CmaCh06G016910 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G016910
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Descriptionstress-associated endoplasmic reticulum protein 2-like
LocationCma_Chr06: 10403992 .. 10405700 (+)
RNA-Seq ExpressionCmaCh06G016910
SyntenyCmaCh06G016910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGACGCGGACATAAGAATTAGTCAACGTGGCGTGTCATCAACCAATTATTGTTTGCCACGTATGCTAGTATACGTGTTATCACTACTCGTTGAATTTCAAATTTGCGAGCTGCAAACAGCCAGGAAACAAATGAAATCCTGATTTGTTCATAGATAAATGTGAAGAATTCGCCGCGTTTTCTAGAACTCGCCTCCATTTTTCTTCTCCATTTCGTTTCCTCCTCTCAGATCTCCCTCTCTCAAATGGTAATTTACCTTTCTTCTTTAATCCATTCTTCTTCCTTACCTTCGATTCTTTTCTCTCTAGGGTTTTGATCTGTGGTTTGATGTTTGGATTTTGTTTCCTGATTTGATGTGATTTTCGCTTTCGTTTTCGATTTATGATTTTGATTTTATGGGAATTTCAGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGCCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATGTGAGTTTTTCCTTGCTCGCTCTTCGAGATTCTGATGGTTGAATTCCTCTTTCCTCTCTTTTATCTGCTTGTGCTTACATTTTGGCATATTCTGGTTTTCTTATCATGCCATTCGAGTTTCTGCGTGGTTGTTTCTAAAAATATGTTTAAGAATCAAATTTACTTTAATCTAACCGAGAATAACATGATATCTAAGTCCGCTCTTCAAATTCTTATGAAGACCCAAAATGAAAGATCAGGAATATATGCTGTAACGTTTGTTCGTAATTGTGGGTCGACGGAATCATGGTAGCTAGCAATCCATCCATTTTTGCTCGGATTTTCATGATATGTCTTTTTGAAGGGGGCGTAGAATAAGGCCAAAATTGCCAAGGATTCAGTTTTATTGACATATTGAAAATTTGAATGATTGTCGATGATGGCTGATGAGGTTTCCTCCCAGCAGAAGCTCCTGTGTCTTCATTTTTTATCAATGAATTGTATACTTCGCTAATGATCTTTTGTTCCACTGTTTGAAATGGGCAGCTCTGTTTCAGATAATCAGGACGGCAACCGGTGGAGGAATGGCTTGACCCATCTTCAGTTCTGAGGGGTAGCAGAAGGCAGGAAATGAGGTTAAAATTTCTTGTGTGATTTGTTATACCTCTCTGTTTTGTCTGTGGTACCCATTAGGAGGAGAAGCTTGTTGGTATAGAGAAAGTTAAAGCCATTTATGGTCATCCTGTGAAGTACTTATTATGAAAGTAATTTAAATAACAGTGCACACATCTAAGTGCTATTCTATCCTAATTGTTTATTGTTCATTTCATGATCTCATTTAACTCTTAAGGTGCACTTCTTTTTGAATCTGAATTTGGAACAACTTTTTGAACACCCGATAAGCTCTCATTCTCAATGTAGTTTTCGTAGTCTAAACTGACGCACCACAAAATGAAAAATTAGGTCTTTTTGAAGTAATTTTGAACCACAAGAGATAGGCAGACGCCCTTAATACATGCCTGCATCTCTGAACTAAGCGAGCCATACAGTAAAATGTTATGATTCATTGTGTTGGTCATCCAGCCCTTTGGCGCCGAGCTCTCACCACAGCATTTTTGTGAGATTTACTTGATGGTCTTCAAGTGGTTATTAGTTTCACC

mRNA sequence

ATGATAAATGTGAAGAATTCGCCGCGTTTTCTAGAACTCGCCTCCATTTTTCTTCTCCATTTCGTTTCCTCCTCTCAGATCTCCCTCTCTCAAATGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGCCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATCTCTGTTTCAGATAATCAGGACGGCAACCGGTGGAGGAATGGCTTGACCCATCTTCAGTTCTGAGGGGTAGCAGAAGGCAGGAAATGAGGTTAAAATTTCTTGTGTGATTTGTTATACCTCTCTGTTTTGTCTGTGGTACCCATTAGGAGGAGAAGCTTGTTGGTATAGAGAAAGTTAAAGCCATTTATGGTCATCCTGTGAAGTACTTATTATGAAAGTAATTTAAATAACAGTGCACACATCTAAGTGCTATTCTATCCTAATTGTTTATTGTTCATTTCATGATCTCATTTAACTCTTAAGGTGCACTTCTTTTTGAATCTGAATTTGGAACAACTTTTTGAACACCCGATAAGCTCTCATTCTCAATGTAGTTTTCGTAGTCTAAACTGACGCACCACAAAATGAAAAATTAGGTCTTTTTGAAGTAATTTTGAACCACAAGAGATAGGCAGACGCCCTTAATACATGCCTGCATCTCTGAACTAAGCGAGCCATACAGTAAAATGTTATGATTCATTGTGTTGGTCATCCAGCCCTTTGGCGCCGAGCTCTCACCACAGCATTTTTGTGAGATTTACTTGATGGTCTTCAAGTGGTTATTAGTTTCACC

Coding sequence (CDS)

ATGATAAATGTGAAGAATTCGCCGCGTTTTCTAGAACTCGCCTCCATTTTTCTTCTCCATTTCGTTTCCTCCTCTCAGATCTCCCTCTCTCAAATGACGACATCACGGCGTTTTGCGGATAGGAAGGTTGAGAGGTTCGAGAAGAACATTTTGAAGAGAGGGGCCGTGCCCGAGACTGCTACGAAGAAGGGAAAGGACTACCCCGTTGGCCCTCTTCTTCTTGGATTCTTCGTTTTTGTCGTCATTGGATCATCTCTGTTTCAGATAATCAGGACGGCAACCGGTGGAGGAATGGCTTGA

Protein sequence

MINVKNSPRFLELASIFLLHFVSSSQISLSQMTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRTATGGGMA
Homology
[Close]
BLAST of CmaCh06G016910 vs. ExPASy Swiss-Prot
Match: Q3T073 (Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-07
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 44 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRTATGG 97
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]
BLAST of CmaCh06G016910 vs. ExPASy Swiss-Prot
Match: Q8N6R1 (Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SERP2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-07
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 44 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRTATGG 97
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]
BLAST of CmaCh06G016910 vs. ExPASy Swiss-Prot
Match: Q6TAW2 (Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Serp2 PE=3 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 7.0e-07
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 0 

Query: 44 ERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRTATGG 97
          E+  KNI +RG V +T   + + YPVGP LL  FVFVV GS++FQII++   G
Sbjct: 12 EKHSKNITQRGNVAKTLRPQEEKYPVGPWLLALFVFVVCGSAIFQIIQSIRMG 64

[Close]
BLAST of CmaCh06G016910 vs. ExPASy Swiss-Prot
Match: Q5REZ1 (Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii OX=9601 GN=SERP1 PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 0 

Query: 44 ERFEKNILKRGAVPETA-TKKGKDYPVGPLLLGFFVFVVIGSSLFQIIRTATGG 97
          E+  KNI +RG V +T+    G+   VGP LL  F+FVV GS++FQII++   G
Sbjct: 12 EKHSKNITQRGNVAKTSRNAPGEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65

[Close]
BLAST of CmaCh06G016910 vs. ExPASy Swiss-Prot
Match: Q3ZBR1 (Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus OX=9913 GN=SERP1 PE=3 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 7.2e-04
Identity = 24/54 (44.44%), Postives = 35/54 (64.81%), Query Frame = 0 

Query: 44 ERFEKNILKRGAVPETATKKGKD-YPVGPLLLGFFVFVVIGSSLFQIIRTATGG 97
          E+  KNI +RG V +T+    ++   VGP LL  F+FVV GS++FQII++   G
Sbjct: 12 EKHSKNITQRGNVAKTSRNAPEEKASVGPWLLALFIFVVCGSAIFQIIQSIRMG 65

[Close]
BLAST of CmaCh06G016910 vs. TAIR 10
Match: AT1G27350.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-28
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 32  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 91
           MTTS+R ADRK+E+F+KNILKRG VPET TKKGKDYPVGP+LLGFFVFVVIGSSLFQIIR
Sbjct: 1   MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 92  TATGGGMA 100
           TAT GGMA
Sbjct: 61  TATSGGMA 68

[Close]
BLAST of CmaCh06G016910 vs. TAIR 10
Match: AT1G27330.1 (Ribosome associated membrane protein RAMP4 )

HSP 1 Score: 122.5 bits (306), Expect = 1.9e-28
Identity = 59/68 (86.76%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 32  MTTSRRFADRKVERFEKNILKRGAVPETATKKGKDYPVGPLLLGFFVFVVIGSSLFQIIR 91
           MTTS+R ADRK+E+F+KNILKRG VPET TKKGKDYPVGP+LLGFFVFVVIGSSLFQIIR
Sbjct: 1   MTTSKRLADRKIEKFDKNILKRGFVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQIIR 60

Query: 92  TATGGGMA 100
           TAT GGMA
Sbjct: 61  TATSGGMA 68

The following BLAST results are available for this feature:
BLAST of CmaCh06G016910 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q3T0737.0e-0750.94Stress-associated endoplasmic reticulum protein 2 OS=Bos taurus OX=9913 GN=SERP2... [more]
Q8N6R17.0e-0750.94Stress-associated endoplasmic reticulum protein 2 OS=Homo sapiens OX=9606 GN=SER... [more]
Q6TAW27.0e-0750.94Stress-associated endoplasmic reticulum protein 2 OS=Mus musculus OX=10090 GN=Se... [more]
Q5REZ11.9e-0446.30Stress-associated endoplasmic reticulum protein 1 OS=Pongo abelii OX=9601 GN=SER... [more]
Q3ZBR17.2e-0444.44Stress-associated endoplasmic reticulum protein 1 OS=Bos taurus OX=9913 GN=SERP1... [more]
BLAST of CmaCh06G016910 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G27350.11.9e-2886.76Ribosome associated membrane protein RAMP4 [more]
AT1G27330.11.9e-2886.76Ribosome associated membrane protein RAMP4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010580Stress-associated endoplasmic reticulum proteinPFAMPF06624RAMP4coord: 36..92
e-value: 2.8E-24
score: 84.8
IPR010580Stress-associated endoplasmic reticulum proteinPANTHERPTHR15601STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEIN SERP1/RAMP4coord: 29..99
NoneNo IPR availablePANTHERPTHR15601:SF26STRESS ASSOCIATED ENDOPLASMIC RETICULUM PROTEINcoord: 29..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G016910.1CmaCh06G016910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030968 endoplasmic reticulum unfolded protein response
biological_process GO:0006486 protein glycosylation
biological_process GO:0015031 protein transport
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane