAGAGAAGGGATCGGTTACGTCCAAAGGGTCGCAATAAAAAAAAAACAGGATCTTATACAAGGATCAATCCAGGCGAGGCTTATTCTGACACCTACACTCACTGTGACATCCATTCATCATTGGTTTCGGGCGTTTATGCTTCAATTATTCCATTTCCTGACCATAATCAGGTTTGCTAGTTTTGCTATCTCTGACTGATTCAATTTTTTGTGTATTTAACCCCACGTAACACTTATCAATCTGCCATGGGTAAATAAGCTATAGGAATATATATCACCAACTAGTAATGTCAAATGGTATGCTCTACTTCAATTTCAAATAAAAGTTGTAGACGGTCTATATAAATAATCAAAGTTGGAAGCTTCAATAATTGGTATCTAAAAAGGTCTGGTTTGAAACTGGGTCAGCGAAATACGGGGAGTAGACGCCTTTCAGTGTGTGGGAGTGGTTCATCTATTGAAGGTAGACATCTCAAATTCAATATTCTTTAGTTTTCCTTTCTTGTCGGGCTGTTCACGTCTGTGACTTGTTAGGCTCATCTAAATTGCTTTAATTAGCTTTTGGATTACTCTCTTATCCAACATTAATGTACTAGATTATCAGCTGCTCTCTTGGTCTAATATCTACAATTTTGTCGGTGAAGTCCCGTTCATTTATGATTTCTTTATATATATATACACACACACACACACACACACATCAGAATTGTTTGCTTGTAAGTTAGTTTTATTGAATTTTATATTAAGTCTGTATGCAAATATTGGAGGATAAGATTAAACCCACATGGGGTGTCCCTTTTGCAATAACTACAAAAGACATTGCCTCCCTTCTCATATGGACAAAGGTCATTTGAATAAGAAGGGTGCAACAATCAAGATTCTTTTTTCTTTTTTTAATGTAATTATGACGATTGTATTTTTATAAGAATACTTCCCCATTAAAAAATATGTATTTATGGGTGTGAGGTTTTAGTTTTATCTTTTAACTTTTTCAATAGTTGATAGTATTACTTTCAATAAATTCTTATATTCGGAGAAATGATTTTTGGAAGTTTAATAAAATTTTGTTATTCAGAGATTTAGATTATCCTTTCATATTATTAATTAGTCTTAGAAGAAAATGGTAATGGAGATGTATTGCAGTCTTCTTTTGTTCATCAACCCTCACCTTATTTTTTTGCCGCTGAAGTAGCGGATCAGCCCCCTCTTCAACCAGTAGTTTTGTTCAGTATCTTCTGCAGATTGTCAGCTTGTTCAATTGACATTAGAGGATTCCAGTCACTAGGCACAACTTTCTTCCAGGACTATTCTAGAAGATAAGCAGTTGGTAGCAGTTGCTTCCCTTCTTCCATTGCTTGCTCAGATTTTGAATCTTTATCTCAGGTTCGTCGATCTTCTCCAGCTAGGACTACTCCAGATGATAAGCAGTCTGGAGCCGTTGCCTCCCTTATTCCAATTACTTACTCAGATTTTGAATCTTTATCTCAGGTTCGTCGATCTTCTCCAAGCTAGGACTACTTCAGATGGTAAGCAATCGGGAGCAGTTACTTCACTTATTCCAATTGCTTACTCAGATTTTGAATCTTTCTCTTCGTCGATCTTCTTGACATTTCTTATCTCATAG

mRNA sequence

ATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGTGTACTATTTTGGTTATATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGACAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGTCCTTTACTTGGAGGCCTGTTTAAAATGCTATTTAGAAAGTTAACAAGAGAAGGGATCGGTTACGTCCAAAGGGTCGCAATAAAAAAAAAACAGGATCTTATACAAGGATCAATCCAGGCGAGGCTTATTCTGACACCTACACTCACTGTGACATCCATTCATCATTGGTTTCGGGCGTTTATGCTTCAATTATTCCATTTCCTGACCATAATCAGGACTATTCTAGAAGATAAGCAGTTGGTAGCAGTTGCTTCCCTTCTTCCATTGCTTGCTCAGATTTTGAATCTTTATCTCAGGTTCGTCGATCTTCTCCAGCTAGGACTACTCCAGATGATAAGCAGTCTGGAGCCGTTGCCTCCCTTATTCCAATTACTTACTCAGATTTTGAATCTTTATCTCAGGTTCGTCGATCTTCTCCAAGCTAGGACTACTTCAGATGGTAAGCAATCGGGAGCAGTTACTTCACTTATTCCAATTGCTTACTCAGATTTTGAATCTTTCTCTTCGTCGATCTTCTTGACATTTCTTATCTCATAG

Coding sequence (CDS)

ATGCTTCCCCATGTTGGTGTAGGTGAATTTTGTGAGACTAAGGAGGTGTACTATTTTGGTTATATAATTCATCCGCTACTCTTATGTGCCCTTGGGCGGACAGCAGAAGATGATGGGAACCACTTTGGAAACAAAAGACTGGACTTTTCTGGTCCTTTACTTGGAGGCCTGTTTAAAATGCTATTTAGAAAGTTAACAAGAGAAGGGATCGGTTACGTCCAAAGGGTCGCAATAAAAAAAAAACAGGATCTTATACAAGGATCAATCCAGGCGAGGCTTATTCTGACACCTACACTCACTGTGACATCCATTCATCATTGGTTTCGGGCGTTTATGCTTCAATTATTCCATTTCCTGACCATAATCAGGACTATTCTAGAAGATAAGCAGTTGGTAGCAGTTGCTTCCCTTCTTCCATTGCTTGCTCAGATTTTGAATCTTTATCTCAGGTTCGTCGATCTTCTCCAGCTAGGACTACTCCAGATGATAAGCAGTCTGGAGCCGTTGCCTCCCTTATTCCAATTACTTACTCAGATTTTGAATCTTTATCTCAGGTTCGTCGATCTTCTCCAAGCTAGGACTACTTCAGATGGTAAGCAATCGGGAGCAGTTACTTCACTTATTCCAATTGCTTACTCAGATTTTGAATCTTTCTCTTCGTCGATCTTCTTGACATTTCTTATCTCATAG

Protein sequence

MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKMLFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHWFRAFMLQLFHFLTIIRTILEDKQLVAVASLLPLLAQILNLYLRFVDLLQLGLLQMISSLEPLPPLFQLLTQILNLYLRFVDLLQARTTSDGKQSGAVTSLIPIAYSDFESFSSSIFLTFLIS

Homology

[Close]

BLAST of CmaCh07G002440 vs. ExPASy Swiss-Prot
Match: Q42877 (DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum OX=4081 GN=RPB2 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.4e-31
Identity = 73/138 (52.90%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGE+CETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K   +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. ExPASy Swiss-Prot
Match: P38420 (DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB2 PE=1 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 6.1e-30
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVG+GE CETK+ YYFGYIIH LLLCALGR  EDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 352 MLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+   YVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 412 LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 472 QVLNRLTYASTLSHLRRL 489

[Close]

BLAST of CmaCh07G002440 vs. ExPASy Swiss-Prot
Match: Q54J75 (DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum OX=44689 GN=polr2b PE=3 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.4e-21
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHV V EF ETK+ +YFGYI H LLL +L R   DD +HF NKRLD +GPLLG LF+ 
Sbjct: 345 MLPHVSVAEFYETKKAFYFGYITHRLLLASLERRPLDDRDHFANKRLDLAGPLLGTLFRQ 404

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLI 95
           LF+KLT++   Y+QR   K K+ +   +++++ I
Sbjct: 405 LFKKLTKDVRLYLQRCIDKDKEFIASSAVKSKTI 438

[Close]

BLAST of CmaCh07G002440 vs. ExPASy Swiss-Prot
Match: P30876 (DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-21
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGV +FCETK+ Y+ GY++H LLL ALGR   DD +H+GNKRLD +GPLL  LF+ 
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLI 95
           +F+ L +E   Y Q+   + K   ++ +I+ R+I
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440

[Close]

BLAST of CmaCh07G002440 vs. ExPASy Swiss-Prot
Match: Q8CFI7 (DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b PE=1 SV=2)

HSP 1 Score: 102.8 bits (255), Expect = 5.2e-21
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGV +FCETK+ Y+ GY++H LLL ALGR   DD +H+GNKRLD +GPLL  LF+ 
Sbjct: 347 MLPHVGVSDFCETKKAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRG 406

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLI 95
           +F+ L +E   Y Q+   + K   ++ +I+ R+I
Sbjct: 407 MFKNLLKEVRIYAQKFIDRGKDFNLELAIKTRII 440

[Close]

BLAST of CmaCh07G002440 vs. ExPASy TrEMBL
Match: A0A5N6QB74 (DNA-directed RNA polymerase subunit beta OS=Carpinus fangiana OX=176857 GN=FH972_000445 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.4e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 353 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 412

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 413 LFRKLTRDVRGYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 472

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 473 QVLNRLTYASTLSHLRRL 490

[Close]

BLAST of CmaCh07G002440 vs. ExPASy TrEMBL
Match: M5X2K1 (DNA-directed RNA polymerase subunit beta OS=Prunus persica OX=3760 GN=PRUPE_4G046700 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. ExPASy TrEMBL
Match: A0A6J5UK26 (DNA-directed RNA polymerase subunit beta OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS25091 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. ExPASy TrEMBL
Match: A0A314U9W3 (DNA-directed RNA polymerase subunit beta OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_12832 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. ExPASy TrEMBL
Match: A0A5E4F969 (DNA-directed RNA polymerase subunit beta OS=Prunus dulcis OX=3755 GN=ALMOND_2B020014 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. NCBI nr
Match: KAE7995674.1 (hypothetical protein FH972_000445 [Carpinus fangiana])

HSP 1 Score: 139.8 bits (351), Expect = 2.9e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 353 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 412

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 413 LFRKLTRDVRGYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 472

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 473 QVLNRLTYASTLSHLRRL 490

[Close]

BLAST of CmaCh07G002440 vs. NCBI nr
Match: XP_007214559.1 (DNA-directed RNA polymerase II subunit RPB2 [Prunus persica] >XP_021825796.1 DNA-directed RNA polymerase II subunit RPB2 [Prunus avium] >XP_034211427.1 DNA-directed RNA polymerase II subunit RPB2 isoform X2 [Prunus dulcis] >CAB4276087.1 unnamed protein product [Prunus armeniaca] >ONI10423.1 hypothetical protein PRUPE_4G046700 [Prunus persica] >CAB4306473.1 unnamed protein product [Prunus armeniaca] >VVA24467.1 PREDICTED: DNA-directed RNA polymerase [Prunus dulcis])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. NCBI nr
Match: XP_008225092.1 (PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Prunus mume])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. NCBI nr
Match: XP_034211426.1 (DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Prunus dulcis])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. NCBI nr
Match: PQM34133.1 (DNA-directed RNA polymerase II subunit RPB2 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-29
Identity = 74/138 (53.62%), Postives = 95/138 (68.84%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVGVGEFCETK+ YYFGYIIH LLLCALGR AEDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 351 MLPHVGVGEFCETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRM 410

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+  GYVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 411 LFRKLTRDVRGYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 470

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 471 QVLNRLTYASTLSHLRRL 488

[Close]

BLAST of CmaCh07G002440 vs. TAIR 10
Match: AT4G21710.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 132.5 bits (332), Expect = 4.3e-31
Identity = 70/138 (50.72%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 1   MLPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKM 60
           MLPHVG+GE CETK+ YYFGYIIH LLLCALGR  EDD +H+GNKRLD +GPLLGGLF+M
Sbjct: 352 MLPHVGIGEHCETKKAYYFGYIIHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRM 411

Query: 61  LFRKLTREGIGYVQRVAIKKKQDLIQGSIQARLILTPTLTVTSIHHW-------FRAFML 120
           LFRKLTR+   YVQ+     K+  +Q +I+A+ I +      +  +W        RA + 
Sbjct: 412 LFRKLTRDVRSYVQKCVDNGKEVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVS 471

Query: 121 QLFHFLTIIRTILEDKQL 132
           Q+ + LT   T+   ++L
Sbjct: 472 QVLNRLTYASTLSHLRRL 489

[Close]

BLAST of CmaCh07G002440 vs. TAIR 10
Match: AT5G45140.1 (nuclear RNA polymerase C2 )

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-07
Identity = 26/78 (33.33%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 2   LPHVGVGEFCETKEVYYFGYIIHPLLLCALGRTAEDDGNHFGNKRLDFSGPLLGGLFKML 61
           L HV V +    ++ +Y G ++  ++   L + A DD ++ GNKRL+ SG L+  LF+ L
Sbjct: 324 LAHVPVPDNNFRQKCFYVGVMLRRMIEAMLNKDAMDDKDYVGNKRLELSGQLISLLFEDL 383

Query: 62  FRKLTREGIGYVQRVAIK 80
           F+ +  E I  V  +  K
Sbjct: 384 FKTMLSEAIKNVDHILNK 401

The following BLAST results are available for this feature:

BLAST of CmaCh07G002440 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q42877	1.4e-31	52.90	DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum OX=4081 GN=R...	[more]
P38420	6.1e-30	50.72	DNA-directed RNA polymerase II subunit 2 OS=Arabidopsis thaliana OX=3702 GN=NRPB...	[more]
Q54J75	1.4e-21	52.13	DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum OX=44689...	[more]
P30876	5.2e-21	50.00	DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens OX=9606 GN=POLR2B PE...	[more]
Q8CFI7	5.2e-21	50.00	DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus OX=10090 GN=Polr2b P...	[more]

BLAST of CmaCh07G002440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6QB74	1.4e-29	53.62	DNA-directed RNA polymerase subunit beta OS=Carpinus fangiana OX=176857 GN=FH972...	[more]
M5X2K1	1.8e-29	53.62	DNA-directed RNA polymerase subunit beta OS=Prunus persica OX=3760 GN=PRUPE_4G04...	[more]
A0A6J5UK26	1.8e-29	53.62	DNA-directed RNA polymerase subunit beta OS=Prunus armeniaca OX=36596 GN=CURHAP_...	[more]
A0A314U9W3	1.8e-29	53.62	DNA-directed RNA polymerase subunit beta OS=Prunus yedoensis var. nudiflora OX=2...	[more]
A0A5E4F969	1.8e-29	53.62	DNA-directed RNA polymerase subunit beta OS=Prunus dulcis OX=3755 GN=ALMOND_2B02...	[more]

BLAST of CmaCh07G002440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE7995674.1	2.9e-29	53.62	hypothetical protein FH972_000445 [Carpinus fangiana]	[more]
XP_007214559.1	3.8e-29	53.62	DNA-directed RNA polymerase II subunit RPB2 [Prunus persica] >XP_021825796.1 DNA...	[more]
XP_008225092.1	3.8e-29	53.62	PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Prunus mume]	[more]
XP_034211426.1	3.8e-29	53.62	DNA-directed RNA polymerase II subunit RPB2 isoform X1 [Prunus dulcis]	[more]
PQM34133.1	3.8e-29	53.62	DNA-directed RNA polymerase II subunit RPB2 [Prunus yedoensis var. nudiflora]	[more]

BLAST of CmaCh07G002440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21710.1	4.3e-31	50.72	DNA-directed RNA polymerase family protein	[more]
AT5G45140.1	9.7e-07	33.33	nuclear RNA polymerase C2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.1100.10		coord: 12..166 e-value: 8.3E-8 score: 33.5
None	No IPR available	PANTHER	PTHR20856:SF23	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA	coord: 1..96
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 1..95
IPR007642	RNA polymerase Rpb2, domain 2	PFAM	PF04561	RNA_pol_Rpb2_2	coord: 2..48 e-value: 1.1E-10 score: 41.5
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 1..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G002440.1	CmaCh07G002440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding