CmaCh06G016980 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016980
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Rab-GTPase-TBC domain containing protein
Location	Cma_Chr06: 10434993 .. 10442118 (-)
RNA-Seq Expression	CmaCh06G016980
Synteny	CmaCh06G016980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGGACTAAAAATATATCCAAAAAAATAGTATAAACTTGGTGTCCCAAAGAAGGGAAAGATCGTAGTTGAAAGTTTAGAAATTATTGTAAAAAATTTCAATTTTACCAATAATTTGCGACCTCCGGTCGGGGGTTGAGGAAAGATTAGGGGGGGCAAACGGAGCATGATTCTGTTGAGCGAACATGAAGAACACTGGCATTAACACTCTCGGCGGCGAAGATCGACAAACAAAAGACAATACGATCTCAGGCCTCGATTCCCGATTCAATCAGACCCTCAGAAATGTTCAAGGGTAACAATCTCAATTCCCCGTACTTCTTGTTTCCAAATCTCTGATCTCCCTCCCTTCCCATCGCCCTCTCTTTTCTGTCTCTCTTGCTTGAATCTTCATTCGATTTTGAAATCCAGTTGCCCAACTAAGATTTCGATCTCCAATTTCATTACGAATCGTTTTCTCGTATGCTATTTTCACATTTAATCGGTTAGCTCAATAATGTAAGCTTTTAATCTTCGGAGTCTCTGTTAGATTATTGAGGGAATCTTCATTGGCTCTGTAGATCTTTATATATGAGCTACGGCTTACATAGATGCGATCTGGCCTCCATGCCGTTTTACATTTGGATTCTGGGAAATGTGTGGGAGCACTACAGATGGAAATTTAAATTGCTACTCATTTCCTGTTTGTTTAACTATAATGTTGGGGCTTTTAATCCAGGAACTTTAGCAGACTGCCCAACTCTTGACACTTGTAGCTGGATAATCTAAACCAGATATCGACTAGTCTGAATTTTGATATTGTCAGAATTGGATAAAACTATCCTGTAACTTTCTAAATGCTTCAATTCCTCAAAAGTTACCTGGTGGAGTCTACCTTCTTATTCATTAAATGTTCTTAAGGCTATCACACTTGGTAGATGCCGCTAGTTGATCCCATAAATTCTTAATGACATCTAGAATCATCTCTGATGCAGGCTGCTGAAAGGCCGCAGTATTCCTGGAAAAGTATTGCTCACTAGAAGATCAGACGTGATCGACCCCTCGAGCGTATCAGAAAAATCATCAAATTATTTGAGGAGCTTGTCGCATAATGATATTGGTACAAGCAACCGCATTGCCAAATCTGAGGAGGTGAGACTGATTTGAAAATTTTCATGTTAGTTTGGATGTGAAGACACATTATAGTGAAACTCTCTCTTTCAATATAGGAAGATATTCAGATTATGAATAATAATACAATTGTTAGTAAGTCTAAATCTTCAACCTCCAACACCGAGGATCTTGCTAAAGAAGTCCAAAAGCCAATAATGGGTGCTAGAGCAACAGATTCTGCAAGGGTCCTGAAGTTCACAAAGTTGCTATCAGGAACAACAATCATATCAGGTATATATATGCGTATAGTTTTAAATAATCCTCCCCCATCATGAACTCAAATATTCCTATGCACAGTCAAAACTTGGTAAAGGAACACTAATGCATTGGGGTGCTTATATTCATTTGACTATGTAGACAAGTTGCGTGAGCTAGCTTGGAGTGGCGTTCCGCCATATATGCGCCCAAATATATGGAGACTTCTTTTGGTAAGTTGGATCTGATACTCATAATTTCTGATTGCTTGATGGAAAGCAGGATTTCTTCTTCCTCCTTTTCCCCCCTTGTTTTTCCAAGTGATAACTGGTATATGGTGCTAATTGTTAATATATATGCATGCATATTTTCTGACGAGGAAAATATTCCTTCTCAACGAGCTCTTTTTCCTTCAAATTGATCATTTTGATTATAAATTCCAACGACAGAAGGCTTGTGCCAGTAACTGTTTGGTATGGGTCTAGATCTCATATGACTAAGTTTTCTTGCGGGTGTGGCCAAGGGCTTGGATTGAATGTGGTAGAGATGGGCCTCATGCCTCATTCATTTAACCATCTGACTAGCTCTACCCCATGCCCTTCCATCGGGTGGGGAACAGAGTGGGATGTTGAGTTGAACTCGAGGTAGGCTTGCTTCCTCAATGCTTGCATAGCTAAAAAAATGAAAAATGACTCACAATGGAATGTTCTTCAACATATCTCCAAGAAAAGCTAGACTACATGTACGTCTCGACGACCATAAAACGGGACTGCGAGAAGGAACTATTCTTGTTTAGAATCCTCTAAAATCAAACAAGGTTCTTAAAAATCGTCTTATGGGCAGTGTTTTAGGTGCATATTCTTTAGATGCTGATTATGCATTTCTTTGGTCTAGCATCAGTGGATTTGCTCCTAGGATTATTTTTGTTCCTCCACTGAGCGCTTTGTTCTCCATTGTTTTATTTGGTTTCTTACATTTTTGTAGAGTTCTGTTCTTTTTTGGTCTGGTTGCTTGCGTTTTTCACTCTCTATGGGACATTGTTCTCTCAACATTTTCTTTCTTTGTGGTTACTTCTGTGAGTTATTACTATAAGTAAGCATTATTTATCAATTCCTTAAGATTTACAACGTCGATTATTTATCAATTTGACAGAGACTTCCCTAACTTGTCTGATAGAATCATTTAGCTGCTTGTCCAAAATTTAAAAATGCACTGACAACAGGGCTATGCACCACCTAATTCAGATAGAAAGGAGGGAGTTCTACGAAGAAAGAGGCTTGAATATCTTGACAGCGTTGCACAATTCTATGACATTCCTGATACTGAACGGTCTGACGATGAGATAAACATGCTCCGCCAGGTAATAATGCCTGCGAGTCAGTGCTGAATTTTATAAATTGTCCTCTCTAGTTCTACCAGTCCTTGAACCATGTGTTCCTTGTTAGATTGCTGTTGATTGCCCTAGAACCGTACCTGATGTTACTTTCTTTCAACAAGCACAAGTTCAGAAATCCTTGGAGCGTATTCTCTATACTTGGTAAGACATTTTTCATGAGAAACAAAAGAAATGGGTGAAACTGTATCCTCTGCGTTGCAATGTCACCGACTTGTACCAGAATCCATTTATTTATTTGTATCTCATTTACACAATTGTTTTCAAACCAGGGCTATTCGACATCCTGCGAGCGGATACGTTCAAGGAATAAATGATCTTGCTACTCCATTTTTAGTTGTCTTCTTGTCAGAATACTTAGAAGGTGGTGTTGAGAAATGGTCTATCTCCGATCTATCTCCTGACAAGATCACAAACATTGAGGCAGATTGCTACTGGTGTCTATCCAAATTACTTGATGGTATGCAAGATCATTATACGTTTGCACAACCGGGAATTCAGCGGCTTGTATTTAAGTTGAAGGAACTGGTTAGGAGGATTGATGGTAACCTCTCTTTCTGGACTCGACTCTTTTGTAGAAGCCATATGCTTGAATTTCCTTCAATTTATCTTCCTCACAGCCTAGAGAATCGGATATGACAAGCCATTTATTAACCAATCTTGTATGCTTAATTTGACCAGAACCTGTTTCAAGACACATGGAGGAGCAGGGTCTGGAGTTTCTTCAATTCGCTTTTAGGTGGTTCAACTGTCTTCTGATACGGGAGGTTTGCCAAGAACTTTGTATTCATAATGCTATAGCTTCTTCCAGTTACTTCTGTTGGAAATAGATTAAAATCAAATCACATTCTACAATTAAGATAATTCAATGTTGATGATATTGTTTTGTTCCATCAGATTCCTTTCCATCTTGTTACCCGGTTATGGGATACTTATCTTGCGGAAGGGGACTCATTGCCAGATTTCCTTGTCTACATATTTGCCAGTTTTCTGTTGACGGTAAGGATATCAATTTTGTTTTGATAATCCAATTCTAGAATGGAGCCTAGGTAAATGGTTTGAATGGTTTTCATTACTGAAGCATCACTGTAATGATCCAAAGATTCTGATGCCTCTGAGTAGCTCTTTGAAATGAAGGGCAATATCATATCATTTTCACCCACTTGAGTTTCTGTTCAAAGTATTTTGTGTCGATCTTGTTTCTGAATTAGCCTTTTCCCTTCGTTTCAGTGGTCTGAAGAGCTGCAGAAACTTGATTTCCAAGAATTGGTGATGTTTCTCCAGCATGTTCCAACTCAAAATTGGACCCATCAAGAACTTGAGATGGTGCTTTCAAGAGCATACATATGGCACAGTATGTTCAACAATTCACCCAGACACCTTGTTAGCTGAATGGGATTTGTTCTACACACTCATTCACGCTTGGAAAGTTGACCTATTTTTGCCTCCTTTTCTCTTCTTCCTCCAATGGGGTTTCTGCCCTGCTGCTCTGCTGCTCTGCTTGTGTATGAAAACTCTTCAAATCTTCTGCCATGCGTGTACCATCATCCCTCCCTTGTATCGTCTGTATTTCCCCAGCAATTATTCGTAGATTTCTGTATTTGGACAGAGCAAAGTAAAGTTAAACGTTTTTGTTCAGATATAAATGAAATTCTCCGTCAAGAAGTAGATAGGTGATTGATATTGATCCCCTCTCATACTCTCATCTTTTTTTAATGTTCAAATTTTTGTATGAATTTTTGGAAGCATAAATGCAAAAAGATAACGACAAAATTTAAATGATTTTCAAAACATGTCATAGACCAAGCTTAGATACTTCAAAAATATCCGAGCTGATGGAAACGAATTCAAATATAAAAGGATTTACCTTTCTGATATTTTCCCGAGCTGGTGGAGTGGTGGGTGGTGGGTGGGAAGCGAGAAGGATAATGGGAATATCAGCCTCAAAACGAGTCAAGAACTCACTTTCGAACTCCCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGCATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTTCCAAGTGGCTTCCCTCTCCCCCGACTCGGCTGCAGGTCGACTCAGCCCTGCAAGCCGTCAATCGCGGAGACGCGGGTCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCATTGGGCGATCGAGCTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATAGCAGGAATCGCGGGAATCGGCGCCGTGACTAGGTCGGGAAAGGACCTGGTTGGGAGTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGTACCTTGGCTTGTCTGGATAGTAAACGGAGCGGTGGATGCAGTTTGTAAATAACTTGTTTTTGTTGAAGATTAATTATGAAATAAAACTATGCCCTCCTTCTATTTTAGTTTTTATATCTTTTTTAAATATTCTGAAATAACTTTTATATTATTTAAAATTGACACCAATTTTAAAATAACTATTTATTATTTTTTAAAATGATTTGTAGTTAATTTCTATTCAACTTTCTAAAACAATAGTAATAAAGTTAAGGTTTTCAAATATTTAATTTTAGTTTATGTTTATTTTAATAAATTTTGAAATTAAAATTAGTTTTTAAACAGATAGTTTAAAATAATAGCAATTTATGGTTTGTAATTAAATGTATTTTGATTTAAAATGTTAACAAAATTGGAAGTAAAATAGACGTATTTTAAAAATCATAATTTAGGGTTTTTATTGTTCCATATTCGTTCACTCCTCTGTCGTCGTCTCCCGTTTGTAAACCCTTTCTAAACCTTTGTAGCACTCGATTTCAAGTTGCAGACCTCAATTCAGGTATTTTGCTTAATTTCTCCTTCATCTTGCTTGAATATCTGTTCTTTGATTCCTTTTATTTTCTATTATCTCGATTAACTTCTTGACCACTAATAATGTCTCTCCATTTCGCTATTAGATGCGAACCTGTGAAATCTCCAACCAAGCCCTAACTCAGTCGGCAGTCTCCTCTTTTGAATTTTGTTTTTCGCGAATCTAATGCTTTCAGTTGTTGTTCTTTGCTGATTTTGTTCTGTTATTTGATGGCCATACTCTTATTATAACTCTGTTTGTTAACTTCCATTATCTCCCTGTTAATTTTTCTGGGTTGCATTAACCTTTGTGAAGCAGGGTTGCTGTTGTAAGGATGGTTGAGCTTCTCTTTGATGATATCTTTAAGATCGAGCGATTAAACCCAGATGGCAAAAAGTTTGATAAAGGTGCGTTTTTTCTGTAAAATAGTTGCTCTCCCTTTTGCATGCAGATTCTTCTTTTACCTCTTTGATGTGCATAAAAGTTGTGTGTAAATGTTTTAAGAACTTTTCAACACAGTTAAGCAAATGACATTGGTGTTTTCATAATCTGTCCAACAGTTACTCGAATAGAGGCAAAGAGCGAGAAGTTTGACATGTTCATGCATTTGGACATTAATACAGAAATATACAACTTGAAAGAAGGTGAGAAGTTTTCAATGGCACTGGCTCCAACTCTGAATCTTGATGGAACCCCTGACACAGGCTATTTTCTTCAGGTAACTTGTTCTTCCAGTGATTTATAGTCTGTAACAGGAAACTTCCAATCAATTAGGGAATATTGGGTTTCCATAGTTTTTGCATATGTCTATTCATTTTCATGACTGGTTATTGGTTGTTGTCTGACGGCTATATTTGTGTCTTCCTATGTTCAATTATTAGTTTGGTCTTACGCATTCTCGAGGCTTGAATTGTTATCATGTGTACAGGGCAATAGGAAGTCACTTGCTGACAGATATGAATATGTCATGCACGGGAAGCTGTTCAGAATATCAGAAAGTTCTGGGCATGTCGGTAAAGCGTACGTGTTATAACTTCCTGTAAACAATTTTGTTCTAATACTACAATTCTATTGCATGAGCCATGAAAGAAGCAAGAGCTTGACGTTCCTGCGCTTATATTTTATCTATGTTTGAGCAAGAATGTGTCGTAGCGCATCTTCTCCTGTCTGTGATGGCTACCATAAATGGCATTTATGGTGATTAATCCATTTTGGTTTCTTTTTCTGAACAGTCTACGAACGTAGATGATACATATTTTCCGGTTGAATCTTTATCTTGAATAGAGTATTTCATCTGAATCCAGGGAAATAGATGCTTCTTTTGGTGGGCTTCTGATGATGCTGAAGGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGA

mRNA sequence

CTTGGACTAAAAATATATCCAAAAAAATAGTATAAACTTGGTGTCCCAAAGAAGGGAAAGATCGTAGTTGAAAGTTTAGAAATTATTGTAAAAAATTTCAATTTTACCAATAATTTGCGACCTCCGGTCGGGGGTTGAGGAAAGATTAGGGGGGGCAAACGGAGCATGATTCTGTTGAGCGAACATGAAGAACACTGGCATTAACACTCTCGGCGGCGAAGATCGACAAACAAAAGACAATACGATCTCAGGCCTCGATTCCCGATTCAATCAGACCCTCAGAAATGTTCAAGGGCTGCTGAAAGGCCGCAGTATTCCTGGAAAAGTATTGCTCACTAGAAGATCAGACGTGATCGACCCCTCGAGCGTATCAGAAAAATCATCAAATTATTTGAGGAGCTTGTCGCATAATGATATTGGTACAAGCAACCGCATTGCCAAATCTGAGGAGGAAGATATTCAGATTATGAATAATAATACAATTGTTAGTAAGTCTAAATCTTCAACCTCCAACACCGAGGATCTTGCTAAAGAAGTCCAAAAGCCAATAATGGGTGCTAGAGCAACAGATTCTGCAAGGGTCCTGAAGTTCACAAAGTTGCTATCAGGAACAACAATCATATCAGACAAGTTGCGTGAGCTAGCTTGGAGTGGCGTTCCGCCATATATGCGCCCAAATATATGGAGACTTCTTTTGGGCTATGCACCACCTAATTCAGATAGAAAGGAGGGAGTTCTACGAAGAAAGAGGCTTGAATATCTTGACAGCGTTGCACAATTCTATGACATTCCTGATACTGAACGGTCTGACGATGAGATAAACATGCTCCGCCAGATTGCTGTTGATTGCCCTAGAACCGTACCTGATGTTACTTTCTTTCAACAAGCACAAGTTCAGAAATCCTTGGAGCGTATTCTCTATACTTGGGCTATTCGACATCCTGCGAGCGGATACGTTCAAGGAATAAATGATCTTGCTACTCCATTTTTAGTTGTCTTCTTGTCAGAATACTTAGAAGGTGGTGTTGAGAAATGGTCTATCTCCGATCTATCTCCTGACAAGATCACAAACATTGAGGCAGATTGCTACTGGTGTCTATCCAAATTACTTGATGGTATGCAAGATCATTATACGTTTGCACAACCGGGAATTCAGCGGCTTGTATTTAAGTTGAAGGAACTGGTTAGGAGGATTGATGAACCTGTTTCAAGACACATGGAGGAGCAGGGTCTGGAGTTTCTTCAATTCGCTTTTAGGTGGTTCAACTGTCTTCTGATACGGGAGATTCCTTTCCATCTTGTTACCCGGTTATGGGATACTTATCTTGCGGAAGGGGACTCATTGCCAGATTTCCTTGTCTACATATTTGCCAGTTTTCTGTTGACGTGGTCTGAAGAGCTGCAGAAACTTGATTTCCAAGAATTGGTGATGTTTCTCCAGCATGTTCCAACTCAAAATTGGACCCATCAAGAACTTGAGATGGTGCTTTCAAGAGCATACATATGGCACAAGCAAAGTAAAGTTAAACGTTTTTGTTCAGATATAAATGAAATTCTCCGTCAAGAAGTAGATAGACCAAGCTTAGATACTTCAAAAATATCCGAGCTGATGGAAACGAATTCAAATATAAAAGGATTTACCTTTCTGATATTTTCCCGAGCTGGTGGAGTGGTGGGTGGTGGGTGGGAAGCGAGAAGGATAATGGGAATATCAGCCTCAAAACGAGTCAAGAACTCACTTTCGAACTCCCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGCATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTTCCAAGTGGCTTCCCTCTCCCCCGACTCGGCTGCAGGTCGACTCAGCCCTGCAAGCCGTCAATCGCGGAGACGCGGGTCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCATTGGGCGATCGAGCTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATAGCAGGAATCGCGGGAATCGGCGCCGTGACTAGGTCGGGAAAGGACCTGGTTGGGAGTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGGTTGCTGTTGTAAGGATGGTTGAGCTTCTCTTTGATGATATCTTTAAGATCGAGCGATTAAACCCAGATGGCAAAAAGTTTGATAAAGTTACTCGAATAGAGGCAAAGAGCGAGAAGTTTGACATGTTCATGCATTTGGACATTAATACAGAAATATACAACTTGAAAGAAGGTGAGAAGTTTTCAATGGCACTGGCTCCAACTCTGAATCTTGATGGAACCCCTGACACAGGCTATTTTCTTCAGGGCAATAGGAAGTCACTTGCTGACAGATATGAATATGTCATGCACGGGAAGCTGTTCAGAATATCAGAAAGTTCTGGGCATGTCGGTAAAGCGGAAATAGATGCTTCTTTTGGTGGGCTTCTGATGATGCTGAAGGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGA

Coding sequence (CDS)

ATGAAGAACACTGGCATTAACACTCTCGGCGGCGAAGATCGACAAACAAAAGACAATACGATCTCAGGCCTCGATTCCCGATTCAATCAGACCCTCAGAAATGTTCAAGGGCTGCTGAAAGGCCGCAGTATTCCTGGAAAAGTATTGCTCACTAGAAGATCAGACGTGATCGACCCCTCGAGCGTATCAGAAAAATCATCAAATTATTTGAGGAGCTTGTCGCATAATGATATTGGTACAAGCAACCGCATTGCCAAATCTGAGGAGGAAGATATTCAGATTATGAATAATAATACAATTGTTAGTAAGTCTAAATCTTCAACCTCCAACACCGAGGATCTTGCTAAAGAAGTCCAAAAGCCAATAATGGGTGCTAGAGCAACAGATTCTGCAAGGGTCCTGAAGTTCACAAAGTTGCTATCAGGAACAACAATCATATCAGACAAGTTGCGTGAGCTAGCTTGGAGTGGCGTTCCGCCATATATGCGCCCAAATATATGGAGACTTCTTTTGGGCTATGCACCACCTAATTCAGATAGAAAGGAGGGAGTTCTACGAAGAAAGAGGCTTGAATATCTTGACAGCGTTGCACAATTCTATGACATTCCTGATACTGAACGGTCTGACGATGAGATAAACATGCTCCGCCAGATTGCTGTTGATTGCCCTAGAACCGTACCTGATGTTACTTTCTTTCAACAAGCACAAGTTCAGAAATCCTTGGAGCGTATTCTCTATACTTGGGCTATTCGACATCCTGCGAGCGGATACGTTCAAGGAATAAATGATCTTGCTACTCCATTTTTAGTTGTCTTCTTGTCAGAATACTTAGAAGGTGGTGTTGAGAAATGGTCTATCTCCGATCTATCTCCTGACAAGATCACAAACATTGAGGCAGATTGCTACTGGTGTCTATCCAAATTACTTGATGGTATGCAAGATCATTATACGTTTGCACAACCGGGAATTCAGCGGCTTGTATTTAAGTTGAAGGAACTGGTTAGGAGGATTGATGAACCTGTTTCAAGACACATGGAGGAGCAGGGTCTGGAGTTTCTTCAATTCGCTTTTAGGTGGTTCAACTGTCTTCTGATACGGGAGATTCCTTTCCATCTTGTTACCCGGTTATGGGATACTTATCTTGCGGAAGGGGACTCATTGCCAGATTTCCTTGTCTACATATTTGCCAGTTTTCTGTTGACGTGGTCTGAAGAGCTGCAGAAACTTGATTTCCAAGAATTGGTGATGTTTCTCCAGCATGTTCCAACTCAAAATTGGACCCATCAAGAACTTGAGATGGTGCTTTCAAGAGCATACATATGGCACAAGCAAAGTAAAGTTAAACGTTTTTGTTCAGATATAAATGAAATTCTCCGTCAAGAAGTAGATAGACCAAGCTTAGATACTTCAAAAATATCCGAGCTGATGGAAACGAATTCAAATATAAAAGGATTTACCTTTCTGATATTTTCCCGAGCTGGTGGAGTGGTGGGTGGTGGGTGGGAAGCGAGAAGGATAATGGGAATATCAGCCTCAAAACGAGTCAAGAACTCACTTTCGAACTCCCCCGATTTCGACTCAGCCTGCGATTCCACTTTCTCCCACTGCCTTGACCTAACGCAGCACGCATACGCCGGCGTTTTCCCCTACCAACTCTGCACCGCCGCCGACCACCTCCACCGTCTCCTCACCACCGTCCGCCCTCATCCACTCATTTCCAAGTGGCTTCCCTCTCCCCCGACTCGGCTGCAGGTCGACTCAGCCCTGCAAGCCGTCAATCGCGGAGACGCGGGTCGTGAAGACGAAGAAACCCTAGGACCGATCCGCTTCAAGCATTGGGCGATCGAGCTATTCGCAGAGGCTGTAGTGAAGAATGTCAGCAAAGAAGTGATGTTTCGAGTTCCGGTCGGAATAGCAGGAATCGCGGGAATCGGCGCCGTGACTAGGTCGGGAAAGGACCTGGTTGGGAGTATGGTTGCAGTGTACGCGCTTGGCGTTGCGACTTCGATGGTTGCTGTTGTAAGGATGGTTGAGCTTCTCTTTGATGATATCTTTAAGATCGAGCGATTAAACCCAGATGGCAAAAAGTTTGATAAAGTTACTCGAATAGAGGCAAAGAGCGAGAAGTTTGACATGTTCATGCATTTGGACATTAATACAGAAATATACAACTTGAAAGAAGGTGAGAAGTTTTCAATGGCACTGGCTCCAACTCTGAATCTTGATGGAACCCCTGACACAGGCTATTTTCTTCAGGGCAATAGGAAGTCACTTGCTGACAGATATGAATATGTCATGCACGGGAAGCTGTTCAGAATATCAGAAAGTTCTGGGCATGTCGGTAAAGCGGAAATAGATGCTTCTTTTGGTGGGCTTCTGATGATGCTGAAGGGGGATCCCTCACATTGCAGCAAGTTTGAACTTGACCAGAGGCTGTTTCTTCTCATCAGGAAGGTGTGA

Protein sequence

MKNTGINTLGGEDRQTKDNTISGLDSRFNQTLRNVQGLLKGRSIPGKVLLTRRSDVIDPSSVSEKSSNYLRSLSHNDIGTSNRIAKSEEEDIQIMNNNTIVSKSKSSTSNTEDLAKEVQKPIMGARATDSARVLKFTKLLSGTTIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDIPDTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEELQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAYIWHKQSKVKRFCSDINEILRQEVDRPSLDTSKISELMETNSNIKGFTFLIFSRAGGVVGGGWEARRIMGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTVRPHPLISKWLPSPPTRLQVDSALQAVNRGDAGREDEETLGPIRFKHWAIELFAEAVVKNVSKEVMFRVPVGIAGIAGIGAVTRSGKDLVGSMVAVYALGVATSMVAVVRMVELLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMALAPTLNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHVGKAEIDASFGGLLMMLKGDPSHCSKFELDQRLFLLIRKV

Homology

[Close]

BLAST of CmaCh06G016980 vs. ExPASy Swiss-Prot
Match: Q9NU19 (TBC1 domain family member 22B OS=Homo sapiens OX=9606 GN=TBC1D22B PE=1 SV=3)

HSP 1 Score: 325.1 bits (832), Expect = 2.3e-87
Identity = 180/417 (43.17%), Postives = 256/417 (61.39%), Query Frame = 0


Query: 42  RSIPGKVLLTRRSDVIDPSSVSEKSSNYLRSLSHNDIGTSNRIAKSEEEDIQIMNNNTIV 101
           +++  KV L   + V++  S         +S + +D+  + ++ KS        +++  +
Sbjct: 86  QTLNSKVALATAAQVLENHSKLRVKPERSQSTT-SDVPANYKVIKS--------SSDAQL 145

Query: 102 SKSKSSTSNTEDLAKEVQKPI-----MGARATD-------------SARVLKFTKLLSGT 161
           S++ S T     L K+   P+     + AR +D               R+ KF +LLS  
Sbjct: 146 SRNSSDTCLRNPLHKQQSLPLRPIIPLVARISDQNASGAPPMTVREKTRLEKFRQLLSSQ 205

Query: 162 TIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDIP 221
               D+LR+ +W GVP  +RP  WRLL GY P N++R++  L+RKR EY   + Q+YD  
Sbjct: 206 NTDLDELRKCSWPGVPREVRPITWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSR 265

Query: 222 DTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTWAIRHPASGYVQGIND 281
           + E   D     RQI +D PRT P +  FQQ  VQ+  ERIL+ WAIRHPASGYVQGIND
Sbjct: 266 NEEHHQD---TYRQIHIDIPRTNPLIPLFQQPLVQEIFERILFIWAIRHPASGYVQGIND 325

Query: 282 LATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGI 341
           L TPF VVFLSEY+E  VE + +++LS D + +IEAD +WC+SKLLDG+QD+YTFAQPGI
Sbjct: 326 LVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYTFAQPGI 385

Query: 342 QRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAE 401
           Q+ V  L+ELV RIDE V  H     +E+LQFAFRW N LL+RE+P     RLWDTY +E
Sbjct: 386 QKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSE 445

Query: 402 GDSLPDFLVYIFASFLLTWSEE-LQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAY 440
            +    F +Y+ A+FL+ W +E L + DFQ L+M LQ++PT +W ++E+ ++L+ AY
Sbjct: 446 PEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIGLLLAEAY 490

[Close]

BLAST of CmaCh06G016980 vs. ExPASy Swiss-Prot
Match: Q95LL3 (TBC1 domain family member 22B OS=Macaca fascicularis OX=9541 GN=TBC1D22B PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.0e-87
Identity = 180/417 (43.17%), Postives = 256/417 (61.39%), Query Frame = 0


Query: 42  RSIPGKVLLTRRSDVIDPSSVSEKSSNYLRSLSHNDIGTSNRIAKSEEEDIQIMNNNTIV 101
           +++  KV L   + V++  S         +S + +D+  + ++ KS        +++  +
Sbjct: 86  QTLNSKVALATAAQVLENHSKLRVKPERSQSTT-SDVPANYKVIKS--------SSDAQL 145

Query: 102 SKSKSSTSNTEDLAKEVQKPI-----MGARATD-------------SARVLKFTKLLSGT 161
           S++ S T     L K+   P+     + AR +D               R+ KF +LLS  
Sbjct: 146 SRNSSDTCLRNPLHKQQSLPLRPIIPLVARISDQNASGAPPMTVREKTRLEKFRQLLSSH 205

Query: 162 TIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDIP 221
               D+LR+ +W GVP  +RP  WRLL GY P N++R++  L+RKR EY   + Q+YD  
Sbjct: 206 NTDLDELRKCSWPGVPREVRPVTWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSR 265

Query: 222 DTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTWAIRHPASGYVQGIND 281
           + E   D     RQI +D PRT P +  FQQ  VQ+  ERIL+ WAIRHPASGYVQGIND
Sbjct: 266 NEEHHQD---TYRQIHIDIPRTNPLIPLFQQPLVQEIFERILFIWAIRHPASGYVQGIND 325

Query: 282 LATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGI 341
           L TPF VVFLSEY+E  VE + +++LS D + +IEAD +WC+SKLLDG+QD+YTFAQPGI
Sbjct: 326 LVTPFFVVFLSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDGIQDNYTFAQPGI 385

Query: 342 QRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAE 401
           Q+ V  L+ELV RIDE V  H     +E+LQFAFRW N LL+RE+P     RLWDTY +E
Sbjct: 386 QKKVKALEELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDTYQSE 445

Query: 402 GDSLPDFLVYIFASFLLTWSEE-LQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAY 440
            +    F +Y+ A+FL+ W +E L + DFQ L+M LQ++PT +W ++E+ ++L+ AY
Sbjct: 446 PEGFSHFHLYVCAAFLIKWRKEILDEEDFQGLLMLLQNLPTIHWGNEEIGLLLAEAY 490

[Close]

BLAST of CmaCh06G016980 vs. ExPASy Swiss-Prot
Match: O59737 (GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=gyp1 PE=3 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 2.1e-85
Identity = 157/350 (44.86%), Postives = 234/350 (66.86%), Query Frame = 0


Query: 98  NTIVSKSKSSTSNTEDLAKEVQKPIMGARATDS----ARVLKFTKLLSGTTIISDKLREL 157
           +T  S+ K  +S    L  ++    +     +S    +R+ KF+++L    +  + LR L
Sbjct: 153 DTTTSRQKLHSSGRFPLPAKLAHRSVEVEVAESNALVSRIKKFSRILDAPIVDLNALRTL 212

Query: 158 AWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRKRLEYLDSVAQFYDIPDTERSDDEIN 217
           AW+G+P   RP +W+ LLGY P N+ R+E  L+RKR EY  +    ++  +TE    +  
Sbjct: 213 AWNGIPSEHRPIVWKYLLGYLPCNASRREVTLKRKRDEYNAAKDSCFN-TNTEPPPLDQT 272

Query: 218 MLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTWAIRHPASGYVQGINDLATPFLVVFL 277
           + RQI +D PRT P +  +Q    Q+ LERILY WA RHPASGYVQGI+DL TPF+ VFL
Sbjct: 273 IWRQIVLDVPRTNPSILLYQNPLTQRMLERILYVWASRHPASGYVQGISDLVTPFIQVFL 332

Query: 278 SEYL-EGGVEKWSISDLSPDKITNIEADCYWCLSKLLDGMQDHYTFAQPGIQRLVFKLKE 337
           SEY+ +     + I+ L      +IEAD YWCLSKLLDG+QD+Y  AQPGI+R V  L+E
Sbjct: 333 SEYIGDKDPMTYDIALLDETNRNDIEADAYWCLSKLLDGIQDNYIHAQPGIRRQVNNLRE 392

Query: 338 LVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREIPFHLVTRLWDTYLAEG-DSLPDFL 397
           L  RIDEP+ +H++ +G++FLQF+FRW NCLL+RE+    + R+WDTY+AEG     +F 
Sbjct: 393 LTLRIDEPLVKHLQMEGVDFLQFSFRWMNCLLMRELSISNIIRMWDTYMAEGVQGFSEFH 452

Query: 398 VYIFASFLLTWSEELQKLDFQELVMFLQHVPTQNWTHQELEMVLSRAYIW 442
           +Y+ A+FL+ WS ELQK++FQ++++FLQ +PT++W+ +++E++LS A++W
Sbjct: 453 LYVCAAFLVKWSSELQKMEFQDILIFLQSIPTKDWSTKDIEILLSEAFLW 501

[Close]

BLAST of CmaCh06G016980 vs. ExPASy Swiss-Prot
Match: Q8WUA7 (TBC1 domain family member 22A OS=Homo sapiens OX=9606 GN=TBC1D22A PE=1 SV=2)

HSP 1 Score: 315.8 bits (808), Expect = 1.4e-84
Identity = 154/313 (49.20%), Postives = 214/313 (68.37%), Query Frame = 0


Query: 129 DSARVLKFTKLLSGTTIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRK 188
           +++R+ KF +LL+G     ++LR L+WSG+P  +RP  W+LL GY P N DR+   L+RK
Sbjct: 194 EASRLDKFKQLLAGPNTDLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRK 253

Query: 189 RLEYLDSVAQFYDIPDTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTW 248
           + EY   +  +YD  + E   D     RQI +D PR  P+     Q +V +  ERIL+ W
Sbjct: 254 QKEYFAFIEHYYDSRNDEVHQD---TYRQIHIDIPRMSPEALIL-QPKVTEIFERILFIW 313

Query: 249 AIRHPASGYVQGINDLATPFLVVFLSEYLEG-GVEKWSISDLSPDKITNIEADCYWCLSK 308
           AIRHPASGYVQGINDL TPF VVF+ EY+E   V+   +S +  + + NIEAD YWC+SK
Sbjct: 314 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSK 373

Query: 309 LLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIRE 368
           LLDG+QD+YTFAQPGIQ  V  L+ELV RIDE V RH+++  + +LQFAFRW N LL+RE
Sbjct: 374 LLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMRE 433

Query: 369 IPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEE-LQKLDFQELVMFLQHVPTQNW 428
           +P     RLWDTY +E D    F +Y+ A+FL+ W +E L++ DFQEL++FLQ++PT +W
Sbjct: 434 VPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHW 493

Query: 429 THQELEMVLSRAY 440
             +++ ++L+ AY
Sbjct: 494 DDEDISLLLAEAY 502

[Close]

BLAST of CmaCh06G016980 vs. ExPASy Swiss-Prot
Match: Q95KI1 (TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis OX=9541 GN=TBC1D22A PE=2 SV=2)

HSP 1 Score: 314.7 bits (805), Expect = 3.1e-84
Identity = 153/313 (48.88%), Postives = 215/313 (68.69%), Query Frame = 0


Query: 129 DSARVLKFTKLLSGTTIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRK 188
           +++R+ KF +LL+G     ++LR+L+WSG+P  +RP  W+LL GY P N DR+   L+RK
Sbjct: 174 EASRLDKFEQLLAGPNTDLEELRKLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRK 233

Query: 189 RLEYLDSVAQFYDIPDTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTW 248
           + EY   +  +YD  + E   D     RQI +D PR  P+     Q +V +  ERIL+ W
Sbjct: 234 QKEYFAFIEHYYDSRNDEVHQD---TYRQIHIDIPRMSPEALIL-QPKVTEIFERILFIW 293

Query: 249 AIRHPASGYVQGINDLATPFLVVFLSEYLEG-GVEKWSISDLSPDKITNIEADCYWCLSK 308
           AIRHPASGYVQGINDL TPF VVF+ EY+E   V+   +S +  + + NIEAD YWC+SK
Sbjct: 294 AIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLRNIEADTYWCMSK 353

Query: 309 LLDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIRE 368
           LLDG+QD+YTFAQPGIQ  V  L+ELV RIDE V RH+++  + +LQFAFRW N LL+RE
Sbjct: 354 LLDGIQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMRE 413

Query: 369 IPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEE-LQKLDFQELVMFLQHVPTQNW 428
           +P     RLWDTY +E +    F +Y+ A+FL+ W +E L++ DFQEL++FLQ++PT +W
Sbjct: 414 VPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHW 473

Query: 429 THQELEMVLSRAY 440
             +++ ++L+ AY
Sbjct: 474 DDEDISLLLAEAY 482

[Close]

BLAST of CmaCh06G016980 vs. TAIR 10
Match: AT2G30710.1 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 647.9 bits (1670), Expect = 1.1e-185
Identity = 322/434 (74.19%), Postives = 370/434 (85.25%), Query Frame = 0


Query: 12  EDRQTKDNTISGLDSRFNQTLRNVQGLLKGRSIPGKVLLTRRSDVIDPSSVSEKSSNYLR 71
           ED Q K +     DSRFNQTL+NVQG LKGRSIPGKVLLTRRSD   P  +   S  Y R
Sbjct: 5   EDEQQKRD-----DSRFNQTLKNVQGFLKGRSIPGKVLLTRRSDP-PPYPI---SPTYQR 64

Query: 72  SLSHNDIGTSNRI---AKSEEEDIQIMNNNTIVSKSKSSTSNTEDLAKEVQKPIMGARAT 131
           SLS ND G +       + E+ +    ++NT   K +S+ S+ E   KEVQ   +G R++
Sbjct: 65  SLSENDAGRNELFESPVEVEDHNSSKKHDNTYAGKLRSN-SSAERSVKEVQNLKIGVRSS 124

Query: 132 DSARVLKFTKLLSGTTIISDKLRELAWSGVPPYMRPNIWRLLLGYAPPNSDRKEGVLRRK 191
           DSARV+KF K+LS TT+I +KLRELAW+GVP YMRP++WRLLLGYAPPNSDR+E VLRRK
Sbjct: 125 DSARVMKFNKVLSETTVILEKLRELAWNGVPHYMRPDVWRLLLGYAPPNSDRREAVLRRK 184

Query: 192 RLEYLDSVAQFYDIPDTERSDDEINMLRQIAVDCPRTVPDVTFFQQAQVQKSLERILYTW 251
           RLEYL+SV QFYD+PD+ERSDDEINMLRQIAVDCPRTVPDV+FFQQ QVQKSLERILYTW
Sbjct: 185 RLEYLESVGQFYDLPDSERSDDEINMLRQIAVDCPRTVPDVSFFQQEQVQKSLERILYTW 244

Query: 252 AIRHPASGYVQGINDLATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKL 311
           AIRHPASGYVQGINDL TPFLV+FLSEYL+GGV+ WS+ DLS +K++++EADCYWCL+KL
Sbjct: 245 AIRHPASGYVQGINDLVTPFLVIFLSEYLDGGVDSWSMDDLSAEKVSDVEADCYWCLTKL 304

Query: 312 LDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQFAFRWFNCLLIREI 371
           LDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEE GLEFLQFAFRW+NCLLIREI
Sbjct: 305 LDGMQDHYTFAQPGIQRLVFKLKELVRRIDEPVSRHMEEHGLEFLQFAFRWYNCLLIREI 364

Query: 372 PFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEELQKLDFQELVMFLQHVPTQNWTH 431
           PF+L+ RLWDTYLAEGD+LPDFLVYI+ASFLLTWS+EL+KLDFQE+VMFLQH+PT NW+ 
Sbjct: 365 PFNLINRLWDTYLAEGDALPDFLVYIYASFLLTWSDELKKLDFQEMVMFLQHLPTHNWSD 424

Query: 432 QELEMVLSRAYIWH 443
           QELEMVLSRAY+WH
Sbjct: 425 QELEMVLSRAYMWH 428

[Close]

BLAST of CmaCh06G016980 vs. TAIR 10
Match: AT1G54250.1 (RNA polymerase Rpb8 )

HSP 1 Score: 213.0 bits (541), Expect = 9.0e-55
Identity = 96/141 (68.09%), Postives = 121/141 (85.82%), Query Frame = 0


Query: 679 LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMALAPT 738
           +LF+DIF +++L+PDGKKFDKVTR++A S   +MFMHLD+NTE+Y L  G+KF++ALAPT
Sbjct: 6   ILFEDIFVVDQLDPDGKKFDKVTRVQATSHNLEMFMHLDVNTEVYPLAVGDKFTLALAPT 65

Query: 739 LNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHVGKAEIDASFGGLLMMLKG 798
           LNLDGTPDTGYF  G +K+LAD+YEY+MHGKL++ISE  G   KAE+  SFGGLLM+LKG
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLLMLLKG 125

Query: 799 DPSHCSKFELDQRLFLLIRKV 820
           DP+H S FELDQRLFLL+RK+
Sbjct: 126 DPAHISHFELDQRLFLLMRKL 146

[Close]

BLAST of CmaCh06G016980 vs. TAIR 10
Match: AT3G59600.1 (RNA polymerase Rpb8 )

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-54
Identity = 94/141 (66.67%), Postives = 122/141 (86.52%), Query Frame = 0


Query: 679 LLFDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINTEIYNLKEGEKFSMALAPT 738
           ++F+DIF +++L+PDGKKFDKVTR+EA+S   +MFMHLD+NTE+Y L  G+KF++A+APT
Sbjct: 6   IMFEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPT 65

Query: 739 LNLDGTPDTGYFLQGNRKSLADRYEYVMHGKLFRISESSGHVGKAEIDASFGGLLMMLKG 798
           LNLDGTPDTGYF  G +K+LAD+YEY+MHGKL++ISE  G   KAE+  SFGGLLM+L+G
Sbjct: 66  LNLDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISERDGKTPKAELYVSFGGLLMLLQG 125

Query: 799 DPSHCSKFELDQRLFLLIRKV 820
           DP+H S FELDQRLFLL+RK+
Sbjct: 126 DPAHISHFELDQRLFLLMRKL 146

[Close]

BLAST of CmaCh06G016980 vs. TAIR 10
Match: AT2G43540.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 27 Blast hits to 27 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 186.8 bits (473), Expect = 6.9e-47
Identity = 95/164 (57.93%), Postives = 121/164 (73.78%), Query Frame = 0


Query: 507 MGISASKRVKNSLSNSPDFDSACDSTFSHCLDLTQHAYAGVFPYQLCTAADHLHRLLTTV 566
           MGIS SKRV   LSNSP+FDSACDS +   L L QHA+AGV PYQL +AA H+HR L+ +
Sbjct: 1   MGISGSKRVTTILSNSPEFDSACDSAYDESLSLAQHAFAGVRPYQLVSAAAHIHRNLSAL 60

Query: 567 RPHPLISKWLPSPPTRLQVDSALQAVNRGDAGREDEETLGPIRFKHWAIELFAEAVVKNV 626
           R  PLI++WL SPP++ QVDSAL+         ++EE LG   FK WA+E+FAEAVV N 
Sbjct: 61  R-FPLITRWLSSPPSQSQVDSALRVTVSRVTAADEEEILGQEEFKKWAVEVFAEAVVGNA 120

Query: 627 SKEVMFRVPVGIAGIAGIGAVTRSGKDLVGSMVAVYALGVATSM 671
            K +  R+P+GI GI GIGAVTRSG++L+G+ + VYA+GVATS+
Sbjct: 121 RKTIASRIPLGIVGIGGIGAVTRSGQNLIGAAIGVYAIGVATSV 163

[Close]

BLAST of CmaCh06G016980 vs. TAIR 10
Match: AT1G04830.2 (Ypt/Rab-GAP domain of gyp1p superfamily protein )

HSP 1 Score: 122.9 bits (307), Expect = 1.2e-27
Identity = 103/374 (27.54%), Postives = 161/374 (43.05%), Query Frame = 0


Query: 123 MGARATDSARVLKFTKLLSGTTIISDKLRELAWSGVP--PYMRPNIWRLLLGYAPPNSDR 182
           +G  A D +R    +  LS   I   +LR LA   +P  P +R  +W+LLLGY PP    
Sbjct: 86  VGPSAEDFSRQAHVSAELSKKVINMKELRSLALQSLPDSPGIRSTVWKLLLGYLPPERSL 145

Query: 183 KEGVLRRKRLEY-------LDSVAQF------------YDIPDTER--------SDD--- 242
               L++KR +Y       L S ++             YD+    R        +D+   
Sbjct: 146 WSTELKQKRSQYKHYKDELLTSPSEITWKMVRSKGFDNYDLKSESRCMLARSRITDEDHP 205

Query: 243 --------------EINMLRQIAVDCPRTVPDVTFFQ-----QAQVQKSLERILYTWAIR 302
                         +   + QI  D  RT PD+ FF          Q+S++ IL  +A  
Sbjct: 206 LSLGKASIWNTYFQDTETIEQIDRDVKRTHPDIPFFSGESSFARSNQESMKNILLVFAKL 265

Query: 303 HPASGYVQGINDLATPFLVVFLSEYLEGGVEKWSISDLSPDKITNIEADCYWCLSKLLDG 362
           +    YVQG+N++  P   VF              +D   D  ++ EAD ++C  +LL G
Sbjct: 266 NQGIRYVQGMNEILAPIFYVFR-------------NDPDEDSSSHAEADAFFCFVELLSG 325

Query: 363 MQDHY----TFAQPGIQRLVFKLKELVRRIDEPVSRHMEEQGLEFLQF-AFRWFNCLLIR 422
            +D Y      +  GI+  + +L +LVR+ DE + RH+E       QF AFRW   LL +
Sbjct: 326 FRDFYCQQLDNSVVGIRSAITRLSQLVRKHDEELWRHLEITTKVNPQFYAFRWITLLLTQ 385

Query: 423 EIPFHLVTRLWDTYLAEGDSLPDFLVYIFASFLLTWSEELQKLDFQELVMFLQHVPTQNW 441
           E  F     +WD  L++ +   + L+ I  + L+     L   DF   +  LQH PT N 
Sbjct: 386 EFSFFDSLHIWDALLSDPEGPLESLLGICCAMLVLVRRRLIAGDFTSNMKLLQHYPTTNI 445

The following BLAST results are available for this feature:

BLAST of CmaCh06G016980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NU19	2.3e-87	43.17	TBC1 domain family member 22B OS=Homo sapiens OX=9606 GN=TBC1D22B PE=1 SV=3	[more]
Q95LL3	3.0e-87	43.17	TBC1 domain family member 22B OS=Macaca fascicularis OX=9541 GN=TBC1D22B PE=2 SV...	[more]
O59737	2.1e-85	44.86	GTPase-activating protein gyp1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]
Q8WUA7	1.4e-84	49.20	TBC1 domain family member 22A OS=Homo sapiens OX=9606 GN=TBC1D22A PE=1 SV=2	[more]
Q95KI1	3.1e-84	48.88	TBC1 domain family member 22A (Fragment) OS=Macaca fascicularis OX=9541 GN=TBC1D...	[more]

BLAST of CmaCh06G016980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30710.1	1.1e-185	74.19	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]
AT1G54250.1	9.0e-55	68.09	RNA polymerase Rpb8	[more]
AT3G59600.1	1.2e-54	66.67	RNA polymerase Rpb8	[more]
AT2G43540.1	6.9e-47	57.93	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT1G04830.2	1.2e-27	27.54	Ypt/Rab-GAP domain of gyp1p superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000195	Rab-GTPase-TBC domain	SMART	SM00164	tbc_4	coord: 154..410 e-value: 8.2E-55 score: 198.1
IPR000195	Rab-GTPase-TBC domain	PFAM	PF00566	RabGAP-TBC	coord: 162..405 e-value: 1.8E-53 score: 181.4
IPR000195	Rab-GTPase-TBC domain	PROSITE	PS50086	TBC_RABGAP	coord: 157..384 score: 34.293522
IPR005570	RNA polymerase, Rpb8	SMART	SM00658	rpol8neu	coord: 677..818 e-value: 5.9E-65 score: 231.8
IPR005570	RNA polymerase, Rpb8	PFAM	PF03870	RNA_pol_Rpb8	coord: 682..818 e-value: 1.2E-48 score: 164.8
None	No IPR available	GENE3D	1.10.472.80		coord: 319..450 e-value: 7.3E-44 score: 150.8
None	No IPR available	GENE3D	1.10.8.270	putative rabgap domain of human tbc1 domain family member 14 like domains	coord: 196..318 e-value: 1.5E-24 score: 88.1
None	No IPR available	GENE3D	1.10.10.750		coord: 135..185 e-value: 7.1E-6 score: 27.6
None	No IPR available	GENE3D	2.40.50.140		coord: 681..819 e-value: 2.8E-54 score: 185.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	PANTHER	PTHR22957	TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN	coord: 11..443
None	No IPR available	PANTHER	PTHR22957:SF581	GTPASE-ACTIVATING PROTEIN GYP1-LIKE	coord: 11..443
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 136..344
IPR035969	Rab-GTPase-TBC domain superfamily	SUPERFAMILY	47923	Ypt/Rab-GAP domain of gyp1p	coord: 320..444
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 679..818

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016980.1	CmaCh06G016980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated