CmaCh06G016830 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016830
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	transcription factor bHLH153-like isoform X1
Location	Cma_Chr06: 10371365 .. 10375138 (-)
RNA-Seq Expression	CmaCh06G016830
Synteny	CmaCh06G016830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAGTTCCCGGTGTGTGTTTCGTTGATTTCTCATTCTCTTTACTGTTATTGTTCTTCCTTTTTTTTCAGGCTGCTTCTTGAACTGTGATAGATTACTGTATTTTGTCATCTCGTTCATGAGTAGTCAATACTTACACCAACTTTTGTTTTTATCTTCTTTTTATCGGTTTCCATGCTAAACTGTGTAAGATTGTACTATTGATTAGTTGATTTTTGTTAATTGTGTTATTAGTTACAGTGTTTATCTTAATCTGGTTCTGGTATTTGGTTTTCTGCCTTTGATTGGTGTGTTCAAGATATTAAAAGGAAGGGGTAGGATAATTCTGTACGCAAATTACATATTCTCCTAGTTTAATCCCTACGTGGTGTGGATTTGTTTATCTGTATTTGTTTTAAAATAGAAAAAAAAAAAAATTGTTCATCTGGGCCCACCCTGTCTCATTTATAACATCTGTTTGGTTTAAAATACCCATTCTGGATTCCCATTACCCAACCCATTACTTCTACTTTTCTCAAAAAGTAGAAAACTTACAGGTGTTCTCCTGTTTCTTATTCCAGTGTCTCGTTAGTTGTAACTTTGTGTGTGTGTTCATCTCCTGAGTTGTCTTTTGCGATGTTAGGTTCATTGTATTACCCTTTCTACTGGCCGAAACAGCCAAATTTTGATATAAAGACACAGCTCTTAACTGTTTTTTTGGTCAAGATGGTCAGTGTGAGAAGGAACATCCAGATCGTTTTAATTTGGGCATGAATTGATGAGAGATGTTTGTATTTGTTTATTTTGTGCATGTATATTGCTGTCATCGTTATTAACCTATTAATCTCAATATAATAACCCTCTGACCCTACTCTTTTCATATTATTATTCTTAATTGTGCTGATTGTTTTCGGTAATATATATCGGTGTTCGTCATTAGACTATGGAACTTCTGTCTACTTGTATTCCTTTTGTCCTCTAGTAGTCTGTATTATTATATAGTGGTTGTTAATATAGTAGATCAAATTAATCAATATTATATTGTTAATAATTTAATCATCTAATGTGGTATACTTATCTGCATGCTATCTGAAGTTCTGTACCAAAGTAATAATGTTTTGTCCGATCTATGAGGATGCTATTATTTCAAGGAATTTAATTAAAGATTATGAAGTTCGTGGGGTCGTTATTTCTTGGTCGTAGAATTCATTTGGTTTTAAAAGTCAAACAATTTGTGTTCATGTGTATTCACATGACAGGCATTTAAAAATATGCCTGTCTTGAACCCGTGGGAGATCTGTATACTTTTCAGATTTTCTCAGTTGACTTTCGTTGTTGTATGAGTTTTTTTTATCGATCGAATTTCTTATTATTATATCTTTGCGAGTTCTTCCTCTAAATAAAGTTTACTCTATTTTACATGAAATATAGGATTTTGACGCTTGCATTGGATGTTTGTTGCCTATCTGCTGTGCATCTTGATTGATTGAATTTGATCTCTGTCCAGGCAGAAGTGGTGGAGGTAGAAACAATGATGGAACAGAAAAGTAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGCGACGCAAGGCAGATTTTTCCATCTCCGCTAAGGTTTCTGTTATTGGTTCAACTTCACATTGCAGCATATTGAAGATTAAGATTTCTATCATATTAATAACTAATCATGCTTAGTAATATATAAAGTTTAAGTTTTGGGTCGTCCATTAGACAAGATTTGGTGGCCTTCTTATCTCATTTTGGGTGGTCCAATTGTATTTCTTTATTTTCCACTTGATTAATCCTCATTTCGTCCTGTTTTGTTCTTTACGAAGTACTAATATTCTCTTTCTATAGGAAAAGAAAGACAAACTGGGCGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATTCGGAAAGGTCTGTTTGGAACAAATCAAATAACCATAAAAATTGACCTTTTATATTGAAACTTCAGGGTTCATATGACCTGGGCCAAATTTTATTTTGGCTCTTGAATTCCATAACCTATTTTTTGTGATTTTGCTATTAGTATTAAAATCATTGCCCTGTTTGAATTCAAGTTATAAAATTCCACTGCAGACAGATACGGCATCTGTTCTTCTTGAGGCCATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTATGCTCTTCTTGCCTAAAGATTGTGGTTCCTTTTGAATTCTGATTTCGGTACCGAATACGAGTGGCTATCATGCCATGCATATAGCTTTTCTGTGACCTGTATTATACTTCTTTCCTCCATGAATCCTTCTAATTGGTGGTTCAGGGAATATATTTCCTTTTCACATCCATATTTTTCCTGACCTTTAGTGCTCTGAGCATCAATTAGTGATTATAAATTCATTTGATATTTATGGTGTAATTTGATTCCAGAATGGGCTATATCTCTCTCTCACTGATTTTGTTTTGGATTATTCTTCTATCCCTCTTTTAGTTTCTAGGTATTTAGTCATTGTGTTCCTTTCTTCCGTCATTTCCTCTCTCTCGTCAGCAATGGAACATAATCTACAGGATCGAATTAGTTTTGGTTCTCTCTTCTTATAGCCTATGGTTGAGAACATAAAGAGGATCCGTTGTATATTCCCTTATATTATTTTGGTGTGCTTTCAGGTATTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGTGAGCCTATGCTGGACCTTTTGTTTCATGATCTGACAAAAGGCGTTCCTTAAAAACACTTGTCTGAGACGGAAAAAAAAAACTAATGTGAACAAAGTGTGTTCCTTCAAACCTCGATATTTGTCTTGCAACTAGAAAATTTTAATCTTCAAACTTCTGGGGAGGATGAAATTTAGTGACTTTGAACGTTTTTACTGCTTCATCTATTTAATTCAATGCAAAACCTGTCTGAATATTATTGCAACGTTTATACTCGTTTTTGTTAGGAGATGGAGTTGCCATACAACCACGGGCTGAGGAACAAAGGTTTATGTCTTGTACCCATCTCTTGTACTGCAGGAGTTGCACGTAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGACCATCTCACCATTCAATTGACCACAAACCAATGCTCCGCATCCAAATGATTCTGGAGTTGCTACATACGGTTGGTAAAAAAGGTAACTACTTATCTTCATATCTAATTTATAACAATTTTCCCTCTGAAGTAGCTGAATTGTATCAAATAATTTAGATGGTGCTTGGAAACTGTAATGAATTTGTTACGAAACGAGTAGTCGAATCTTCGGATTCCAAGCTCTGAATCGCCACACCATTCTAGTTATCACTGGTGAGGGGCATAGTTTATATCGCATAAGTGTATTTGGTTGTATTAAATGGTGCAAATATGTATATTGTAAACGAGTTGTATGATGATCCTAAATCGGAAATTCATGGTAGAGTAGCAATTTGTTACCTGCCTAGAACTAGATAGGCACCAATCATTGAAAGCCCGCTACCATGCTCACAAATTCTTGGTACTTCAGGAAATTGTTCTTCTTCACCTTGTGACGCACTCTTGAATTTGTGAAAGTTGGAAGTCCTTGGGAACATATTCAAGGAGTCTCATGCCAATGTCTTGAATTTGTGCGTCAAGGGAAGATTTGTTCTGATAATACTTTGATCAAAGGTTGTGTGGATTGAGGAAAATTATGAATTTAATTGGTGG

mRNA sequence

ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAGTTCCCGGCAGAAGTGGTGGAGGTAGAAACAATGATGGAACAGAAAAGTAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGCGACGCAAGGCAGATTTTTCCATCTCCGCTAAGGAAAAGAAAGACAAACTGGGCGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATTCGGAAAGACAGATACGGCATCTGTTCTTCTTGAGGCCATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTATTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGATGGAGTTGCCATACAACCACGGGCTGAGGAACAAAGGTTTATGTCTTGTACCCATCTCTTGTACTGCAGGAGTTGCACGTAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGACCATCTCACCATTCAATTGACCACAAACCAATGCTCCGCATCCAAATGATTCTGGAGTTGCTACATACGGTTGGTAAAAAAGGTAACTACTTATCTTCATATCTAATTTATAACAATTTTCCCTCTGAAGTAGCTGAATTGTATCAAATAATTTAGATGGTGCTTGGAAACTGTAATGAATTTGTTACGAAACGAGTAGTCGAATCTTCGGATTCCAAGCTCTGAATCGCCACACCATTCTAGTTATCACTGGTGAGGGGCATAGTTTATATCGCATAAGTGTATTTGGTTGTATTAAATGGTGCAAATATGTATATTGTAAACGAGTTGTATGATGATCCTAAATCGGAAATTCATGGTAGAGTAGCAATTTGTTACCTGCCTAGAACTAGATAGGCACCAATCATTGAAAGCCCGCTACCATGCTCACAAATTCTTGGTACTTCAGGAAATTGTTCTTCTTCACCTTGTGACGCACTCTTGAATTTGTGAAAGTTGGAAGTCCTTGGGAACATATTCAAGGAGTCTCATGCCAATGTCTTGAATTTGTGCGTCAAGGGAAGATTTGTTCTGATAATACTTTGATCAAAGGTTGTGTGGATTGAGGAAAATTATGAATTTAATTGGTGG

Coding sequence (CDS)

ATGATTGCGAGCTCTCTTTGCAATGCTTCCGCTAAGTTCCCGGCAGAAGTGGTGGAGGTAGAAACAATGATGGAACAGAAAAGTAACCTATGCTCTGTTGATGAGAGCAGTCTCACTTCTCTTACATCCAAGCGACGCAAGGCAGATTTTTCCATCTCCGCTAAGGAAAAGAAAGACAAACTGGGCGAACGAATTATGGCCTTGCAACAACTTGTTTCACCATTCGGAAAGACAGATACGGCATCTGTTCTTCTTGAGGCCATGGAATATATTCAATTCCTTCACGAGCAAGTCAAGGTATTGAGTGCTCCATATCTCCAAAGCACACCCACTGTTCAGTTGCAGGAGATGGAGTTGCCATACAACCACGGGCTGAGGAACAAAGGTTTATGTCTTGTACCCATCTCTTGTACTGCAGGAGTTGCACGTAGCAACGGTGCAGATATTTGGGCTCCTGTGAAGACAACCTCCCCCAAATTTGAGAAGACCATCTCACCATTCAATTGA

Protein sequence

MIASSLCNASAKFPAEVVEVETMMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVARSNGADIWAPVKTTSPKFEKTISPFN

Homology

[Close]

BLAST of CmaCh06G016830 vs. ExPASy Swiss-Prot
Match: Q7XJU2 (Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.0e-42
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 23  MMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTAS 82
           MME K N+CS+ ESS+     KR K+D S S+KE+KDK+GERI ALQQ+VSP+GKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVA 142
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E    + LRN+GLCLVP+  T GVA
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE---QYSLRNRGLCLVPMENTVGVA 129

Query: 143 RSNGADIWAPVKT-TSPKFEKTI-SPF 168
           +SNGADIWAPVKT  SP F  T  SPF
Sbjct: 130 QSNGADIWAPVKTPLSPAFSVTSQSPF 148

[Close]

BLAST of CmaCh06G016830 vs. ExPASy Swiss-Prot
Match: Q7XJU1 (Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 5.8e-38
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 0


Query: 21  ETMMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDT 80
           E MME K N+ S++++ +     + + +D S S+KE+KDKL ERI ALQQLVSP+GKTDT
Sbjct: 9   EMMMETKRNVYSLEDNKI----KRHKSSDLSFSSKERKDKLAERISALQQLVSPYGKTDT 68

Query: 81  ASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAG 140
           ASVLLE M+YIQFL EQVKVLSAPYLQ+TP+   +E+E    + LR+KGLCLVP+  T+ 
Sbjct: 69  ASVLLEGMQYIQFLQEQVKVLSAPYLQATPSTTEEEVE---EYSLRSKGLCLVPLEYTSE 128

Query: 141 VARSNGADIWAPVKTTSPKFEKTISPFN 169
           VA++NGADIWAPVKT +      +S  N
Sbjct: 129 VAQTNGADIWAPVKTPTSSHAFNLSSSN 149

[Close]

BLAST of CmaCh06G016830 vs. ExPASy Swiss-Prot
Match: Q8GXT3 (Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-22
Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 0


Query: 18  VEVETMMEQKSNLCSVDESSLTSL---------TSKRRKADFS--ISAKEKKDKLGERIM 77
           +  ++  EQ  N+  + +SS   +          +KR K++ +    A ++K+K+G+RI 
Sbjct: 296 IHPQSFDEQPKNISEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIA 355

Query: 78  ALQQLVSPFGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQ------EMELP 137
           ALQQLVSPFGKTD ASVL EA+EYI+FLH+QV  LS PY++S  ++Q Q      E+E+ 
Sbjct: 356 ALQQLVSPFGKTDAASVLSEAIEYIKFLHQQVSALSNPYMKSGASLQHQQSDHSTELEVS 415

Query: 138 YNHGLRNKGLCLVPISCTAGVARSNGADIWAP 153
               LR++GLCLVP+S T  V      D W P
Sbjct: 416 EEPDLRSRGLCLVPVSSTFPVTHDTTVDFWTP 447

[Close]

BLAST of CmaCh06G016830 vs. ExPASy Swiss-Prot
Match: Q9LT67 (Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.6e-22
Identity = 65/133 (48.87%), Postives = 83/133 (62.41%), Query Frame = 0


Query: 34  DESSLTSLTSKRRKADFSIS-AKEKKDKLGERIMALQQLVSPFGKTDTASVLLEAMEYIQ 93
           D++       KR +   S+  AK +K++LGERI ALQQLVSP+GKTD ASVL EAM YI+
Sbjct: 132 DQNRKPGKKGKRNQEKSSVGIAKVRKERLGERIAALQQLVSPYGKTDAASVLHEAMGYIK 191

Query: 94  FLHEQVKVLSAPYLQSTP----TVQLQEMELPYNHGLRNKGLCLVPISCTAGVARSNGAD 153
           FL +Q++VL +PYL +       V    M       LR++GLCLVP+S T  V  SNGAD
Sbjct: 192 FLQDQIQVLCSPYLINHSLDGGVVTGDVMAAMKAKDLRSRGLCLVPVSSTVHVENSNGAD 251

Query: 154 IWAPV---KTTSP 159
            W+P     TTSP
Sbjct: 252 FWSPATMGHTTSP 264

[Close]

BLAST of CmaCh06G016830 vs. ExPASy Swiss-Prot
Match: Q94JL3 (Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-21
Identity = 57/106 (53.77%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 55  KEKKDKLGERIMALQQLVSPFGKTDTASVLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQL 114
           K +K+ L ++I +LQQLVSPFGKTDTASVL EA+EYI+FLH+QV VLS PY++   + Q 
Sbjct: 280 KVRKENLRDQITSLQQLVSPFGKTDTASVLQEAIEYIKFLHDQVTVLSTPYMKQGASNQQ 339

Query: 115 QE--------MELPYNHGLRNKGLCLVPISCTAGVARSNGADIWAP 153
           Q+         +   NH LR  GLCLVPIS T  VA    AD W P
Sbjct: 340 QQQISGKSKSQDENENHELRGHGLCLVPISSTFPVANETTADFWTP 385

[Close]

BLAST of CmaCh06G016830 vs. TAIR 10
Match: AT1G05710.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-44
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 23  MMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTAS 82
           MME K N+CS+ ESS+     KR K+D S S+KE+KDK+GERI ALQQ+VSP+GKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVA 142
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E    + LRN+GLCLVP+  T GVA
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE---QYSLRNRGLCLVPMENTVGVA 129

Query: 143 RSNGADIWAPVKT-TSPKFEKTI-SPF 168
           +SNGADIWAPVKT  SP F  T  SPF
Sbjct: 130 QSNGADIWAPVKTPLSPAFSVTSQSPF 148

[Close]

BLAST of CmaCh06G016830 vs. TAIR 10
Match: AT1G05710.4 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-44
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 23  MMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTAS 82
           MME K N+CS+ ESS+     KR K+D S S+KE+KDK+GERI ALQQ+VSP+GKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVA 142
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E    + LRN+GLCLVP+  T GVA
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE---QYSLRNRGLCLVPMENTVGVA 129

Query: 143 RSNGADIWAPVKT-TSPKFEKTI-SPF 168
           +SNGADIWAPVKT  SP F  T  SPF
Sbjct: 130 QSNGADIWAPVKTPLSPAFSVTSQSPF 148

[Close]

BLAST of CmaCh06G016830 vs. TAIR 10
Match: AT1G05710.3 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-44
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 23  MMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTAS 82
           MME K N+CS+ ESS+     KR K+D S S+KE+KDK+GERI ALQQ+VSP+GKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVA 142
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E    + LRN+GLCLVP+  T GVA
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE---QYSLRNRGLCLVPMENTVGVA 129

Query: 143 RSNGADIWAPVKT-TSPKFEKTI-SPF 168
           +SNGADIWAPVKT  SP F  T  SPF
Sbjct: 130 QSNGADIWAPVKTPLSPAFSVTSQSPF 148

[Close]

BLAST of CmaCh06G016830 vs. TAIR 10
Match: AT1G05710.5 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.3e-44
Identity = 96/147 (65.31%), Postives = 114/147 (77.55%), Query Frame = 0


Query: 23  MMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTAS 82
           MME K N+CS+ ESS+     KR K+D S S+KE+KDK+GERI ALQQ+VSP+GKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVKVLSAPYLQSTPTVQLQEMELPYNHGLRNKGLCLVPISCTAGVA 142
           VLL+AM YI+FLHEQVKVLSAPYLQ+ P    +E+E    + LRN+GLCLVP+  T GVA
Sbjct: 70  VLLDAMHYIEFLHEQVKVLSAPYLQTVPDATQEELE---QYSLRNRGLCLVPMENTVGVA 129

Query: 143 RSNGADIWAPVKT-TSPKFEKTI-SPF 168
           +SNGADIWAPVKT  SP F  T  SPF
Sbjct: 130 QSNGADIWAPVKTPLSPAFSVTSQSPF 148

[Close]

BLAST of CmaCh06G016830 vs. TAIR 10
Match: AT1G05710.2 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-40
Identity = 96/169 (56.80%), Postives = 114/169 (67.46%), Query Frame = 0


Query: 23  MMEQKSNLCSVDESSLTSLTSKRRKADFSISAKEKKDKLGERIMALQQLVSPFGKTDTAS 82
           MME K N+CS+ ESS+     KR K+D S S+KE+KDK+GERI ALQQ+VSP+GKTDTAS
Sbjct: 10  MMENKRNVCSLGESSI-----KRHKSDLSFSSKERKDKVGERISALQQIVSPYGKTDTAS 69

Query: 83  VLLEAMEYIQFLHEQVK----------------------VLSAPYLQSTPTVQLQEMELP 142
           VLL+AM YI+FLHEQVK                      VLSAPYLQ+ P    +E+E  
Sbjct: 70  VLLDAMHYIEFLHEQVKVCSSIPSMIHSSLSEFPCSFVQVLSAPYLQTVPDATQEELE-- 129

Query: 143 YNHGLRNKGLCLVPISCTAGVARSNGADIWAPVKT-TSPKFEKTI-SPF 168
             + LRN+GLCLVP+  T GVA+SNGADIWAPVKT  SP F  T  SPF
Sbjct: 130 -QYSLRNRGLCLVPMENTVGVAQSNGADIWAPVKTPLSPAFSVTSQSPF 170

The following BLAST results are available for this feature:

BLAST of CmaCh06G016830 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XJU2	1.0e-42	65.31	Transcription factor bHLH153 OS=Arabidopsis thaliana OX=3702 GN=BHLH153 PE=1 SV=...	[more]
Q7XJU1	5.8e-38	57.43	Transcription factor bHLH154 OS=Arabidopsis thaliana OX=3702 GN=BHLH154 PE=1 SV=...	[more]
Q8GXT3	2.0e-22	42.11	Transcription factor bHLH123 OS=Arabidopsis thaliana OX=3702 GN=BHLH123 PE=1 SV=...	[more]
Q9LT67	7.6e-22	48.87	Transcription factor bHLH113 OS=Arabidopsis thaliana OX=3702 GN=BHLH113 PE=2 SV=...	[more]
Q94JL3	1.7e-21	53.77	Transcription factor bHLH112 OS=Arabidopsis thaliana OX=3702 GN=BHLH112 PE=1 SV=...	[more]

BLAST of CmaCh06G016830 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05710.1	7.3e-44	65.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.4	7.3e-44	65.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.3	7.3e-44	65.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.5	7.3e-44	65.31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G05710.2	4.9e-40	56.80	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 53..100 e-value: 2.2E-4 score: 30.6
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 45..94 score: 11.902781
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 41..117 e-value: 1.5E-7 score: 33.4
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 43..109
None	No IPR available	PANTHER	PTHR16223:SF224	TRANSCRIPTION FACTOR BHLH113-LIKE ISOFORM X1	coord: 17..152
None	No IPR available	PANTHER	PTHR16223	TRANSCRIPTION FACTOR BHLH83-RELATED	coord: 17..152
None	No IPR available	CDD	cd11393	bHLH_AtbHLH_like	coord: 51..102 e-value: 1.02439E-22 score: 83.3847

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016830.1	CmaCh06G016830.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding