CmaCh07G001340 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh07G001340
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	DNA-binding protein DDB_G0278111-like
Location	Cma_Chr07: 692375 .. 695736 (-)
RNA-Seq Expression	CmaCh07G001340
Synteny	CmaCh07G001340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGATAGAGTTGCGATACGATCGACAGGCAAAAAGTGGGTCGCGTCTCATAAACGCAACCAAGGAAATCCGCAGCTTCCTTTTCGCCTCTGCAGGCTGCACCTTATAGGAAAATCTTGAACTGTTCTTCTACTGACTGCTAGTGCTAGCTCGATCTTCGAAACAATGGTAATTTCGCCTATGTCGATTTCTTGCTTTCGATTCGTTTCTAGTGTGTGAGGAAATCCTGTAGTTTGCGATGTAATCAAACGCTGCTTCAAACTCAATTTACCTTTTCTTGTAATGATGTTTACTCTTCATTCAATCTGAGTTTCTTCGTTCTGCTTCGGCAATATTTCTCCTTTACCGAATCAGGGGTTTGGCTTTTTTTATCTAACGGCGTTTTCTTGCGTTTTCCCCATAAATTTTATGTTCATGTATATGAATTCTTCCAGATTCGGATTACAGTTGGATGACTTAGAGCCCTATGTTAAACTGCAAACTATTCATTTGATCATTTATGTTCAAATAGATAGATGTAAAGGGCTATTTATTTTATGTATGAGCGGCAACTTGACTTGTTGGCGTTTTTAATCCAAAGTTTTTATTTTGAAGCATCAATAGGTTATTGATTATCATTGGCCTTTTTTCGCAATACTCATTGGTATAATTATTAATATCGTTTATCACTCTCTTTCTATGTCACATTGTCAATGTTTGGCTCAAATCCCTCGTAGAGGACTAATAAATTTCTATAATTTACTACTATACCAAGTGATTTCAATCTTATAAGTTTGATTGCTTAGCTTGGCAAGACAAGCTTAGCTACTAATTCTATCAAAGTAGCAAGTGCCCATGATTTTCAACTATACTTGACGACAGATAAACTCTATCTTTCCTTCTCGTGGCATTTTATTTATTTATTTATTTATTATTTTTTATCTCTGTTGTGGTTGTAAATGGAATTCTCACCTTTGACCCTCATATAGGATGATCCTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGTAAGCTGTAATCTCTTTGTTTATATGCGTGGGAACATTTTAGCTGTAATCTCTTTGTTTATATGCGTGGGAACATTTTACTTGATCGTGGACATCTCTACTGACTTCTAATGATAATTAGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGAGGCTAAGAGGTTCTTGATTTTATTTTATTATTTTGTAGTTGTTTTTTAGTCATCACTTTTAGTATCCAAGTCCCGCTTTAGCATATGACAACAATTTCTTTCACATTCAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACGTAAGTTTAACCTTAGCATGCATTGTAGATAGTATCTTTACCCTTAAAAAAACTCTACTTCTTTTCCTCATCCACGATCCATCAACCCCAAATTGATTCCCCCACCCTGAAAGAAAGAGGGAAAAAAGATTCTTAATTGGAAAATGTCGTTGGTTCAGTTTAAGGATGATTCTGGTTGCATACCTTCAATTTTGAGGCTGAACTGACTCAGACATTCGTCATTATGGGGCCAACTTCTTGATTAGAGTTTATATGATGGTTGTATTTCTCTCCGTGGTTCCTGGATATTCTCGTTTACATGGATATCTTGTAGTAAGATCATTTGCGATGCATGCTACAATTCTGGACCCATGGTTGCAAAAAAAGAAAAAAGAAAAAAAAAAGAGTTTCAAATGGTTTTCATGCTTCATTGAATGAAATGGATACATTTTGCTCATTTTGATTCACAATTCTTTTGCATTTTATTATTTCTCAATATGAGTTGAATTCCTTAATTGTAAATGTTAGATTTGGGGTTTTGGCATTGATGATACCCTTGGCAATAGTCATTCAGCATTATTATCGGATAAGATTGCTAAACTAAGAGTATAAAGATTTGGATGGAGTATGGGTTTTCCTTTTTGTTGATTGTCGATGTTACTAGATCTACTTTTACTCCAGCCTTATTTTCGGGCAATTAGATGGCATTCCTGTCAAACTGTGCTTTGCTATTAGCTGGCATGGAGGTCGTACGGGCAAATTATGCCTAGTTAGTCATTGTTGCATTTTGGTTACTGGCTATTTTACCGTATTCATATTCATTTTTCCCTGTTCTTTTATGCAGTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTAGAGGTGTCGAAGATGTTATACTGAGAGCTGCCCAGATGGGCCAGATTGTAGAGAAGGTGTGTGCAGTAGCATATCGTTCCAGTTTCTTTGTCAAAATTGATGCACCTATATTTACTTCGGAATATGACAAACTCCAGTATGAATGAAACGACGGATTTTACCATCTCTTTTCAGGTGTCTGAAGAGAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTGTGAGTTTTCATTGCTTACATTATGGGTGCCTGCTGAATTTTTATATGTTCTTGGCCTGACACTTTTTGTATAATGCCCATAATTCTTTAGATACAAAGGCGTCGAAGTGTTCTTGAGGACGACGATTAGCAAGTGATATGAATTGCTCACCTTATATAACATATGCTTATGCCAGCAGTTTTGTTGTATGTTTATCGCTTGCACTATACAATATCTACCTGTTTATCCATTTTCTCTGCTGCTACTTTATCATGATCACCCCATAATCTCACCTCAGAATGCAAGAACTCCTCGGAGTTGGCTGGTATTACATCATTGTTGCGGTCAAATTCTCCAAACCATTAAGCTGTATGTCAGAGTATCGACCTTGAACTATTATTATGCTTTCTAATTTCTGATTGTTAAGAGGAATTGATTTCCCTTCAATTCTGGGTGTATTTTAATCTAGAGATTGATCTGTGCCTGTCTAATGCTATCCATACAAATTTGGAATCATTGAATATAGGTATTGATATGGTTGATTTGGATTGCTGTACTACTTCAATGATGAAAGTGCATTTAATAACCATCATCTATTTCAATATGAATGCGGAAGTTAGTAAGTACAGGTCCATATAACGAAGGAAAATGGGAAAGATCCGTACTTTCCTCGCAGGAAACACAGATGCAACCTGTGGCTTAGGCCCATCATTTGAGTGAGAGCATTTTCTCTCGTCTCTTTGTTATCAGTTTCTCTTTATAATATTGGCTGTTGATTTGTGATGTGTGCTGTGATAATACCAAGTCGTCACATCCATCCGTTTATGATTGTGATGATGAAACTTTTATTTGTAAGCATGGATATGGATCTCTGTAGATAAAGGATAAGGTGTTGAAAAGATTCCTC

mRNA sequence

AAGATAGAGTTGCGATACGATCGACAGGCAAAAAGTGGGTCGCGTCTCATAAACGCAACCAAGGAAATCCGCAGCTTCCTTTTCGCCTCTGCAGGCTGCACCTTATAGGAAAATCTTGAACTGTTCTTCTACTGACTGCTAGTGCTAGCTCGATCTTCGAAACAATGGATGATCCTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGAGGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTAGAGGTGTCGAAGATGTTATACTGAGAGCTGCCCAGATGGGCCAGATTGTAGAGAAGGTGTCTGAAGAGAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGTGTTCTTGAGGACGACGATTAGCAAGTGATATGAATTGCTCACCTTATATAACATATGCTTATGCCAGCAGTTTTGTTGTATGTTTATCGCTTGCACTATACAATATCTACCTGTTTATCCATTTTCTCTGCTGCTACTTTATCATGATCACCCCATAATCTCACCTCAGAATGCAAGAACTCCTCGGAGTTGGCTGGTATTACATCATTGTTGCGGTCAAATTCTCCAAACCATTAAGCTGTATGTCAGAGTATCGACCTTGAACTATTATTATGCTTTCTAATTTCTGATTGTTAAGAGGAATTGATTTCCCTTCAATTCTGGGTGTATTTTAATCTAGAGATTGATCTGTGCCTGTCTAATGCTATCCATACAAATTTGGAATCATTGAATATAGGTATTGATATGGTTGATTTGGATTGCTGTACTACTTCAATGATGAAAGTGCATTTAATAACCATCATCTATTTCAATATGAATGCGGAAGTTAGTAAGTACAGGTCCATATAACGAAGGAAAATGGGAAAGATCCGTACTTTCCTCGCAGGAAACACAGATGCAACCTGTGGCTTAGGCCCATCATTTGAGTGAGAGCATTTTCTCTCGTCTCTTTGTTATCAGTTTCTCTTTATAATATTGGCTGTTGATTTGTGATGTGTGCTGTGATAATACCAAGTCGTCACATCCATCCGTTTATGATTGTGATGATGAAACTTTTATTTGTAAGCATGGATATGGATCTCTGTAGATAAAGGATAAGGTGTTGAAAAGATTCCTC

Coding sequence (CDS)

ATGGATGATCCTGAACTAGAAGCAATCAGGCAGAGAAGAATGCAGGAACTCATGGCCCAGCGTGGCATGGGAAGCCAAAGTAATCCAGAGCAACAGAAGGCCCAGGAAGAGGCTAAGAGTGAAGCAGAGGAACGCAGACAAATGATGCTCAGCCAGATTCTGTCAATGCAAGCGAGGGAAAGACTTGCTCGAATTGCGTTGGTTAAACCTGAGAAGGCTAGAGGTGTCGAAGATGTTATACTGAGAGCTGCCCAGATGGGCCAGATTGTAGAGAAGGTGTCTGAAGAGAAGCTTATAACATTGCTTGAACAGATCAACAACCAGACCACAAAACAGACGAAAGTCACTATACAAAGGCGTCGAAGTGTTCTTGAGGACGACGATTAG

Protein sequence

MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD

Homology

[Close]

BLAST of CmaCh07G001340 vs. ExPASy Swiss-Prot
Match: Q54YS0 (DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G0278111 PE=3 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 8.7e-18
Identity = 59/118 (50.00%), Postives = 88/118 (74.58%), Query Frame = 0


Query: 11  QRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARERLARIALVKP 70
           ++ +Q+ ++Q   G   +PE Q+ QE  + EA ERRQ +L QIL+  ARERL+RI +VKP
Sbjct: 4   EKEIQQQLSQM-QGQGFDPEAQQRQEAQRQEANERRQGILIQILTPDARERLSRITIVKP 63

Query: 71  EKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRRRSVLEDDD 129
           EK+R +ED+I+RAAQ GQ+ E+V + KLI+LLEQ+ ++ TK+T +T++RR   +EDDD
Sbjct: 64  EKSRQIEDLIIRAAQTGQLTERVDDAKLISLLEQL-SEKTKKTTITMKRR--TIEDDD 117

[Close]

BLAST of CmaCh07G001340 vs. ExPASy Swiss-Prot
Match: O14737 (Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHGDPGDA------AQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CmaCh07G001340 vs. ExPASy Swiss-Prot
Match: P56812 (Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRKQRLAELQAKHGDPGDA------AQQEAKQREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CmaCh07G001340 vs. ExPASy Swiss-Prot
Match: Q5RBT0 (Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 85.5 bits (210), Expect = 4.8e-16
Identity = 55/128 (42.97%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M D ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MADEELEALRRQRLAELQAKHGDPGDA------AQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+ EKVSE+ LI +L++++ QT K T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSEKVSEQGLIEILKKVSQQTEKTTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CmaCh07G001340 vs. ExPASy Swiss-Prot
Match: Q2HJH9 (Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-15
Identity = 54/128 (42.19%), Postives = 83/128 (64.84%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M + ELEA+R++R+ EL A+ G    +      AQ+EAK    E R  +L+Q+L   AR 
Sbjct: 1   MAEQELEALRKQRLAELQAKHGDPGDA------AQQEAKHREAEMRNSILAQVLDQSARA 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RL+ +ALVKPEK + VE+ +++ A+ GQ+  KVSE+ LI +LE+++ QT K+T V   RR
Sbjct: 61  RLSNLALVKPEKTKAVENYLIQMARYGQLSGKVSEQGLIEILEKVSQQTEKKTTVKFNRR 120

Query: 121 RSVLEDDD 129
           + +  D+D
Sbjct: 121 KVMDSDED 122

[Close]

BLAST of CmaCh07G001340 vs. ExPASy TrEMBL
Match: A0A6J1KTQ8 (DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC111497139 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CmaCh07G001340 vs. ExPASy TrEMBL
Match: A0A6J1EFZ2 (DNA-binding protein DDB_G0278111-like OS=Cucurbita moschata OX=3662 GN=LOC111433829 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.2e-54
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CmaCh07G001340 vs. ExPASy TrEMBL
Match: A0A6J1IVC3 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111478726 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.9e-53
Identity = 124/128 (96.88%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVL+DDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of CmaCh07G001340 vs. ExPASy TrEMBL
Match: A0A6J1EC84 (DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111432996 PE=3 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.9e-53
Identity = 124/128 (96.88%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVL+DDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of CmaCh07G001340 vs. ExPASy TrEMBL
Match: A0A1S3AZB0 (DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 123/128 (96.09%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           M+DPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MNDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RL+RIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLSRIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CmaCh07G001340 vs. NCBI nr
Match: XP_022926831.1 (DNA-binding protein DDB_G0278111-like [Cucurbita moschata] >XP_023003579.1 DNA-binding protein DDB_G0278111-like [Cucurbita maxima] >KAG7026483.1 Programmed cell death protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 222.2 bits (565), Expect = 2.5e-54
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CmaCh07G001340 vs. NCBI nr
Match: XP_023518943.1 (DNA-binding protein DDB_G0278111-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.9 bits (564), Expect = 3.3e-54
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RS+LEDDD
Sbjct: 121 RSILEDDD 128

[Close]

BLAST of CmaCh07G001340 vs. NCBI nr
Match: XP_038881892.1 (DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding protein DDB_G0278111 [Benincasa hispida])

HSP 1 Score: 218.8 bits (556), Expect = 2.8e-53
Identity = 125/128 (97.66%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRGMGSQ+NPEQQKAQEEA+SEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGMGSQNNPEQQKAQEEARSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVLEDDD
Sbjct: 121 RSVLEDDD 128

[Close]

BLAST of CmaCh07G001340 vs. NCBI nr
Match: XP_022925642.1 (DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978919.1 DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita maxima] >KAG6581408.1 Programmed cell death protein 5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034694.1 Programmed cell death protein 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.2 bits (552), Expect = 8.0e-53
Identity = 124/128 (96.88%), Postives = 128/128 (100.00%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG+GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGVGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVL+DDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of CmaCh07G001340 vs. NCBI nr
Match: XP_023543163.1 (DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.7 bits (548), Expect = 2.3e-52
Identity = 124/128 (96.88%), Postives = 127/128 (99.22%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGMGSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60
           MDDPELEAIRQRRMQELMAQRG GSQ+NPEQQKAQEEAKSEAEERRQMMLSQILSMQARE
Sbjct: 1   MDDPELEAIRQRRMQELMAQRGGGSQNNPEQQKAQEEAKSEAEERRQMMLSQILSMQARE 60

Query: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTIQRR 120
           RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQINNQTTKQTKVTIQRR
Sbjct: 61  RLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINNQTTKQTKVTIQRR 120

Query: 121 RSVLEDDD 129
           RSVL+DDD
Sbjct: 121 RSVLDDDD 128

[Close]

BLAST of CmaCh07G001340 vs. TAIR 10
Match: AT1G29850.1 (double-stranded DNA-binding family protein )

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-46
Identity = 109/131 (83.21%), Postives = 119/131 (90.84%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTI 120
           ARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQIN+QTTKQTKVT 
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTY 120

Query: 121 QRRRSVLEDDD 129
           QRRR V  DDD
Sbjct: 121 QRRRGV--DDD 129

[Close]

BLAST of CmaCh07G001340 vs. TAIR 10
Match: AT1G29850.2 (double-stranded DNA-binding family protein )

HSP 1 Score: 181.8 bits (460), Expect = 3.5e-46
Identity = 109/132 (82.58%), Postives = 119/132 (90.15%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGM----GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSM 60
           M DPELEAIRQRRMQELMA++GM    G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS 
Sbjct: 1   MADPELEAIRQRRMQELMARQGMQGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSS 60

Query: 61  QARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVT 120
           QARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQIN+QTTKQTKVT
Sbjct: 61  QARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVT 120

Query: 121 IQRRRSVLEDDD 129
            QRRR V  DDD
Sbjct: 121 YQRRRGV--DDD 130

[Close]

BLAST of CmaCh07G001340 vs. TAIR 10
Match: AT1G29850.3 (double-stranded DNA-binding family protein )

HSP 1 Score: 174.1 bits (440), Expect = 7.2e-44
Identity = 102/126 (80.95%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 1   MDDPELEAIRQRRMQELMAQRGM---GSQSNPEQQKAQEEAKSEAEERRQMMLSQILSMQ 60
           M DPELEAIRQRRMQELMA++GM   G+Q NPEQ+K QE+AK EA+ERRQMMLSQ+LS Q
Sbjct: 1   MADPELEAIRQRRMQELMARQGMGKQGNQQNPEQEKQQEDAKREADERRQMMLSQVLSSQ 60

Query: 61  ARERLARIALVKPEKARGVEDVILRAAQMGQIVEKVSEEKLITLLEQINNQTTKQTKVTI 120
           ARER+ARIALVKPEKARGVEDVILRAAQMGQIVEKVSEE+LITLLEQIN+QTTKQTKVT+
Sbjct: 61  ARERIARIALVKPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTKQTKVTV 120

Query: 121 QRRRSV 124
               +V
Sbjct: 121 STNGAV 126

The following BLAST results are available for this feature:

BLAST of CmaCh07G001340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54YS0	8.7e-18	50.00	DNA-binding protein DDB_G0278111 OS=Dictyostelium discoideum OX=44689 GN=DDB_G02...	[more]
O14737	4.8e-16	42.97	Programmed cell death protein 5 OS=Homo sapiens OX=9606 GN=PDCD5 PE=1 SV=3	[more]
P56812	4.8e-16	42.97	Programmed cell death protein 5 OS=Mus musculus OX=10090 GN=Pdcd5 PE=1 SV=3	[more]
Q5RBT0	4.8e-16	42.97	Programmed cell death protein 5 OS=Pongo abelii OX=9601 GN=PDCD5 PE=2 SV=3	[more]
Q2HJH9	1.8e-15	42.19	Programmed cell death protein 5 OS=Bos taurus OX=9913 GN=PDCD5 PE=2 SV=3	[more]

BLAST of CmaCh07G001340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KTQ8	1.2e-54	100.00	DNA-binding protein DDB_G0278111-like OS=Cucurbita maxima OX=3661 GN=LOC11149713...	[more]
A0A6J1EFZ2	1.2e-54	100.00	DNA-binding protein DDB_G0278111-like OS=Cucurbita moschata OX=3662 GN=LOC111433...	[more]
A0A6J1IVC3	3.9e-53	96.88	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EC84	3.9e-53	96.88	DNA-binding protein DDB_G0278111-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A1S3AZB0	1.1e-52	96.09	DNA-binding protein DDB_G0278111 OS=Cucumis melo OX=3656 GN=LOC103484392 PE=3 SV...	[more]

BLAST of CmaCh07G001340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022926831.1	2.5e-54	100.00	DNA-binding protein DDB_G0278111-like [Cucurbita moschata] >XP_023003579.1 DNA-b...	[more]
XP_023518943.1	3.3e-54	99.22	DNA-binding protein DDB_G0278111-like [Cucurbita pepo subsp. pepo]	[more]
XP_038881892.1	2.8e-53	97.66	DNA-binding protein DDB_G0278111 [Benincasa hispida] >XP_038881893.1 DNA-binding...	[more]
XP_022925642.1	8.0e-53	96.88	DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita moschata] >XP_022978...	[more]
XP_023543163.1	2.3e-52	96.88	DNA-binding protein DDB_G0278111-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CmaCh07G001340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29850.1	2.7e-46	83.21	double-stranded DNA-binding family protein	[more]
AT1G29850.2	3.5e-46	82.58	double-stranded DNA-binding family protein	[more]
AT1G29850.3	7.2e-44	80.95	double-stranded DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036883	PDCD5-like superfamily	GENE3D	1.10.8.140		coord: 2..110 e-value: 1.4E-34 score: 120.3
IPR036883	PDCD5-like superfamily	SUPERFAMILY	46950	Double-stranded DNA-binding domain	coord: 9..117
IPR002836	PDCD5-like	PFAM	PF01984	dsDNA_bind	coord: 9..120 e-value: 1.3E-31 score: 109.1
IPR002836	PDCD5-like	PIRSF	PIRSF015730	TFAR19	coord: 1..128 e-value: 8.4E-38 score: 127.3
IPR002836	PDCD5-like	PANTHER	PTHR10840	PROGRAMMED CELL DEATH PROTEIN 5	coord: 1..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	PANTHER	PTHR10840:SF3	BNAA07G07610D PROTEIN	coord: 1..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh07G001340.1	CmaCh07G001340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding