CmaCh06G016770 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016770
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Glycerophosphodiester phosphodiesterase
Location	Cma_Chr06: 10340070 .. 10342954 (+)
RNA-Seq Expression	CmaCh06G016770
Synteny	CmaCh06G016770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACCTATAATCTAGCAGCCTTTGCCCGAAGCTTCAGGATTTCTTCCATTTTCTTCCCTTTTTCTTTTCCTCCATTTCCCCCATTTTTTCAATTTTTCTTGCATCATGTTCGTTAGTACACACGTCAATTTTCGTCGTCGCTCAGGAGTCGCAGTACGAAGAACCTGGAAATCTCCTTCTTGTCGGTTCTAGCAATTCTTTCCCTTTTTCTGCGGTGAATTGTATGATGCTGGCACTTGAATCTGCCGTCAGAATCTCCCATGTCTCCTCCACCGATCATGTCCTCAATGTCACCGCATTCGCCTTTGTCCCAAGGCCGAGGTCTGTGCTTCAATCTTTTGATCGATTTCTTTTGGAATCGTTTGATTTCATGCATTTTGTTTGTTTACATTTTGTTCTCTGTTTTAATTTAGAGGCTAACATTTTGGAAGATGGAAATGATCGCGCATGTCGATCGTCGAAATTCCTTGTGATTGGTCATAGAGGATTCGGGATGAACATCTTGCAATCCTCTGATTCGCGTTTTAAATTAATGAAGGAGAATTCCATTCCGTCCTTCATGGCGGCTACTAGGTTTCCAGTCGATTTCATCGAATTCGACGTTCAGGTGAGAGAAATTTCCATTGTTTCGCATGTTCGATCTTTTGGACCTCGTTGCTTTGTGCGATTTCTTATGCATGTTGATTTACTCCGCAAATATTCTAAATAGAAACTGGTTATATGTATTTTACGTGTTCTGTTCCCACTGTCTTCTAATATGATAATTGAAACTTCAAATTGTTGCTTGTCGTCTAATGGATGGAGATGGTTCTTGTGAATTTTTCATCGATCACTTCTCTTAATTTGCTTTATCGATTTGTCGTCTAATGGATGGAGATGGTTCTTGTGAATGCTTCTTTTGTTCTTTTTTTCTTTTTCCTCTTTCCATCCTTGCCTTTATAAGGAAGAACTTTTTAAGAGCCTGTTTTTGTAGGTAACCAAAGATGGCTGCCCGGTCGTTTTCCATGACTGTTTGATTCTTACTGAGGAAAAGGTTAGGCCTTCCTTTTTGACCCAAATCATTGGAACTTGTATCTTCGCTATGGATTTTGGTATGTTTTCCTTTTTGGCTTCTCTCCGTAATTTATTGAATTGTAAATGACTATTGGTTTCAGGGTGCTATTGTGGAGAAAAGAGTTACAGAGCTCACGCTGGAAGAATTTCTTTCATATGGGCCACAAGATGATCCTGGGAAGGTAAGAGATTCCATCTCTTCTTCCTAAACCGTTAGGGTGTTTGGAAAATGAAAAAGATAAATAGCTAAATCATGCAATTTTGTTGTGTTGATGGGCATTCAGATGGGCAAGCCTCTATTTAGAAGGACCATAGATGGGGGAATATTTGAGTGGACAGTTGAAAGTGATGCGCCGCTATGCACACTGCGAGAAGTTTTTGCGAAAATTGATCATTCGATTGGTTTCAATATAGAATTGAAGTTCGATGATCTGGTGGTTTACAAAGAGGAGCAACTTGCTCATGTTCTCCAACAAATCTTAAAGGTACTTGTTTCTGCCAAACATGAAAACTGAGATTGTGTGTGATTATGCTTACCAAAAGAAAATCTTGAACAGGTGGTGAAAGAGAATGCCAGGGACAGACCTATTATATTTTCAAGTTTTATACCAGATGCTGCTCATTTAGTTAAGAAACTTCAGAGCACCTACTCTGTAAGATCACTTCCTCACCATATTGTTTCATTTGCATTTATTCCTTCAAATTCAATCCTGAATTGATGTTTAGCAACTGGGATCCTTTTAAAGGTTATATCCATGTGACAGACTCTACTTTAATTGCAATGGTGAATATACTTCAAATGTGTTTTTACCAATAATAACAAAATGCTGGTTCACCCAATTAGCTTCTAAGAAGATCTTTGCCTTGACATCAAGCAGCTGAGTGCTTAGATATCTCTTTATATCTATGTAACCTGACCAGGTATTCTTCCTGACCAACGGAGGATCCAAACTTTACCCTGATGTTAGAAGGAACTCGTTGGAGGAAGCCATTAACGTGTGTATGACAGGTTGTTTGCACGGTATCGTTGCAGAAGTTTCATCGATTTTGAGAAATCCTGCAGCAGTCAATAGAATCAGAAATTCAGGATTCTCACTAATAACCTACGGCCAATTAAAGTAAGTTCCATATTCATTTCTTTCCTGTTTTCCTCTCTTATATAAATGTTGTTCCATCGAAGTATTTAGCACACTCCTGCTGTTCAGTAATAAAGCAGAAGTTGTGTACGTGCAACGTTTGCTGAGGGTGGGGGGAGTAATTGTTGACTTAGTACAAGAAATCACAGAGGCCGTTTATGGTATCATCTCTTCTCCCGTCCAGGAAGAAAGAGCAGTGAACAAACATGAAGGTCCGAACGACACCCGACTTCTCCCAACAGCAATTGAAGATGAGGGCTTGCCTTCTGAAGAACAGCTAAAGCAGGTACGCTCGCAAAAGATAAATCTGAGTTCTCACATTGATAATATAATCCAAGTTTATCAAGGTGAATAAGCATGAAGTTGATAGCTATGGCATTCAGCATTGATAATATAATCCAAGTTTATCAATGTATGTAAATAAAGCATGATCTACATTTAGCCATTGTACCATATCCTTTTTTCCATTCAATTTTATTTTCATCCTTTTCTCTCTCAACATTCGTTGGATCTTCTTCATGACCCATCAGACAAAATCAAGAACAGCTACATATTCTAATCCAAAATCCCTTGCCTTAGATCTTAGGTCTCTTGTTCTCAGTAAGCCACCATTGCTTTCGCCGCCCATAATACTCAAGAGCAGCATATTAGTGGTAGCTGGAGTCGTCTCCGGCCCCATTAGATGCGTGGATTAG

mRNA sequence

CGAACCTATAATCTAGCAGCCTTTGCCCGAAGCTTCAGGATTTCTTCCATTTTCTTCCCTTTTTCTTTTCCTCCATTTCCCCCATTTTTTCAATTTTTCTTGCATCATGTTCGTTAGTACACACGTCAATTTTCGTCGTCGCTCAGGAGTCGCAGTACGAAGAACCTGGAAATCTCCTTCTTGTCGGTTCTAGCAATTCTTTCCCTTTTTCTGCGGTGAATTGTATGATGCTGGCACTTGAATCTGCCGTCAGAATCTCCCATGTCTCCTCCACCGATCATGTCCTCAATGTCACCGCATTCGCCTTTGTCCCAAGGCCGAGAGGCTAACATTTTGGAAGATGGAAATGATCGCGCATGTCGATCGTCGAAATTCCTTGTGATTGGTCATAGAGGATTCGGGATGAACATCTTGCAATCCTCTGATTCGCGTTTTAAATTAATGAAGGAGAATTCCATTCCGTCCTTCATGGCGGCTACTAGGTTTCCAGTCGATTTCATCGAATTCGACGTTCAGGTAACCAAAGATGGCTGCCCGGTCGTTTTCCATGACTGTTTGATTCTTACTGAGGAAAAGGGTGCTATTGTGGAGAAAAGAGTTACAGAGCTCACGCTGGAAGAATTTCTTTCATATGGGCCACAAGATGATCCTGGGAAGATGGGCAAGCCTCTATTTAGAAGGACCATAGATGGGGGAATATTTGAGTGGACAGTTGAAAGTGATGCGCCGCTATGCACACTGCGAGAAGTTTTTGCGAAAATTGATCATTCGATTGGTTTCAATATAGAATTGAAGTTCGATGATCTGGTGGTTTACAAAGAGGAGCAACTTGCTCATGTTCTCCAACAAATCTTAAAGGTGGTGAAAGAGAATGCCAGGGACAGACCTATTATATTTTCAAGTTTTATACCAGATGCTGCTCATTTAGTTAAGAAACTTCAGAGCACCTACTCTGTATTCTTCCTGACCAACGGAGGATCCAAACTTTACCCTGATGTTAGAAGGAACTCGTTGGAGGAAGCCATTAACGTGTGTATGACAGGTTGTTTGCACGGTATCGTTGCAGAAGTTTCATCGATTTTGAGAAATCCTGCAGCAGTCAATAGAATCAGAAATTCAGGATTCTCACTAATAACCTACGGCCAATTAAATAATAAAGCAGAAGTTGTGTACGTGCAACGTTTGCTGAGGGTGGGGGGAGTAATTGTTGACTTAGTACAAGAAATCACAGAGGCCGTTTATGGTATCATCTCTTCTCCCGTCCAGGAAGAAAGAGCAGTGAACAAACATGAAGGTCCGAACGACACCCGACTTCTCCCAACAGCAATTGAAGATGAGGGCTTGCCTTCTGAAGAACAGCTAAAGCAGGTACGCTCGCAAAAGATAAATCTGAGTTCTCACATTGATAATATAATCCAAACAAAATCAAGAACAGCTACATATTCTAATCCAAAATCCCTTGCCTTAGATCTTAGGTCTCTTGTTCTCAGTAAGCCACCATTGCTTTCGCCGCCCATAATACTCAAGAGCAGCATATTAGTGGTAGCTGGAGTCGTCTCCGGCCCCATTAGATGCGTGGATTAG

Coding sequence (CDS)

ATGTCTCCTCCACCGATCATGTCCTCAATGTCACCGCATTCGCCTTTGTCCCAAGGCCGAGAGGCTAACATTTTGGAAGATGGAAATGATCGCGCATGTCGATCGTCGAAATTCCTTGTGATTGGTCATAGAGGATTCGGGATGAACATCTTGCAATCCTCTGATTCGCGTTTTAAATTAATGAAGGAGAATTCCATTCCGTCCTTCATGGCGGCTACTAGGTTTCCAGTCGATTTCATCGAATTCGACGTTCAGGTAACCAAAGATGGCTGCCCGGTCGTTTTCCATGACTGTTTGATTCTTACTGAGGAAAAGGGTGCTATTGTGGAGAAAAGAGTTACAGAGCTCACGCTGGAAGAATTTCTTTCATATGGGCCACAAGATGATCCTGGGAAGATGGGCAAGCCTCTATTTAGAAGGACCATAGATGGGGGAATATTTGAGTGGACAGTTGAAAGTGATGCGCCGCTATGCACACTGCGAGAAGTTTTTGCGAAAATTGATCATTCGATTGGTTTCAATATAGAATTGAAGTTCGATGATCTGGTGGTTTACAAAGAGGAGCAACTTGCTCATGTTCTCCAACAAATCTTAAAGGTGGTGAAAGAGAATGCCAGGGACAGACCTATTATATTTTCAAGTTTTATACCAGATGCTGCTCATTTAGTTAAGAAACTTCAGAGCACCTACTCTGTATTCTTCCTGACCAACGGAGGATCCAAACTTTACCCTGATGTTAGAAGGAACTCGTTGGAGGAAGCCATTAACGTGTGTATGACAGGTTGTTTGCACGGTATCGTTGCAGAAGTTTCATCGATTTTGAGAAATCCTGCAGCAGTCAATAGAATCAGAAATTCAGGATTCTCACTAATAACCTACGGCCAATTAAATAATAAAGCAGAAGTTGTGTACGTGCAACGTTTGCTGAGGGTGGGGGGAGTAATTGTTGACTTAGTACAAGAAATCACAGAGGCCGTTTATGGTATCATCTCTTCTCCCGTCCAGGAAGAAAGAGCAGTGAACAAACATGAAGGTCCGAACGACACCCGACTTCTCCCAACAGCAATTGAAGATGAGGGCTTGCCTTCTGAAGAACAGCTAAAGCAGGTACGCTCGCAAAAGATAAATCTGAGTTCTCACATTGATAATATAATCCAAACAAAATCAAGAACAGCTACATATTCTAATCCAAAATCCCTTGCCTTAGATCTTAGGTCTCTTGTTCTCAGTAAGCCACCATTGCTTTCGCCGCCCATAATACTCAAGAGCAGCATATTAGTGGTAGCTGGAGTCGTCTCCGGCCCCATTAGATGCGTGGATTAG

Protein sequence

MSPPPIMSSMSPHSPLSQGREANILEDGNDRACRSSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDVQVTKDGCPVVFHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQDDPGKMGKPLFRRTIDGGIFEWTVESDAPLCTLREVFAKIDHSIGFNIELKFDDLVVYKEEQLAHVLQQILKVVKENARDRPIIFSSFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLHGIVAEVSSILRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRLLRVGGVIVDLVQEITEAVYGIISSPVQEERAVNKHEGPNDTRLLPTAIEDEGLPSEEQLKQVRSQKINLSSHIDNIIQTKSRTATYSNPKSLALDLRSLVLSKPPLLSPPIILKSSILVVAGVVSGPIRCVD

Homology

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BLAST of CmaCh06G016770 vs. ExPASy Swiss-Prot
Match: Q680A6 (Glycerophosphodiester phosphodiesterase GDPD3 OS=Arabidopsis thaliana OX=3702 GN=GDPD3 PE=2 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 5.7e-101
Identity = 182/321 (56.70%), Postives = 236/321 (73.52%), Query Frame = 0


Query: 9   SMSPHSPLSQGREANILEDGNDRACRSSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPS 68
           S+S  + LS G    + +D    A    KF+++GHRGFGMN+LQS D + K +KENS+ S
Sbjct: 9   SLSSSAMLSSG---VVEDDKKQEAIVFPKFVLMGHRGFGMNMLQSPDEKMKFIKENSLLS 68

Query: 69  FMAATRFPVDFIEFDVQVTKDGCPVVFHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQD 128
           F  A  FP+DFIEFDVQVT+DGCPV+FHD  + T+E+G I+EKRVTE+ L EFLSYGPQ 
Sbjct: 69  FNVAADFPIDFIEFDVQVTRDGCPVIFHDIFMFTQEQGVIIEKRVTEMDLHEFLSYGPQR 128

Query: 129 DPGKMGKPLFRRTIDGGIFEWTVESDAPLCTLREVFAKIDHSIGFNIELKFDDLVVYKEE 188
           D G   KP++R+T DG IFEW VE D PLCTL + F  + HS+GFNIELKFDD  VY E 
Sbjct: 129 D-GTNVKPMWRKTKDGRIFEWKVEKDDPLCTLEDAFLNVKHSLGFNIELKFDDNTVYGEG 188

Query: 189 QLAHVLQQILKVVKENARDRPIIFSSFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRR 248
           +L   L  IL VV E++++RPIIFSSF PDAA L++ +Q  Y VFFLTNGG ++Y DVRR
Sbjct: 189 ELRQTLDNILTVVNEHSKNRPIIFSSFHPDAARLIRNMQRCYPVFFLTNGGCEIYKDVRR 248

Query: 249 NSLEEAINVCMTGCLHGIVAEVSSILRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRL 308
           NSL+EAI +C    L G+V+EV +ILR P A+ R+++S  SL++YGQLNN  EV+Y+Q L
Sbjct: 249 NSLDEAIKLCKESGLQGLVSEVKAILRTPNAITRVKDSKLSLLSYGQLNNVVEVIYLQYL 308

Query: 309 LRVGGVIVDLVQEITEAVYGI 330
           + V GVIVD+V++I+EA+  I
Sbjct: 309 MGVEGVIVDMVKDISEAIANI 325

[Close]

BLAST of CmaCh06G016770 vs. ExPASy Swiss-Prot
Match: Q9SGA2 (Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GDPD1 PE=1 SV=1)

HSP 1 Score: 365.5 bits (937), Expect = 8.2e-100
Identity = 178/293 (60.75%), Postives = 228/293 (77.82%), Query Frame = 0


Query: 35  SSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDVQVTKDGCPVV 94
           ++KF+V+GHRG GMN+ QS D RF  +KENSI SF AA++FP+DFIEFDVQVT+DGCP++
Sbjct: 31  NNKFVVVGHRGHGMNMSQSPDLRFSALKENSILSFNAASKFPLDFIEFDVQVTRDGCPII 90

Query: 95  FHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQDDPGKMGKPLFRRTIDGGIFEWTVESD 154
           FHD  I +EE+G + EKRVTE+ L EF+SYGPQ D GK GKPL R++ +G I +W+V +D
Sbjct: 91  FHDDFIYSEEQGVVYEKRVTEVCLSEFMSYGPQRDTGKTGKPLLRKSKEGKIHKWSVATD 150

Query: 155 APLCTLREVFAKIDH-SIGFNIELKFDDLVVYKEEQLAHVLQQILKVVKENARDRPIIFS 214
              CTL+E F K+++ ++GFNIELK DD V Y  + L+ +L  IL+VV +   DR IIFS
Sbjct: 151 DSFCTLQEAFEKVENPNLGFNIELKLDDNVFYSSDHLSRLLLPILQVVSDIGNDRTIIFS 210

Query: 215 SFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLHGIVAEVSSI 274
           SF PDAA LV+KLQ+TY VFFLTNGG+++Y D RRNSLEEAI VC+ G L GIV+EV  +
Sbjct: 211 SFHPDAALLVRKLQTTYPVFFLTNGGTEMYHDTRRNSLEEAIKVCLEGGLQGIVSEVKGV 270

Query: 275 LRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRLLRVGGVIVDLVQEITEAV 327
            RNPA VN+I+ S  SL+TYG+LNN AE VY+Q L+ + GVIVD V+EITEAV
Sbjct: 271 FRNPALVNKIKESKLSLMTYGKLNNVAEAVYMQHLMGIEGVIVDHVEEITEAV 323

[Close]

BLAST of CmaCh06G016770 vs. ExPASy Swiss-Prot
Match: Q9FLM1 (Glycerophosphodiester phosphodiesterase GDPD2 OS=Arabidopsis thaliana OX=3702 GN=GDPD2 PE=2 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 8.5e-97
Identity = 171/309 (55.34%), Postives = 229/309 (74.11%), Query Frame = 0


Query: 25  LEDGNDRACRSSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDV 84
           LE     + R   F VIGHRG GMN+LQSSD R + +KENSI SF +A ++P+DFIEFDV
Sbjct: 25  LELSKPTSFRLPGFSVIGHRGIGMNVLQSSDRRARGVKENSILSFNSAAKYPIDFIEFDV 84

Query: 85  QVTKDGCPVVFHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQDDPGKMGKPLFRRTIDG 144
           QVTKD CPV+FHD  I +EE G + E RVT+L+L EFL YGPQ +  K+GK L R++ +G
Sbjct: 85  QVTKDDCPVIFHDDFIYSEENGIVNESRVTDLSLSEFLLYGPQKETEKIGKTLMRKSKEG 144

Query: 145 GIFEWTVESDAPLCTLREVFAKIDHSIGFNIELKFDDLVVYKEEQLAHVLQQILKVVKEN 204
            + +W V+ D  LCTL+E F +++ ++GFNIELKFDD  VY+ E L H+L+ +L+VV   
Sbjct: 145 KVLKWDVDLDDSLCTLQEAFEQVEQTLGFNIELKFDDQTVYEREFLVHILRSVLQVVSNY 204

Query: 205 ARDRPIIFSSFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLH 264
           A+DRP+IFSSF PDAA LV++LQSTY VFFLT+ G++++ D RRNSLEEAI VC+ G L 
Sbjct: 205 AKDRPVIFSSFQPDAAKLVRELQSTYPVFFLTDAGNEIHNDERRNSLEEAIQVCLEGGLQ 264

Query: 265 GIVAEVSSILRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRLLRVGGVIVDLVQEITE 324
           GIV+EV  + RNPAA+++I+ S  SL+TYG+LNN  E VY+Q ++ + GVIVD V+EI E
Sbjct: 265 GIVSEVKGVFRNPAAISKIKESNLSLLTYGKLNNVGEAVYMQYVMGIDGVIVDFVEEIIE 324

Query: 325 AVYGIISSP 334
           +   ++  P
Sbjct: 325 STTRMMIRP 333

[Close]

BLAST of CmaCh06G016770 vs. ExPASy Swiss-Prot
Match: Q02979 (Glycerophosphocholine phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=GDE1 PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.9e-33
Identity = 110/350 (31.43%), Postives = 157/350 (44.86%), Query Frame = 0


Query: 40   VIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDVQVTKDGCPVVFHDCL 99
            VIGHRG G N    + ++   + EN++ SF+ A      ++EFDVQ+TKD  PVV+HD L
Sbjct: 874  VIGHRGLGKN----NPNKSLQIGENTVESFIMAASLGASYVEFDVQLTKDNVPVVYHDFL 933

Query: 100  ILTEEKGAIVEKRVTELTLEEFLSYGPQD------------------------------- 159
            +   E G  V+  + ELTLE+FL     D                               
Sbjct: 934  V--AETG--VDIPMHELTLEQFLDLNNADKEHIQRGAGHSPHHVNGADTALQKYRGRSVD 993

Query: 160  ----------------DPG-------------KMGKPLFRRTIDGGIFEWTVESDAPLCT 219
                            DP              ++ K   +    G     ++ S     T
Sbjct: 994  DSDVSTLRRAWDLHDNDPNGKSNNAHWSDNRMRLTKTFKKNNFKGNARGHSIASS--FVT 1053

Query: 220  LREVFAKIDHSIGFNIELKFDDLVVYKEEQLAHVLQQ-------ILKVVKENARDRPIIF 279
            L+E+F KI  ++GFNIE KF  L   +EE+L  ++ +       +LKVV +NA  R IIF
Sbjct: 1054 LKELFKKIPANVGFNIECKFPMLDEAEEEELGQIMMEMNHWVDTVLKVVFDNANGRDIIF 1113

Query: 280  SSFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLHGIVAEVSS 323
            SSF PD   ++   Q    + FLT GGS+   D+R +SL+  I       L GIV+  + 
Sbjct: 1114 SSFHPDICIMLSLKQPVIPILFLTEGGSEQMADLRASSLQNGIRFAKKWNLLGIVSAAAP 1173

[Close]

BLAST of CmaCh06G016770 vs. ExPASy Swiss-Prot
Match: A0A1D8PNZ7 (Glycerophosphocholine phosphodiesterase GDE1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=GDE1 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.5e-32
Identity = 102/337 (30.27%), Postives = 157/337 (46.59%), Query Frame = 0


Query: 40   VIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDVQVTKDGCPVVFHDCL 99
            VIGHRG G N+   S  +   + EN++ SF+AA      ++EFDVQ+TKD  PVV+HD  
Sbjct: 819  VIGHRGLGKNL---SGKKSLQLGENTVESFIAAASLGASYVEFDVQLTKDHVPVVYHDFT 878

Query: 100  ILTEEKGAIVEKRVTELTLEEFLSY----------------------------------- 159
            +   E G  +   +  LTLE+F+ +                                   
Sbjct: 879  V--AESGVDIPMHL--LTLEQFMGFNTPTEKPTHTVDDEVLTRGKQRAQSSYQLSNNHND 938

Query: 160  -------GPQDDPGKMGKPLFRRTIDGGIFEWTVESDAPLCTLREVFAKIDHSIGFNIEL 219
                     +D+  K  K    +   G +   +V S+    TLRE+F K+ +++GFNIE+
Sbjct: 939  DIEKEFANQRDERMKFTKTWKNQGYKGNLRGSSVASN--FVTLRELFRKLPNNVGFNIEV 998

Query: 220  KFDDLVVYKEEQLAHV-------LQQILKVV-KENARDRPIIFSSFIPDAAHLVKKLQST 279
            K+  L   + E +  +       +  ILKV+  EN   R I+FSSF PD   L+   Q T
Sbjct: 999  KYPMLDEAQLEDMGEIGVDLNFFVDTILKVIYDENTTGRDIVFSSFHPDICLLLSLKQPT 1058

Query: 280  YSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLHGIVAEVSSILRNPAAVNRIRNSGFS 327
              V FLT  G+    D+R +SL+ A+       L GIV+   ++++ P     +++ G  
Sbjct: 1059 MPVLFLTEAGTAPMYDIRASSLQNAVRFSKKWNLLGIVSNALALIKTPRLAQVVKSMGLV 1118

[Close]

BLAST of CmaCh06G016770 vs. TAIR 10
Match: AT5G43300.1 (PLC-like phosphodiesterases superfamily protein )

HSP 1 Score: 369.4 bits (947), Expect = 4.0e-102
Identity = 182/321 (56.70%), Postives = 236/321 (73.52%), Query Frame = 0


Query: 9   SMSPHSPLSQGREANILEDGNDRACRSSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPS 68
           S+S  + LS G    + +D    A    KF+++GHRGFGMN+LQS D + K +KENS+ S
Sbjct: 9   SLSSSAMLSSG---VVEDDKKQEAIVFPKFVLMGHRGFGMNMLQSPDEKMKFIKENSLLS 68

Query: 69  FMAATRFPVDFIEFDVQVTKDGCPVVFHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQD 128
           F  A  FP+DFIEFDVQVT+DGCPV+FHD  + T+E+G I+EKRVTE+ L EFLSYGPQ 
Sbjct: 69  FNVAADFPIDFIEFDVQVTRDGCPVIFHDIFMFTQEQGVIIEKRVTEMDLHEFLSYGPQR 128

Query: 129 DPGKMGKPLFRRTIDGGIFEWTVESDAPLCTLREVFAKIDHSIGFNIELKFDDLVVYKEE 188
           D G   KP++R+T DG IFEW VE D PLCTL + F  + HS+GFNIELKFDD  VY E 
Sbjct: 129 D-GTNVKPMWRKTKDGRIFEWKVEKDDPLCTLEDAFLNVKHSLGFNIELKFDDNTVYGEG 188

Query: 189 QLAHVLQQILKVVKENARDRPIIFSSFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRR 248
           +L   L  IL VV E++++RPIIFSSF PDAA L++ +Q  Y VFFLTNGG ++Y DVRR
Sbjct: 189 ELRQTLDNILTVVNEHSKNRPIIFSSFHPDAARLIRNMQRCYPVFFLTNGGCEIYKDVRR 248

Query: 249 NSLEEAINVCMTGCLHGIVAEVSSILRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRL 308
           NSL+EAI +C    L G+V+EV +ILR P A+ R+++S  SL++YGQLNN  EV+Y+Q L
Sbjct: 249 NSLDEAIKLCKESGLQGLVSEVKAILRTPNAITRVKDSKLSLLSYGQLNNVVEVIYLQYL 308

Query: 309 LRVGGVIVDLVQEITEAVYGI 330
           + V GVIVD+V++I+EA+  I
Sbjct: 309 MGVEGVIVDMVKDISEAIANI 325

[Close]

BLAST of CmaCh06G016770 vs. TAIR 10
Match: AT3G02040.1 (senescence-related gene 3 )

HSP 1 Score: 365.5 bits (937), Expect = 5.8e-101
Identity = 178/293 (60.75%), Postives = 228/293 (77.82%), Query Frame = 0


Query: 35  SSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDVQVTKDGCPVV 94
           ++KF+V+GHRG GMN+ QS D RF  +KENSI SF AA++FP+DFIEFDVQVT+DGCP++
Sbjct: 31  NNKFVVVGHRGHGMNMSQSPDLRFSALKENSILSFNAASKFPLDFIEFDVQVTRDGCPII 90

Query: 95  FHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQDDPGKMGKPLFRRTIDGGIFEWTVESD 154
           FHD  I +EE+G + EKRVTE+ L EF+SYGPQ D GK GKPL R++ +G I +W+V +D
Sbjct: 91  FHDDFIYSEEQGVVYEKRVTEVCLSEFMSYGPQRDTGKTGKPLLRKSKEGKIHKWSVATD 150

Query: 155 APLCTLREVFAKIDH-SIGFNIELKFDDLVVYKEEQLAHVLQQILKVVKENARDRPIIFS 214
              CTL+E F K+++ ++GFNIELK DD V Y  + L+ +L  IL+VV +   DR IIFS
Sbjct: 151 DSFCTLQEAFEKVENPNLGFNIELKLDDNVFYSSDHLSRLLLPILQVVSDIGNDRTIIFS 210

Query: 215 SFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLHGIVAEVSSI 274
           SF PDAA LV+KLQ+TY VFFLTNGG+++Y D RRNSLEEAI VC+ G L GIV+EV  +
Sbjct: 211 SFHPDAALLVRKLQTTYPVFFLTNGGTEMYHDTRRNSLEEAIKVCLEGGLQGIVSEVKGV 270

Query: 275 LRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRLLRVGGVIVDLVQEITEAV 327
            RNPA VN+I+ S  SL+TYG+LNN AE VY+Q L+ + GVIVD V+EITEAV
Sbjct: 271 FRNPALVNKIKESKLSLMTYGKLNNVAEAVYMQHLMGIEGVIVDHVEEITEAV 323

[Close]

BLAST of CmaCh06G016770 vs. TAIR 10
Match: AT5G41080.1 (PLC-like phosphodiesterases superfamily protein )

HSP 1 Score: 355.5 bits (911), Expect = 6.0e-98
Identity = 171/309 (55.34%), Postives = 229/309 (74.11%), Query Frame = 0


Query: 25  LEDGNDRACRSSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDV 84
           LE     + R   F VIGHRG GMN+LQSSD R + +KENSI SF +A ++P+DFIEFDV
Sbjct: 25  LELSKPTSFRLPGFSVIGHRGIGMNVLQSSDRRARGVKENSILSFNSAAKYPIDFIEFDV 84

Query: 85  QVTKDGCPVVFHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQDDPGKMGKPLFRRTIDG 144
           QVTKD CPV+FHD  I +EE G + E RVT+L+L EFL YGPQ +  K+GK L R++ +G
Sbjct: 85  QVTKDDCPVIFHDDFIYSEENGIVNESRVTDLSLSEFLLYGPQKETEKIGKTLMRKSKEG 144

Query: 145 GIFEWTVESDAPLCTLREVFAKIDHSIGFNIELKFDDLVVYKEEQLAHVLQQILKVVKEN 204
            + +W V+ D  LCTL+E F +++ ++GFNIELKFDD  VY+ E L H+L+ +L+VV   
Sbjct: 145 KVLKWDVDLDDSLCTLQEAFEQVEQTLGFNIELKFDDQTVYEREFLVHILRSVLQVVSNY 204

Query: 205 ARDRPIIFSSFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLH 264
           A+DRP+IFSSF PDAA LV++LQSTY VFFLT+ G++++ D RRNSLEEAI VC+ G L 
Sbjct: 205 AKDRPVIFSSFQPDAAKLVRELQSTYPVFFLTDAGNEIHNDERRNSLEEAIQVCLEGGLQ 264

Query: 265 GIVAEVSSILRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRLLRVGGVIVDLVQEITE 324
           GIV+EV  + RNPAA+++I+ S  SL+TYG+LNN  E VY+Q ++ + GVIVD V+EI E
Sbjct: 265 GIVSEVKGVFRNPAAISKIKESNLSLLTYGKLNNVGEAVYMQYVMGIDGVIVDFVEEIIE 324

Query: 325 AVYGIISSP 334
           +   ++  P
Sbjct: 325 STTRMMIRP 333

[Close]

BLAST of CmaCh06G016770 vs. TAIR 10
Match: AT5G41080.2 (PLC-like phosphodiesterases superfamily protein )

HSP 1 Score: 355.5 bits (911), Expect = 6.0e-98
Identity = 171/309 (55.34%), Postives = 229/309 (74.11%), Query Frame = 0


Query: 25  LEDGNDRACRSSKFLVIGHRGFGMNILQSSDSRFKLMKENSIPSFMAATRFPVDFIEFDV 84
           LE     + R   F VIGHRG GMN+LQSSD R + +KENSI SF +A ++P+DFIEFDV
Sbjct: 9   LELSKPTSFRLPGFSVIGHRGIGMNVLQSSDRRARGVKENSILSFNSAAKYPIDFIEFDV 68

Query: 85  QVTKDGCPVVFHDCLILTEEKGAIVEKRVTELTLEEFLSYGPQDDPGKMGKPLFRRTIDG 144
           QVTKD CPV+FHD  I +EE G + E RVT+L+L EFL YGPQ +  K+GK L R++ +G
Sbjct: 69  QVTKDDCPVIFHDDFIYSEENGIVNESRVTDLSLSEFLLYGPQKETEKIGKTLMRKSKEG 128

Query: 145 GIFEWTVESDAPLCTLREVFAKIDHSIGFNIELKFDDLVVYKEEQLAHVLQQILKVVKEN 204
            + +W V+ D  LCTL+E F +++ ++GFNIELKFDD  VY+ E L H+L+ +L+VV   
Sbjct: 129 KVLKWDVDLDDSLCTLQEAFEQVEQTLGFNIELKFDDQTVYEREFLVHILRSVLQVVSNY 188

Query: 205 ARDRPIIFSSFIPDAAHLVKKLQSTYSVFFLTNGGSKLYPDVRRNSLEEAINVCMTGCLH 264
           A+DRP+IFSSF PDAA LV++LQSTY VFFLT+ G++++ D RRNSLEEAI VC+ G L 
Sbjct: 189 AKDRPVIFSSFQPDAAKLVRELQSTYPVFFLTDAGNEIHNDERRNSLEEAIQVCLEGGLQ 248

Query: 265 GIVAEVSSILRNPAAVNRIRNSGFSLITYGQLNNKAEVVYVQRLLRVGGVIVDLVQEITE 324
           GIV+EV  + RNPAA+++I+ S  SL+TYG+LNN  E VY+Q ++ + GVIVD V+EI E
Sbjct: 249 GIVSEVKGVFRNPAAISKIKESNLSLLTYGKLNNVGEAVYMQYVMGIDGVIVDFVEEIIE 308

Query: 325 AVYGIISSP 334
           +   ++  P
Sbjct: 309 STTRMMIRP 317

The following BLAST results are available for this feature:

BLAST of CmaCh06G016770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680A6	5.7e-101	56.70	Glycerophosphodiester phosphodiesterase GDPD3 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9SGA2	8.2e-100	60.75	Glycerophosphodiester phosphodiesterase GDPD1, chloroplastic OS=Arabidopsis thal...	[more]
Q9FLM1	8.5e-97	55.34	Glycerophosphodiester phosphodiesterase GDPD2 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q02979	3.9e-33	31.43	Glycerophosphocholine phosphodiesterase GDE1 OS=Saccharomyces cerevisiae (strain...	[more]
A0A1D8PNZ7	1.5e-32	30.27	Glycerophosphocholine phosphodiesterase GDE1 OS=Candida albicans (strain SC5314 ...	[more]

BLAST of CmaCh06G016770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43300.1	4.0e-102	56.70	PLC-like phosphodiesterases superfamily protein	[more]
AT3G02040.1	5.8e-101	60.75	senescence-related gene 3	[more]
AT5G41080.1	6.0e-98	55.34	PLC-like phosphodiesterases superfamily protein	[more]
AT5G41080.2	6.0e-98	55.34	PLC-like phosphodiesterases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR030395	Glycerophosphodiester phosphodiesterase domain	PFAM	PF03009	GDPD	coord: 43..319 e-value: 1.1E-49 score: 169.6
IPR030395	Glycerophosphodiester phosphodiesterase domain	PROSITE	PS51704	GP_PDE	coord: 38..326 score: 32.007061
IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	GENE3D	3.20.20.190	Phosphatidylinositol (PI) phosphodiesterase	coord: 26..326 e-value: 1.6E-49 score: 171.0
IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	SUPERFAMILY	51695	PLC-like phosphodiesterases	coord: 37..320
None	No IPR available	PANTHER	PTHR22958:SF34	GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE GDPD3	coord: 25..342
None	No IPR available	PANTHER	PTHR22958	GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE	coord: 25..342

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016770.1	CmaCh06G016770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006071	glycerol metabolic process
biological_process	GO:0046475	glycerophospholipid catabolic process
biological_process	GO:0006629	lipid metabolic process
molecular_function	GO:0008889	glycerophosphodiester phosphodiesterase activity
molecular_function	GO:0008081	phosphoric diester hydrolase activity