CmaCh06G016640 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G016640
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Protein of unknown function (DUF1685)
Location	Cma_Chr06: 10283073 .. 10284212 (-)
RNA-Seq Expression	CmaCh06G016640
Synteny	CmaCh06G016640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCCAACTCTGCCGCGGACACGTTTTACAGAACGAGAGGCGAGTTTGAAAAACGAGAAAAAAAATGGGAAGTGGTTTCTTTAGCGAATCTGAATTGTGGGTGAATGGAGTTCGAGAAGACCTAGAGGAGGATACCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTTAGTGGCTCTTTTCTGTTGGATCTTGATTTGGAACTGGATTTCTTTCTTTTTTTCGTACATTTCTGTTTATCTGGATTATGTAGCTCGTTTATGATTTGAAAGCAGTTTGAATCGAGAATGAGGTGATGACTGTTGAAATTTAGGGACTAGAATGGAGTTTTTCCAATTGTTAGAACTCTAAAATAGAATGGATAAGTATGAGAATTGACAGATTTAGGGTCCGTTTAGGTTTTTGTTCTTTACTGGTGGGGTGGAGGCAACGGTTTTCGATTTTTCTTCACTCTAACCTGTGCTTATCACTTTGAATTTCGTGGGGATTCTCAATTTTACCTGTTTTATCTGCAAGTTTTTCAAGAACAAAAGACTAATATGCTCTCTAACTTATAACTTAAAACTTATCAGATACGAACCATATGATTATAATGCATAGGATTCCAGTTTATATTTGTCCTTCTTTTCTCTGGATTACAATTTTTTATATCTTTTAAAGGAATGGTTCTGAATTTTTGGTGATGTTTGGTCATATAGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAA

mRNA sequence

TTTCTCCAACTCTGCCGCGGACACGTTTTACAGAACGAGAGGCGAGTTTGAAAAACGAGAAAAAAAATGGGAAGTGGTTTCTTTAGCGAATCTGAATTGTGGGTGAATGGAGTTCGAGAAGACCTAGAGGAGGATACCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAA

Coding sequence (CDS)

ATGGGAAGTGGTTTCTTTAGCGAATCTGAATTGTGGGTGAATGGAGTTCGAGAAGACCTAGAGGAGGATACCTCCATTGAAGAGGGTGAGGAAATCGGGTCGGATTCGGATTTGGACGAGTCGGTTCAAATGGGGATGGAAAATTTGACGAAGAAGATGAAGAAGAAGAAGAAGAATCATGTTTTGCTTGAGGGGTTTGTGGAGGATGAGGATGAGTTGATGAGGACGAAGAGCTTGACGGATGAGGATCTGGATGAGCTTAAAGGGTGTGTGGATCTAGGGTTTGGTTTCAGTTACGATGAGATTCCGGAGCTCTGCAACACTCTGCCGGCGTTGGAGCTCTGTTATTCCATGAGCCAAAAGTACATGGACGAGCACCAGAAGTCGCCGGAGAGCTCGACGGCGTTGGATTCGTGTTCGTCAGTGTCGAGTCCGATTGCGAATTGGAAGATCTCCAGTCCTGGTGATCATCCAGAAGATGTTAAGGCAAGGCTCAAATTTTGGGCTCAGGCAGTGGCATGTACTGTTAGATTATGCAACTAA

Protein sequence

MGSGFFSESELWVNGVREDLEEDTSIEEGEEIGSDSDLDESVQMGMENLTKKMKKKKKNHVLLEGFVEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNTLPALELCYSMSQKYMDEHQKSPESSTALDSCSSVSSPIANWKISSPGDHPEDVKARLKFWAQAVACTVRLCN

Homology

[Close]

BLAST of CmaCh06G016640 vs. TAIR 10
Match: AT2G31560.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 188.7 bits (478), Expect = 4.0e-48
Identity = 91/135 (67.41%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 50  TKKMKKKKKNHVLLEGF-VEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNT 109
           ++K  +KKK+ VLLEG+ ++D+D+L R KSLTD+DL+ELKGC+DLGFGFSYDEIPELCNT
Sbjct: 68  SRKKLEKKKSQVLLEGYALDDQDDLTRAKSLTDDDLEELKGCLDLGFGFSYDEIPELCNT 127

Query: 110 LPALELCYSMSQKYMDEHQKSPESSTALDSCS---SVSSPIANWKISSPGDHPEDVKARL 169
           LPALELCYSMSQK++D+ Q++   S   D  S   + ++PIANWKISSPGD P+DVKARL
Sbjct: 128 LPALELCYSMSQKFLDDKQQNHHKSQEEDDSSPPPTTTAPIANWKISSPGDDPDDVKARL 187

Query: 170 KFWAQAVACTVRLCN 181
           K+WAQ VACTVRLC+
Sbjct: 188 KYWAQTVACTVRLCS 202

[Close]

BLAST of CmaCh06G016640 vs. TAIR 10
Match: AT2G31560.2 (Protein of unknown function (DUF1685) )

HSP 1 Score: 188.7 bits (478), Expect = 4.0e-48
Identity = 91/135 (67.41%), Postives = 114/135 (84.44%), Query Frame = 0


Query: 50  TKKMKKKKKNHVLLEGF-VEDEDELMRTKSLTDEDLDELKGCVDLGFGFSYDEIPELCNT 109
           ++K  +KKK+ VLLEG+ ++D+D+L R KSLTD+DL+ELKGC+DLGFGFSYDEIPELCNT
Sbjct: 68  SRKKLEKKKSQVLLEGYALDDQDDLTRAKSLTDDDLEELKGCLDLGFGFSYDEIPELCNT 127

Query: 110 LPALELCYSMSQKYMDEHQKSPESSTALDSCS---SVSSPIANWKISSPGDHPEDVKARL 169
           LPALELCYSMSQK++D+ Q++   S   D  S   + ++PIANWKISSPGD P+DVKARL
Sbjct: 128 LPALELCYSMSQKFLDDKQQNHHKSQEEDDSSPPPTTTAPIANWKISSPGDDPDDVKARL 187

Query: 170 KFWAQAVACTVRLCN 181
           K+WAQ VACTVRLC+
Sbjct: 188 KYWAQTVACTVRLCS 202

[Close]

BLAST of CmaCh06G016640 vs. TAIR 10
Match: AT1G05870.1 (Protein of unknown function (DUF1685) )

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 93/144 (64.58%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 50  TKKMKKKKKNHVLLEGFVE---------DEDELMRTKSLTDEDLDELKGCVDLGFGFSYD 109
           ++K  ++KK+ VLLEG+VE          +D+L R+KSLTD+DL++L+GC+DLGFGFSYD
Sbjct: 46  SRKKLERKKSQVLLEGYVETASSSSVDDQKDDLTRSKSLTDDDLEDLRGCLDLGFGFSYD 105

Query: 110 EIPELCNTLPALELCYSMSQKYMDEHQ-KSPESSTALDSCSS---VSSPIANWKISSPGD 169
           EIPELCNTLPALELCYSMSQK++D+ Q KSPE+S+  D  S     ++PIANWKISSPGD
Sbjct: 106 EIPELCNTLPALELCYSMSQKFLDDKQNKSPETSSVEDCPSPPLVTATPIANWKISSPGD 165

Query: 170 HPEDVKARLKFWAQAVACTVRLCN 181
           +P+DVKARLK+WAQAVACTV+LC+
Sbjct: 166 NPDDVKARLKYWAQAVACTVQLCS 189

[Close]

BLAST of CmaCh06G016640 vs. TAIR 10
Match: AT1G05870.2 (Protein of unknown function (DUF1685) )

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 93/144 (64.58%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 50  TKKMKKKKKNHVLLEGFVE---------DEDELMRTKSLTDEDLDELKGCVDLGFGFSYD 109
           ++K  ++KK+ VLLEG+VE          +D+L R+KSLTD+DL++L+GC+DLGFGFSYD
Sbjct: 46  SRKKLERKKSQVLLEGYVETASSSSVDDQKDDLTRSKSLTDDDLEDLRGCLDLGFGFSYD 105

Query: 110 EIPELCNTLPALELCYSMSQKYMDEHQ-KSPESSTALDSCSS---VSSPIANWKISSPGD 169
           EIPELCNTLPALELCYSMSQK++D+ Q KSPE+S+  D  S     ++PIANWKISSPGD
Sbjct: 106 EIPELCNTLPALELCYSMSQKFLDDKQNKSPETSSVEDCPSPPLVTATPIANWKISSPGD 165

Query: 170 HPEDVKARLKFWAQAVACTVRLCN 181
           +P+DVKARLK+WAQAVACTV+LC+
Sbjct: 166 NPDDVKARLKYWAQAVACTVQLCS 189

[Close]

BLAST of CmaCh06G016640 vs. TAIR 10
Match: AT1G05870.3 (Protein of unknown function (DUF1685) )

HSP 1 Score: 186.0 bits (471), Expect = 2.6e-47
Identity = 93/144 (64.58%), Postives = 119/144 (82.64%), Query Frame = 0


Query: 50  TKKMKKKKKNHVLLEGFVE---------DEDELMRTKSLTDEDLDELKGCVDLGFGFSYD 109
           ++K  ++KK+ VLLEG+VE          +D+L R+KSLTD+DL++L+GC+DLGFGFSYD
Sbjct: 46  SRKKLERKKSQVLLEGYVETASSSSVDDQKDDLTRSKSLTDDDLEDLRGCLDLGFGFSYD 105

Query: 110 EIPELCNTLPALELCYSMSQKYMDEHQ-KSPESSTALDSCSS---VSSPIANWKISSPGD 169
           EIPELCNTLPALELCYSMSQK++D+ Q KSPE+S+  D  S     ++PIANWKISSPGD
Sbjct: 106 EIPELCNTLPALELCYSMSQKFLDDKQNKSPETSSVEDCPSPPLVTATPIANWKISSPGD 165

Query: 170 HPEDVKARLKFWAQAVACTVRLCN 181
           +P+DVKARLK+WAQAVACTV+LC+
Sbjct: 166 NPDDVKARLKYWAQAVACTVQLCS 189

The following BLAST results are available for this feature:

BLAST of CmaCh06G016640 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G016640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31560.1	4.0e-48	67.41	Protein of unknown function (DUF1685)	[more]
AT2G31560.2	4.0e-48	67.41	Protein of unknown function (DUF1685)	[more]
AT1G05870.1	2.6e-47	64.58	Protein of unknown function (DUF1685)	[more]
AT1G05870.2	2.6e-47	64.58	Protein of unknown function (DUF1685)	[more]
AT1G05870.3	2.6e-47	64.58	Protein of unknown function (DUF1685)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012881	Protein of unknown function DUF1685	PFAM	PF07939	DUF1685	coord: 79..134 e-value: 1.2E-27 score: 95.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..39
None	No IPR available	PANTHER	PTHR31865:SF0	EXPRESSED PROTEIN	coord: 17..180
None	No IPR available	PANTHER	PTHR31865	OSJNBA0071G03.3 PROTEIN	coord: 17..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G016640.1	CmaCh06G016640.1	mRNA