CmaCh06G016580 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G016580
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionDuplicated homeodomain-like superfamily protein
LocationCma_Chr06: 10258163 .. 10259349 (+)
RNA-Seq ExpressionCmaCh06G016580
SyntenyCmaCh06G016580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATACCGATTAGTAATGTGGTGCTTCAGCAGTCGCCGACGACAATGACGACGCTACCGGAAAATCAATCGATGAGATTCGAGAATGACTTTAGGCTCGCCGATCCATCTATGAGTGAGGCGGAGATTTATCATAACGCTTATCTGAATCTATATAACGAAGATTTGTCTCCGTTCGAGACTTCTATCAACGGCGGCTATGAGGCAGAGTTTTATTGTCCTAATGAAACGATGCCGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTTCGGCTCCGGCTCCAACTCCGACGTTTTATTGCCCTAATTATAGCTATGAAACGATGTCGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTCCAGCTCCAGCTCCGGCTCCGGCGTTTTATTGCCCTAATTATAGCTATGAAACGATGCTGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTTTGGCTCCGGCTCCGGCTCCGGCTCCGACTCCGACTCCGACTCCGACTCCAATGGAGAATTCTGGTTTTCTTTCAGATGTCGTTAATTTTTGCTCCAATAATCAGATGCATCGGGTAGCGGCAAACAATGGCAGAGTCGGCCAATCATCAAGAATGAGGATAATTTGGACAGTTGACGAGCACAAGTAAAACAACTAAAATAACTAACTGTGTAATTTGTGTAATAATTGTGCTTCAAAAATGAAACAATTGTGTAATTTTTTTTTTTTTTTTTTTTTTGGTGCAGGTTATTTCTGGTAGGAATGGCGATATTTGGCTCGGGTAATTGGAAAAGCATCGCAAATAAAGTCGTGCTTACAAAAACTCACACGCAAGTAGCTAGTCACGCTCAAAAGTTTTTCACTCGGCAACAAATACCGAAAGAACAACGAAAAAGAAAGAGTATTCATGATATCGATACGGTCGATCCCGAATTATTGTCGGAGGTGTATGCTCGTTTAGAATCACAACCAGAAACACGAACACGATCACGACCACGACCACGACCACGACCACCACCGACACCGCCACTGCCATCGTTGACAAACTATTCCCCGTTGCGCATGGATCCAGATCCGACCCAACCATATGAGCAATTCAATAATTACGTGCCCAATGTTGAACAGCTACCGCTGCCATCGCAGCCAGAATTTGTGCATAACCAAAACGTAAACTACTGA

mRNA sequence

ATGGCGATACCGATTAGTAATGTGGTGCTTCAGCAGTCGCCGACGACAATGACGACGCTACCGGAAAATCAATCGATGAGATTCGAGAATGACTTTAGGCTCGCCGATCCATCTATGAGTGAGGCGGAGATTTATCATAACGCTTATCTGAATCTATATAACGAAGATTTGTCTCCGTTCGAGACTTCTATCAACGGCGGCTATGAGGCAGAGTTTTATTGTCCTAATGAAACGATGCCGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTTCGGCTCCGGCTCCAACTCCGACGTTTTATTGCCCTAATTATAGCTATGAAACGATGTCGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTCCAGCTCCAGCTCCGGCTCCGGCGTTTTATTGCCCTAATTATAGCTATGAAACGATGCTGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTTTGGCTCCGGCTCCGGCTCCGGCTCCGACTCCGACTCCGACTCCGACTCCAATGGAGAATTCTGGTTTTCTTTCAGATGTCGTTAATTTTTGCTCCAATAATCAGATGCATCGGGTAGCGGCAAACAATGGCAGAGTCGGCCAATCATCAAGAATGAGGATAATTTGGACAGTTGACGAGCACAAGTTATTTCTGGTAGGAATGGCGATATTTGGCTCGGGTAATTGGAAAAGCATCGCAAATAAAGTCGTGCTTACAAAAACTCACACGCAAGTAGCTAGTCACGCTCAAAAGTTTTTCACTCGGCAACAAATACCGAAAGAACAACGAAAAAGAAAGAGTATTCATGATATCGATACGGTCGATCCCGAATTATTGTCGGAGGTGTATGCTCGTTTAGAATCACAACCAGAAACACGAACACGATCACGACCACGACCACGACCACGACCACCACCGACACCGCCACTGCCATCGTTGACAAACTATTCCCCGTTGCGCATGGATCCAGATCCGACCCAACCATATGAGCAATTCAATAATTACGTGCCCAATGTTGAACAGCTACCGCTGCCATCGCAGCCAGAATTTGTGCATAACCAAAACGTAAACTACTGA

Coding sequence (CDS)

ATGGCGATACCGATTAGTAATGTGGTGCTTCAGCAGTCGCCGACGACAATGACGACGCTACCGGAAAATCAATCGATGAGATTCGAGAATGACTTTAGGCTCGCCGATCCATCTATGAGTGAGGCGGAGATTTATCATAACGCTTATCTGAATCTATATAACGAAGATTTGTCTCCGTTCGAGACTTCTATCAACGGCGGCTATGAGGCAGAGTTTTATTGTCCTAATGAAACGATGCCGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTTCGGCTCCGGCTCCAACTCCGACGTTTTATTGCCCTAATTATAGCTATGAAACGATGTCGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTCCAGCTCCAGCTCCGGCTCCGGCGTTTTATTGCCCTAATTATAGCTATGAAACGATGCTGTTTTGTGCTCCTTCCACTTACAATAACTTATCTCCTTTGGCTCCGGCTCCGGCTCCGGCTCCGACTCCGACTCCGACTCCGACTCCAATGGAGAATTCTGGTTTTCTTTCAGATGTCGTTAATTTTTGCTCCAATAATCAGATGCATCGGGTAGCGGCAAACAATGGCAGAGTCGGCCAATCATCAAGAATGAGGATAATTTGGACAGTTGACGAGCACAAGTTATTTCTGGTAGGAATGGCGATATTTGGCTCGGGTAATTGGAAAAGCATCGCAAATAAAGTCGTGCTTACAAAAACTCACACGCAAGTAGCTAGTCACGCTCAAAAGTTTTTCACTCGGCAACAAATACCGAAAGAACAACGAAAAAGAAAGAGTATTCATGATATCGATACGGTCGATCCCGAATTATTGTCGGAGGTGTATGCTCGTTTAGAATCACAACCAGAAACACGAACACGATCACGACCACGACCACGACCACGACCACCACCGACACCGCCACTGCCATCGTTGACAAACTATTCCCCGTTGCGCATGGATCCAGATCCGACCCAACCATATGAGCAATTCAATAATTACGTGCCCAATGTTGAACAGCTACCGCTGCCATCGCAGCCAGAATTTGTGCATAACCAAAACGTAAACTACTGA

Protein sequence

MAIPISNVVLQQSPTTMTTLPENQSMRFENDFRLADPSMSEAEIYHNAYLNLYNEDLSPFETSINGGYEAEFYCPNETMPFCAPSTYNNLSPSAPAPTPTFYCPNYSYETMSFCAPSTYNNLSPPAPAPAPAFYCPNYSYETMLFCAPSTYNNLSPLAPAPAPAPTPTPTPTPMENSGFLSDVVNFCSNNQMHRVAANNGRVGQSSRMRIIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKFFTRQQIPKEQRKRKSIHDIDTVDPELLSEVYARLESQPETRTRSRPRPRPRPPPTPPLPSLTNYSPLRMDPDPTQPYEQFNNYVPNVEQLPLPSQPEFVHNQNVNY
Homology
BLAST of CmaCh06G016580 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-15
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 197 ANNGRVGQSSRMRIIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKFF 256
           A   +  Q  R  I WT DEH+LFL+G+  +G G+W+SI+   V+T+T TQVASHAQK+F
Sbjct: 105 AGKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 164

Query: 257 TRQQIPKEQRKRKSIHDIDTV 278
            R     + R+R SIHDI +V
Sbjct: 165 IRLNSMNKDRRRSSIHDITSV 185

BLAST of CmaCh06G016580 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-14
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 204 QSSRMRIIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKFFTRQQIPK 263
           Q  R  I WT +EH+LFL+G+  FG G+W+SI+   V+++T TQVASHAQK+F R     
Sbjct: 136 QERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMN 195

Query: 264 EQRKRKSIHDIDTV 278
             R+R SIHDI +V
Sbjct: 196 RDRRRSSIHDITSV 209

BLAST of CmaCh06G016580 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-14
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 204 QSSRMRIIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKFFTRQQIPK 263
           Q  R  I WT +EH+LFL+G+  FG G+W+SI+   V+++T TQVASHAQK+F R     
Sbjct: 136 QERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMN 195

Query: 264 EQRKRKSIHDIDTV 278
             R+R SIHDI +V
Sbjct: 196 RDRRRSSIHDITSV 209

BLAST of CmaCh06G016580 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.2e-13
Identity = 46/117 (39.32%), Postives = 70/117 (59.83%), Query Frame = 0

Query: 197 ANNGRVGQSSRMR-IIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKF 256
           +++GR  +  R + + WT +EHKLFL+G+  +G G+W++I+   V+T+T TQVASHAQK+
Sbjct: 118 SSSGRPSEQERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 177

Query: 257 FTRQQIPKEQRKRKSIHDIDTVDPELLSEVYARLESQPETRTRSRPRPRPRPPPTPP 313
           F RQ    + ++R SIHDI TV+   LS+                P P  + PP+ P
Sbjct: 178 FIRQLSGGKDKRRASIHDITTVN---LSD-------------NQTPSPDNKKPPSSP 218

BLAST of CmaCh06G016580 vs. ExPASy Swiss-Prot
Match: Q9FKF9 (Probable transcription factor At5g61620 OS=Arabidopsis thaliana OX=3702 GN=At5g61620 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-09
Identity = 50/169 (29.59%), Postives = 81/169 (47.93%), Query Frame = 0

Query: 182 DVVNFCSNNQMHRVAANNGRVGQSSRMRIIWTVDEHKLFLVGMAIFGSGNWKSIANKVVL 241
           D   + S+ Q+H   +  G+     +    WT +EH+ FL+G+   G G+W+ IA   V 
Sbjct: 83  DDTGYHSDGQIH---SKKGKTAHEKKKGKPWTEEEHRNFLIGLNKLGKGDWRGIAKSFVS 142

Query: 242 TKTHTQVASHAQKFFTRQQIPKEQRKRKSIHDIDTVDPELLSEVYARLESQPETRTRSRP 301
           T+T TQVASHAQK+F R  +  ++++R S+ DI              LE Q E + R+  
Sbjct: 143 TRTPTQVASHAQKYFIRLNVNDKRKRRASLFDIS-------------LEDQKE-KERNSQ 202

Query: 302 RPRPRPPPTPPLPSLTNYSPLRMDPDPTQPYEQFNN----YVPNVEQLP 347
               + PP  P+  +    P+      T+   +F N    Y+P  + +P
Sbjct: 203 DASTKTPPKQPITGI--QQPVVQGHTQTEISNRFQNLSMEYMPIYQPIP 232

BLAST of CmaCh06G016580 vs. TAIR 10
Match: AT5G04760.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 95.5 bits (236), Expect = 9.2e-20
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0

Query: 203 GQSSRMR-IIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKFFTRQQI 262
           G+S R R   WT +EHKLFL+G+  +G G+W+SI+  VV+T+T TQVASHAQK+F RQ  
Sbjct: 91  GESERKRGTPWTENEHKLFLIGLKRYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNS 150

Query: 263 PKEQRKRKSIHDIDTVDPEL 282
            K++RKR SIHDI TVD  L
Sbjct: 151 VKKERKRSSIHDITTVDATL 170

BLAST of CmaCh06G016580 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator )

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-16
Identity = 41/92 (44.57%), Postives = 61/92 (66.30%), Query Frame = 0

Query: 193 HRVAANNGRVGQSSRMR----IIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQV 252
           H+V     + G+S  +     + WT +EHKLFL+G+  +G G+W++I+   V+T+T TQV
Sbjct: 120 HQVCNKRSQAGRSPELERKKGVPWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQV 179

Query: 253 ASHAQKFFTRQQIPKEQRKRKSIHDIDTVDPE 281
           ASHAQK+F RQ    + ++R SIHDI TV+ E
Sbjct: 180 ASHAQKYFIRQLSGGKDKRRASIHDITTVNLE 211

BLAST of CmaCh06G016580 vs. TAIR 10
Match: AT5G08520.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 1.6e-16
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0

Query: 197 ANNGRVGQSSRMRIIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKFF 256
           A   +  Q  R  I WT DEH+LFL+G+  +G G+W+SI+   V+T+T TQVASHAQK+F
Sbjct: 105 AGKSKSDQERRKGIAWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYF 164

Query: 257 TRQQIPKEQRKRKSIHDIDTV 278
            R     + R+R SIHDI +V
Sbjct: 165 IRLNSMNKDRRRSSIHDITSV 185

BLAST of CmaCh06G016580 vs. TAIR 10
Match: AT1G49010.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 84.0 bits (206), Expect = 2.8e-16
Identity = 58/172 (33.72%), Postives = 87/172 (50.58%), Query Frame = 0

Query: 196 AANNGRVG-----QSSRMRIIWTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVAS 255
           ++N GR G     Q  R  I WT +EH+LFL+G+  FG G+W+SI+   V+++T TQVAS
Sbjct: 115 SSNGGRSGGSRAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVAS 174

Query: 256 HAQKFFTRQQIPKEQRKRKSIHDIDTVDPELLSEVYARLESQPETRTRSRPRPRPRPPP- 315
           HAQK+F R       R+R SIHDI TV+ +  +      + Q      ++P+P+P+P P 
Sbjct: 175 HAQKYFIRLNSMNRDRRRSSIHDITTVNNQAPAVTGGGQQPQVVKHRPAQPQPQPQPQPQ 234

Query: 316 ---TPPLPSLTNYSPLRMDPDPTQPYEQFNNYVPNVEQLPLPSQPEFVHNQN 359
               P +  L  Y    +      P +   + V     LP P      H+ +
Sbjct: 235 QHHPPTMAGLGMYGGAPVGQPIIAPPDHMGSAVGTPVMLPPPMGTHHHHHHH 286

BLAST of CmaCh06G016580 vs. TAIR 10
Match: AT5G01200.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 1.2e-14
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 212 WTVDEHKLFLVGMAIFGSGNWKSIANKVVLTKTHTQVASHAQKFFTRQQIPKEQRKRKSI 271
           WT DEH  FL+G+  +G G+W++IA   V T+T TQVASHAQK+F RQ    + ++R SI
Sbjct: 148 WTEDEHLRFLMGLKKYGKGDWRNIAKSFVTTRTPTQVASHAQKYFLRQLTDGKDKRRSSI 207

Query: 272 HDIDTVD 279
           HDI TV+
Sbjct: 208 HDITTVN 214

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9FNN62.3e-1549.38Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1[more]
B8A9B22.5e-1451.35Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 ... [more]
Q8LH592.5e-1451.35Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=... [more]
Q8S9H76.2e-1339.32Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 ... [more]
Q9FKF94.2e-0929.59Probable transcription factor At5g61620 OS=Arabidopsis thaliana OX=3702 GN=At5g6... [more]
Match NameE-valueIdentityDescription
AT5G04760.19.2e-2058.75Duplicated homeodomain-like superfamily protein [more]
AT5G58900.11.6e-1644.57Homeodomain-like transcriptional regulator [more]
AT5G08520.11.6e-1649.38Duplicated homeodomain-like superfamily protein [more]
AT1G49010.12.8e-1633.72Duplicated homeodomain-like superfamily protein [more]
AT5G01200.11.2e-1453.73Duplicated homeodomain-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 208..258
e-value: 2.1E-4
score: 30.6
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 204..256
score: 6.097918
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 212..256
e-value: 1.9417E-6
score: 42.1774
NoneNo IPR availableGENE3D1.10.10.60coord: 211..261
e-value: 1.7E-13
score: 52.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..361
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 288..332
NoneNo IPR availablePANTHERPTHR44191:SF21TRANSCRIPTION FACTOR SRM1coord: 189..320
NoneNo IPR availablePANTHERPTHR44191TRANSCRIPTION FACTOR KUA1coord: 189..320
IPR006447Myb domain, plantsTIGRFAMTIGR01557TIGR01557coord: 209..259
e-value: 2.4E-12
score: 45.0
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 212..254
e-value: 7.8E-8
score: 32.4
IPR017930Myb domainPROSITEPS51294HTH_MYBcoord: 212..260
score: 12.912199
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 206..260

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G016580.1CmaCh06G016580.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding