CmaCh06G017440 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G017440
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	HNHc domain-containing protein
Location	Cma_Chr06: 10655430 .. 10658519 (-)
RNA-Seq Expression	CmaCh06G017440
Synteny	CmaCh06G017440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAAATTTAAAGGTCCTTTCCACAAAAAATGGGCGATCATTAGTGGATAAGATTACGATTGATCATCGACCAAACTATATTGTAAGAATTAAATTTTTTTACTTTAAAATTATTATGTGAAAATACTGTCTAATTAATTTGTTTTGTTGATAAAGTTGTTTTTTTTATTATTAAAACAATTTTTGGAAGCAGAAGATATGAAGTGAAATGTGCGGGAAAAATATGTGGTGATGGGCTTTTCCGTGCGCATGTAATGCTCTCTTTTCTTCTTCCCTTCAACTTTTGGGGTTTGATTTCTTCATCTCATGAGCAGTCGCGATTTTGATCTCCATTGACTGCTCGCAGGAACCCTATCTAAGTGCTCAAATGGCCCAATTCACCGCACATAGTCGGGTTAAGTTGTTGCTCAACGGAGACGGAGTGCCATTCGGTTCAGAACCAAAAGATCGTTCGCGACACAAGCTCAGATCAGTACGAACCCTTAAGCGAAGAACTCCTTTATCCGGTGCCTCCTCCACTGGACTTTCCCCTTCGTCGTCCTCGGCTTCAGCTTTGAGGAAATCCGCTCAGCGTGTTGGTGTGAGGGGTGAGAGCGTTAGCGGAGACGACGCCATTCTTGATATTGACTATGATTACGAGTTTGAGAGTGACGATCTGGCTTGCTTCAGAGGTCTCGTCTTGGATATTTCCTACAGGTAATGTTATTCCACTGAGATTATTGGAAAGCTGTTTGAATATTAATAGTGGCATAATCGGGAGTTAGTTAATTGTGGATGGCTATAAATAGGGGGAGTTCGGAGTTTAAGAATTAAGCATAATTTTTAGGAATTGGTGTACTGTAGATCTTAGGAAAGAGATAGCCATCACCTTTTGATATGTCCTGTATGCGGTACCATGCACTGAATAAAACGAACAAACACAAATAAACTTGACTCCATTTCTGTATGTGGAATGGAGTGACCTCCACTTTTTTGTGTATACTCGTTTCATGTTGCTTTGATATCTCCATATTGTTTGTATGACTGGAAAGGTTGTAATTTATCTTTTGCTGTTGATTTCCTTGCTTTAGGCCAGTTAACGTTGTTTGTTGGAAGCGTGCAATTTGTTTGGAGTTCATGGAGAAGGTTTGACCAATCTCTTTTACATATTATTTTCCATTGGTTTTCGTCATGAATAGGAAAATATGTCCAACTTCCGAGAGCGAAAAACAAAATGGGAATTGCTAAATGCTTTGATATTTAAATCCAAAGGGAATAAGGAAACTGTCAGTTCCACAAAAGATGATCACGATCCTTTTCTTGCTGACGATAAAATGACACAGAACTAAAGAAAAAATGGCAATGAATACGATGTTGGGTGTCCACGCTATCATGTAAAACTATTTGCAGAAAGTCTGTGAATTTAAAATCTTGATTATGGATTTCAAAAGGCTTAGATAAGGGTTTGGTTCTATCAATTGATTGAGGTCGATCGAGTAGTTTTGAATCCACTGTAAATGTTAACAATGCATGTTTCGGTATGTCTTTATCTCGAACCTTATTCGCTTTTCCAGGCTGATGTATTGGAATACTATGACCAAACTGTGAGTTCTCCAAGTGGATCCTTCTATATACCAGCAGTCTTAAGGGTATGCATCAAACATGTATCTGGTTCATTCATGGACTTTTTTTCACTGGATTCTACTTATTTCAATCTTTACTTCCATAACCAGGAGAAGCTCAACACTGAACTCATCTTTTTTTACTTGTCTTGTATTTTTCTAAGGCCTTTGAAGTAAGTTACTATACCATCTCCCCTGTCAGGTTCCTCATTTATTGCAAGTTGTAAAGAGAAGAAGAATCAAGCAGTCTTTGAGTCGTAAAAACATCCTTTATCGGGACAATTACACTTGTCAGTAAGTTACTCAATTTATCATTTAAATTTGAAATGGAAGAAGTTACTTTGAGATGCTTTGCTAATTTTATGATTCGATTACATAATCATTTTAATTGTAGTTTCATCAAAAACCTGAATAGCCTCTGAATTTCATGTGAGCTTGTCCCTTTAGTGGGTTTAGGTCTTTTTAAATTCTCAACACTACTTTCAATAGGAAGGCTTAACTAGACTATTAATATTGAAATGAGGAAGATATTTGCTATGAATTCTTTTCAGTTCTTGTTATTTTGTGGCAAAGGGTGAATATTAATTTCAACCAATGCTATCTTTGTATGCTGTCTCATTTTTCTTTATTTTTTCGTTGCCTTAAATGGGCCTCTTCTACAGGTATTGTTCATCACATGAGAGTTTGACGATTGACCATGTTTTGCCCGTGTCCCGGGGTGGAGAATGGACATGGGAAAATCTGGTGAGTTATCTATCCGGTAGATATTAATATAAGATTACAAATGCTCAACTGAATTTTCAATCATCGAAAGACTGAAGACGTCTTTGTTGAATCTTCACACCTGATCCAGGCTGACCCCTGTCCTCTCATGTTATAACAGGTGGCCGCCTGCGTGAAATGCAATTCAAAGAAAGGGCAAAAAACTGTTGAAGAAGCAAATATGAAGCTGAAAAAGACTCCCAAGGTAATATTATATTATGTTTCGTTTACAATGTTTGATCTCTTCAACATAGCGGCATCCCTTTTCAGAAGACGGTTGAGTCCTCCCGGCTTTTGTTCTGTTCTCAAGTCCCTGGACTTAAAGTCTCATTTCTGTAGTAGACCAATTTGTTAACATCCCTTCCGACATCTAATGCAGGCTTATTTATGGGTTTTGACACCTTGAATCTTGCAGGCACCAAAAGATTACGACATACTTGCCATTCCTCTAACCAGTACCGCAATAAAGATGTTGAAACTCAGAAAGGGGACCCCTGAAGAATGGCGTCAATATCTGTCGAGTGAGCAATGACGTGCACTCATAATGGCACTCGTAAATTCTTCTCTGAACAAATTGCACATATCATACATACACTTGTTTCTTCTAAGACTTCGGCACCTTCAAACTAATTTATTCTATCATTACCTCCCACAAGCATTTTGCATTTTTTTTTTTTACTGCTAATTGATAATATGCGACTTCATTTTGAGGACCAAAATTGTC

mRNA sequence

ATGGGGAAATTTAAAGTCGCGATTTTGATCTCCATTGACTGCTCGCAGGAACCCTATCTAAGTGCTCAAATGGCCCAATTCACCGCACATAGTCGGGTTAAGTTGTTGCTCAACGGAGACGGAGTGCCATTCGGTTCAGAACCAAAAGATCGTTCGCGACACAAGCTCAGATCAGTACGAACCCTTAAGCGAAGAACTCCTTTATCCGGTGCCTCCTCCACTGGACTTTCCCCTTCGTCGTCCTCGGCTTCAGCTTTGAGGAAATCCGCTCAGCGTGTTGGTGTGAGGGGTGAGAGCGTTAGCGGAGACGACGCCATTCTTGATATTGACTATGATTACGAGTTTGAGAGTGACGATCTGGCTTGCTTCAGAGGTCTCGTCTTGGATATTTCCTACAGGCCAGTTAACGTTGTTTGTTGGAAGCGTGCAATTTGTTTGGAGTTCATGGAGAAGGCTGATGTATTGGAATACTATGACCAAACTGTGAGTTCTCCAAGTGGATCCTTCTATATACCAGCAGTCTTAAGGGTTCCTCATTTATTGCAAGTTGTAAAGAGAAGAAGAATCAAGCAGTCTTTGAGTCGTAAAAACATCCTTTATCGGGACAATTACACTTGTCAGTATTGTTCATCACATGAGAGTTTGACGATTGACCATGTTTTGCCCGTGTCCCGGGGTGGAGAATGGACATGGGAAAATCTGGTGGCCGCCTGCGTGAAATGCAATTCAAAGAAAGGGCAAAAAACTGTTGAAGAAGCAAATATGAAGCTGAAAAAGACTCCCAAGGCACCAAAAGATTACGACATACTTGCCATTCCTCTAACCAGTACCGCAATAAAGATGTTGAAACTCAGAAAGGGGACCCCTGAAGAATGGCGTCAATATCTGTCGAGTGAGCAATGACGTGCACTCATAATGGCACTCGTAAATTCTTCTCTGAACAAATTGCACATATCATACATACACTTGTTTCTTCTAAGACTTCGGCACCTTCAAACTAATTTATTCTATCATTACCTCCCACAAGCATTTTGCATTTTTTTTTTTTACTGCTAATTGATAATATGCGACTTCATTTTGAGGACCAAAATTGTC

Coding sequence (CDS)

ATGGGGAAATTTAAAGTCGCGATTTTGATCTCCATTGACTGCTCGCAGGAACCCTATCTAAGTGCTCAAATGGCCCAATTCACCGCACATAGTCGGGTTAAGTTGTTGCTCAACGGAGACGGAGTGCCATTCGGTTCAGAACCAAAAGATCGTTCGCGACACAAGCTCAGATCAGTACGAACCCTTAAGCGAAGAACTCCTTTATCCGGTGCCTCCTCCACTGGACTTTCCCCTTCGTCGTCCTCGGCTTCAGCTTTGAGGAAATCCGCTCAGCGTGTTGGTGTGAGGGGTGAGAGCGTTAGCGGAGACGACGCCATTCTTGATATTGACTATGATTACGAGTTTGAGAGTGACGATCTGGCTTGCTTCAGAGGTCTCGTCTTGGATATTTCCTACAGGCCAGTTAACGTTGTTTGTTGGAAGCGTGCAATTTGTTTGGAGTTCATGGAGAAGGCTGATGTATTGGAATACTATGACCAAACTGTGAGTTCTCCAAGTGGATCCTTCTATATACCAGCAGTCTTAAGGGTTCCTCATTTATTGCAAGTTGTAAAGAGAAGAAGAATCAAGCAGTCTTTGAGTCGTAAAAACATCCTTTATCGGGACAATTACACTTGTCAGTATTGTTCATCACATGAGAGTTTGACGATTGACCATGTTTTGCCCGTGTCCCGGGGTGGAGAATGGACATGGGAAAATCTGGTGGCCGCCTGCGTGAAATGCAATTCAAAGAAAGGGCAAAAAACTGTTGAAGAAGCAAATATGAAGCTGAAAAAGACTCCCAAGGCACCAAAAGATTACGACATACTTGCCATTCCTCTAACCAGTACCGCAATAAAGATGTTGAAACTCAGAAAGGGGACCCCTGAAGAATGGCGTCAATATCTGTCGAGTGAGCAATGA

Protein sequence

MGKFKVAILISIDCSQEPYLSAQMAQFTAHSRVKLLLNGDGVPFGSEPKDRSRHKLRSVRTLKRRTPLSGASSTGLSPSSSSASALRKSAQRVGVRGESVSGDDAILDIDYDYEFESDDLACFRGLVLDISYRPVNVVCWKRAICLEFMEKADVLEYYDQTVSSPSGSFYIPAVLRVPHLLQVVKRRRIKQSLSRKNILYRDNYTCQYCSSHESLTIDHVLPVSRGGEWTWENLVAACVKCNSKKGQKTVEEANMKLKKTPKAPKDYDILAIPLTSTAIKMLKLRKGTPEEWRQYLSSEQ

Homology

[Close]

BLAST of CmaCh06G017440 vs. TAIR 10
Match: AT2G23840.1 (HNH endonuclease )

HSP 1 Score: 332.4 bits (851), Expect = 3.7e-91
Identity = 177/285 (62.11%), Postives = 215/285 (75.44%), Query Frame = 0


Query: 24  MAQFTAHSRVKLLLNGDGVPFGSEPKDRSRHKLRSVRTLKRRTPLSGASSTGLSPSSSSA 83
           MA F+A  R+KLL + DG+ FG + +D+ R   +S+      +PL     + L   +   
Sbjct: 1   MAHFSA--RLKLLSSNDGLSFGVDSRDQFR---QSLYMAGGGSPLVPIRMSRLKFCARIF 60

Query: 84  SALRKSAQRVGVRGESVSGDDAILDIDYD---YEFESDD--------LACFRGLVLDISY 143
           S+     +R  +R   +   +  LDID D   ++F+ DD        L+CFRGLVLDISY
Sbjct: 61  SSYSFPYKRKKIR--DLDNTEKNLDIDEDNDEWDFDGDDDGLETDDHLSCFRGLVLDISY 120

Query: 144 RPVNVVCWKRAICLEFMEKADVLEYYDQTVSSPSGSFYIPAVLRVPHLLQVVKRRRIKQS 203
           RPVNVVCWKRAICLE+M+KADVLEYYDQTVSSP+GSFYIPAVLRVPHLLQVVKRRR+K S
Sbjct: 121 RPVNVVCWKRAICLEYMDKADVLEYYDQTVSSPTGSFYIPAVLRVPHLLQVVKRRRVKNS 180

Query: 204 LSRKNILYRDNYTCQYCSSHESLTIDHVLPVSRGGEWTWENLVAACVKCNSKKGQKTVEE 263
           LSRKNIL RD+YTCQYCSS E+LTIDHV+PVSRGGEWTW+NLVAAC +CNS+KGQKT +E
Sbjct: 181 LSRKNILLRDDYTCQYCSSRENLTIDHVMPVSRGGEWTWQNLVAACSRCNSRKGQKTADE 240

Query: 264 ANMKLKKTPKAPKDYDILAIPLTSTAIKMLKLRKGTPEEWRQYLS 298
           A+MKL K PK PKDYDI+AIPLT+ AI+ML+  KG PEEWRQYL+
Sbjct: 241 AHMKLLKVPKEPKDYDIVAIPLTNAAIRMLRSNKGMPEEWRQYLA 278

The following BLAST results are available for this feature:

BLAST of CmaCh06G017440 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G017440 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23840.1	3.7e-91	62.11	HNH endonuclease	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003615	HNH nuclease	SMART	SM00507	HNH_5	coord: 193..243 e-value: 8.6E-14 score: 61.8
IPR003615	HNH nuclease	CDD	cd00085	HNHc	coord: 195..246 e-value: 4.01251E-13 score: 60.9483
IPR029471	HNH endonuclease 5	PFAM	PF14279	HNH_5	coord: 206..257 e-value: 1.0E-15 score: 57.3
None	No IPR available	GENE3D	1.10.30.50		coord: 181..270 e-value: 5.1E-24 score: 86.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..84
None	No IPR available	PANTHER	PTHR33877	SLL1193 PROTEIN	coord: 76..298
None	No IPR available	PANTHER	PTHR33877:SF2	SLL1193 PROTEIN	coord: 76..298

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G017440.1	CmaCh06G017440.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
molecular_function	GO:0004519	endonuclease activity