Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTGCGTAAATTCGGACCTGATTCCCTCTCTACAGCTGTCCTTTTCTCTCATCATACCCTGCAAAAGTCATCGTTCCCCATTTTTCTTCTTCCTTCCCCCATTTCTTGCGCCTCTCTCTCTATTCTCTGCCGCGTGTTTCTCTACTACTATCCCGTTTCGATTTCTGGTCGTAGTTTGGTTTTCTTGCAATCTACGCCTTGGTTGTTGTTGTGTTCTTCCTCTTCATTTCCACCACTTGATTCGTAATGCTTGCTTAAGTCGAGGGCTTTTGATTTGGTTTGATTCCTTGAATACCCATTTTGGAGCTTTGGTTGAATGTGGAGAGCTGTGCTTGTTTGATGAAAAAATTTGTTTAGTTGCTTTACAAGGGTGTTTTTAGTTCATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTTCCCCCATCGAGTCGCTACTCGAGTCTTTCACCAACTGCAAGTAGTTTCAATGGAAAATCCGAGACTGCTTCGTGTTCAATGTCACTTCCTCCAATGGCTCCGAGTCCTAATTCTTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGTGATTCCAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATGGGTCATCGACGTGCCCATTCCGAGATTCTGACTCTTCCTGATGATATTTGTTTTGACAGTGACCTTGGTGTCATTGGTGGTGCTGACGGGCCTTCCTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCCTCTGCTACATCTGCAATGCAAGTTGGGGAGTCATCTTCCGCTGCTGTAGAGGCAAGATCAACTCCTACTTCAGGAATTGGAGCTGCAACTTCAAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTCAGGCACCAGCACAGCCATTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCGGGGTCTGAAGAAGTCTCTGCCGCTGATTCCAAGAAAGCTATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGTATAAATCCTTCAACTTCGTTGGAAGCTCTATCTTAGTTGCAAGAAATGCATGACGCTATGAAGTGATTTTGTCAATTTTTGACAATAAGTTTAGTGTAAGCAACTATTATCATTGCAACTTATTACTAGTGAATAAACTTAAATTTTGGTAGATCATGCTGTACATCATTGCGCTCTAATGAATGAAAATCTTAAATTTTGGTAGATAGAAGCCAAATCATTTGTCTTGGTTGTGTATGTTCTTTGTTCTTGTAGTATATCTTCTGATGAAATTACTTCATTTTCCATCAAGATAAAATAGTTTGTCTATCAAGACTTTTTTTGATGAATTTTGGCTCTAAGAAAGTGGAACCCAATCATTTGTGTCGAGTTCTGATGCATCATTTTACATTTAAATGGTGTTGAGTTCATTTCATTTACATGGATTGTGTTTGTGTGTTCTCTTAGAGCTTGAAGAGCCTCGAGCCCTTTTTTTTTTCCATGTTTACTACCTCTTTCTCTCCATTTAAAGCCTGTTTTCTCCAACTTTTCCATGTTTCTGATTATTGCTTCTGTACCCTCCAATTATTATTTTTATTTTGTTCCCGATCCAAAAAAAAAAAAAAAAAGGAAAATTTGTTCATAATCCCTCTGTTGTGCATTGCATAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAAGCAACCTCATTATCTGCTCAATTAACCCTCTTGCAGGTGGTTATCACAAAATTAATCGTGTTTATCATATTTTTGGATGTGTAATTTATGTTTTCATATGATTTTCATTCTATCTGCATTTGAATTTATATAAAATATCTTGCTTTATGTATTGCCTCCTTATTATCAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTTAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGGTAAGGACCTCTGTAATCTTTGTTTTTTTTGGTGACTGCACATTATAATTGCCTTCTCTTAGCTTTTTATGTAATCTCTCTGTTTTGTAATTAACGAAGGTACTTGTTGGAAGATAATTTTATATACATTTCTTAAATACATAGAGAGTTGCGTTCCTTGGAGTCTCTGTCCTATGACATAGAGATTTTTCGGTTAAGATATGGCCTACGGGTCAGGGGTTTAGTACAAGTATGACCCGAGCGAAGATTTATAGAGACATTGTAAGAGTTGATACAGAAGAGAAAAGTTGATTAGAAGAAGCGTCAGATTAGAACTTGTTAATGATTATAGGATATGATGTGTTTTGTTGAGAGAGACAAAAATTGGCAGCCTATGAGATTCTTGACACAGTTTAGTGGGATGGTTGTAGGAAATTGATCAATAGACATCTGAGGAAGGATTACTTTATGCAGGAAGATGAGAACTTTATTTGGTGATTGTGAAGTGGGAAGATAAGGTTCTTCAGATATTAGAATCTCGCTTCGAGTTTCATTTTGACCTGTATATTGGATTGCGCTCGTGCTTCTAGTGAATATTGAAATAGTTAATGACCGGGCTTCTCTTTGAGTGGACCAACACTCTGAAAGGAGCTGAGCCAGTTTTCTGGTTTTTATTGCGCGTCTCAATTAGTTTATTATTACCGGTTAAACCAATGTACTCAATTTCAAGGTTCAACTGCAAGGTAATCTTTAAACTGATGGGTTTCTTGCTTATTGTCACAATCCTCATTTGCATTAAAGATGTGACACTAGTGTAGATGTTGAAGGAACTTGGATCGGCTATGTAGGAGGCACAAGCACATGGCTTGTCTTACCTTGTTGGTTACTATCTTGAAAACATTGGGTAATGCATGTCGATATTTGGAGGGATTAAGTAATTGGAAACTCGAGGTTTAGAAATGTTTGTAGAATTAAGCAATTGCCATTTTGTTTCTTTGTTTGCGTAGATATTATGGATCAGCTACAATCAACCATATGCTTAAAGAAAACATTTGGCAGCTCTCTCTTGCTGAATAGATCATGCTTGATAGATATCTTATATTGGTTTACACATGGTATCTGGTTCCAGTTAAGAGGTAGTCTGTTGTAGAAATTGTCTTTGAGACTGATTGATCGAGGCCTGATCTCTAATTTCCGAACATCGTGCTTTTAGATTGTTATATTTTCTCGTCAAAGTGAGCATTGGTCACATGTTTGACATATACCCTCGATCAAGAGGTCAAAGTGAGCATTGCTCTCTACGGTTTTTGGACTCAAACAAATAGGCGGTTATATTTTCTTCATGTGAGGCTAAAAATTTATGTGCCTCTACAAATTAAAAGACATTACATTGGTAACTGGCATTTAGGAACAACAATGATGTGAGATCCCACGTCGGTTGGAGAGGAGAACGAAGCATTCTTTATAAGGGTGTGAAAATCTTTCCCTAACAGACGTGAACACTAAAGGGAAGCCTGAAAGGGAAAGTTCAAAGAGAACAATATCTGCTAGCGGTGGACTTTAGCCATTACAATTTACCATACTGTATTAGATTTTGACCCCTTGACATGATAGAAGATTTTTTGAATTAGGGGTAGAATTGATGGGAAACCGTTCTTAATTGTGTCATGAAGACGATTCAATAATTTTCTCATGGGGCTCCATCTTTATTGGCATCTCTTTTGACAGCTCTAAATGAAGCATTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAATTTTGCATCCTTTGGAGCTAGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTGACTGCTCAGCAATTTCAGCAACTACAAATCCACTCACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACATTTTCAGTACCATCAGCTACATCAGCTTCAGCAGCAACCAACGGGAGACATCAAAATGAAAGGACCGACATCTTCTCCAAGTTCGAAAGACAACACATCAGATACGTCCTCTCCCTCTTGTTGAAAAAGATAGGCTGTGAACCTACTGGTTCTTAAAGCTTTTGATGGTTAGCTATCAGAAACTTAGCTGCATTTGTTATCCAAATACCACATTTCTGGCCTCCCTACTACAATCTTTGGGTGTTCCCCTCTCCATAAGCATTTTGTTTTCCTTCCCTGTGTCTGTTAATTTATGTGTAATGTTCATTTGTTGTAGACAGACATGTTGTAGTTGCTTTGTTGTTAGATTGTGGATATCACAGTTTCTCTTATTATTTGTAGCTTAATTTTCTTTTCAAGGTTTATTATTATTAACCTTTTTCTTCCTCCACTCATATTCTTTATTTATTTTTTATTTTTTTGTAAAATAAATGTTGTTCTTAATATATGGTTTGGAGATACTCTCATCATCTCCTTCCGATTATATTATAAGTTTCGGCCATATAAGTTTCGTCTCTCAATTTTTGAGTATGTGTGTCCATTTGGTATTGTATAGAATTTTCAAGTTTTTGTCCATTTGGATTTTCAAGTTTTTTAAATCTTCAATTTTGTGTATAATAGTATGCTGGTCTATGAGACTATATTTAAAATATACGAACTATCTATAACTCGAAGTTTAAAGTTCATGGTCTCATCAGGCATGTTTACCGTTCATAGGCTAATAGGTGGGCCATCCATGAACTTGGGGTTTAACTCGAGTCATTTCTCTTCTTTCCTTGCTTGGTGACTCAGTTCTCGTTTTGTTTTGGTCATTTTGATTTGATTTATTTGGCTCGTAGTTTATATGAGTTTTCAACCCGTCTGTCGTGGTTCAATTTCACCTGTAAACACCTTTTATGTAGTTTTACCAGAATAAGAATAAAATGTGCTACATCCATGTGGCTTCCGTTTCTTTTCCTGTAGATAGTTGA
mRNA sequence
GATTGCGTAAATTCGGACCTGATTCCCTCTCTACAGCTGTCCTTTTCTCTCATCATACCCTGCAAAAGTCATCGTTCCCCATTTTTCTTCTTCCTTCCCCCATTTCTTGCGCCTCTCTCTCTATTCTCTGCCGCGTGTTTCTCTACTACTATCCCGTTTCGATTTCTGGTCGTAGTTTGGTTTTCTTGCAATCTACGCCTTGGTTGTTGTTGTGTTCTTCCTCTTCATTTCCACCACTTGATTCGTAATGCTTGCTTAAGTCGAGGGCTTTTGATTTGGTTTGATTCCTTGAATACCCATTTTGGAGCTTTGGTTGAATGTGGAGAGCTGTGCTTGTTTGATGAAAAAATTTGTTTAGTTGCTTTACAAGGGTGTTTTTAGTTCATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTTCCCCCATCGAGTCGCTACTCGAGTCTTTCACCAACTGCAAGTAGTTTCAATGGAAAATCCGAGACTGCTTCGTGTTCAATGTCACTTCCTCCAATGGCTCCGAGTCCTAATTCTTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGTGATTCCAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATGGGTCATCGACGTGCCCATTCCGAGATTCTGACTCTTCCTGATGATATTTGTTTTGACAGTGACCTTGGTGTCATTGGTGGTGCTGACGGGCCTTCCTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCCTCTGCTACATCTGCAATGCAAGTTGGGGAGTCATCTTCCGCTGCTGTAGAGGCAAGATCAACTCCTACTTCAGGAATTGGAGCTGCAACTTCAAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTCAGGCACCAGCACAGCCATTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCGGGGTCTGAAGAAGTCTCTGCCGCTGATTCCAAGAAAGCTATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAAGCAACCTCATTATCTGCTCAATTAACCCTCTTGCAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTTAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCATTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAATTTTGCATCCTTTGGAGCTAGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTGACTGCTCAGCAATTTCAGCAACTACAAATCCACTCACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACATTTTCAGTACCATCAGCTACATCAGCTTCAGCAGCAACCAACGGGAGACATCAAAATGAAAGGACCGACATCTTCTCCAAATAGTTGA
Coding sequence (CDS)
ATGGAGAAGGACAAACCCCAAAGCCATTCTGGTGGATTTCTTCCCCCATCGAGTCGCTACTCGAGTCTTTCACCAACTGCAAGTAGTTTCAATGGAAAATCCGAGACTGCTTCGTGTTCAATGTCACTTCCTCCAATGGCTCCGAGTCCTAATTCTTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGTGATTCCAATCGGTTCAGCCATGATATTAGTCGGATGCCTGATAACCCGCCGAGAAATATGGGTCATCGACGTGCCCATTCCGAGATTCTGACTCTTCCTGATGATATTTGTTTTGACAGTGACCTTGGTGTCATTGGTGGTGCTGACGGGCCTTCCTTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTCAATTCTTCCTCTGCTACATCTGCAATGCAAGTTGGGGAGTCATCTTCCGCTGCTGTAGAGGCAAGATCAACTCCTACTTCAGGAATTGGAGCTGCAACTTCAAAGGATGATGCTGCTGTTGGTTTGAAGGAGAGGCCAAGAGTCAGGCACCAGCACAGCCATTCCATGGATGGCTTGTCAACCATAAAGCCTGAGATGCTTGTCTCGGGGTCTGAAGAAGTCTCTGCCGCTGATTCCAAGAAAGCTATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTAATTGACCCCAAACGTGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAAGCAACCTCATTATCTGCTCAATTAACCCTCTTGCAGAGAGACACAAACGGTCTTACTGCTGAGAACAGTGAACTTAAGCTGAGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTCTAAATGAAGCATTGAAAGAGGAAATTCAACATTTGAAAATATTGACTGGCCAAGCAATCCCAAATGGTGGATCAATGTCAAATTTTGCATCCTTTGGAGCTAGCCAACCATTTTACCCAAACAATCAAGCAATGCACACTTTGTTGACTGCTCAGCAATTTCAGCAACTACAAATCCACTCACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAGCAACATTTTCAGTACCATCAGCTACATCAGCTTCAGCAGCAACCAACGGGAGACATCAAAATGAAAGGACCGACATCTTCTCCAAATAGTTGA
Protein sequence
MEKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGASQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYHQLHQLQQQPTGDIKMKGPTSSPNS
Homology
BLAST of CmaCh06G016160 vs. ExPASy Swiss-Prot
Match:
Q04088 (Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 PE=2 SV=1)
HSP 1 Score: 412.9 bits (1060), Expect = 4.2e-114
Identity = 256/368 (69.57%), Postives = 289/368 (78.53%), Query Frame = 0
Query: 33 KSETASCSMSLPPMAPSPNS---SDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRA 92
KS C LPP +PS S++G G G SD+NR SHDISRM DNPP+ +GHRRA
Sbjct: 5 KSPAPPCG-GLPPPSPSGRCSAFSEAGPIGHG--SDANRMSHDISRMLDNPPKKIGHRRA 64
Query: 93 HSEILTLPDDICFDSDLGVIG-GADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGE 152
HSEILTLPDD+ FDSDLGV+G ADG SFSD+TEEDLLSMYLDMDKFN SSATS+ QVGE
Sbjct: 65 HSEILTLPDDLSFDSDLGVVGNAADGASFSDETEEDLLSMYLDMDKFN-SSATSSAQVGE 124
Query: 153 SSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPEMLVSGSEE 212
S A + + +G G+ ++ + L ERPR+RHQHS SMDG I EML+SG+E+
Sbjct: 125 PSGTAWKNETMMQTGTGSTSNPQNTVNSLGERPRIRHQHSQSMDGSMNIN-EMLMSGNED 184
Query: 213 VSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 272
SA D+KK+MSATKLAELALIDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTE
Sbjct: 185 DSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTE 244
Query: 273 ATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQA 332
AT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LNEALKEEIQHLK+LTGQ
Sbjct: 245 ATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQV 304
Query: 333 IPNGGSMSNFASFGAS-QPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYH 392
P S N+ SFG++ Q FY NNQ+M T+L A+QFQQLQIHSQ+QQQQQQQQQQ Q
Sbjct: 305 AP---SALNYGSFGSNQQQFYSNNQSMQTILAAKQFQQLQIHSQKQQQQQQQQQQQHQQQ 364
Query: 393 QLHQLQQQ 396
Q Q Q Q
Sbjct: 365 QQQQQQYQ 364
BLAST of CmaCh06G016160 vs. ExPASy Swiss-Prot
Match:
Q69IL4 (Transcription factor RF2a OS=Oryza sativa subsp. japonica OX=39947 GN=RF2a PE=1 SV=1)
HSP 1 Score: 326.2 bits (835), Expect = 5.2e-88
Identity = 210/346 (60.69%), Postives = 243/346 (70.23%), Query Frame = 0
Query: 71 HDISRMPDNPPRNMGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYL 130
+DISRMPD P RN GHRRAHSEIL+LP+D+ DL GG DGPS SD+ +E+L SM+L
Sbjct: 35 YDISRMPDFPTRNPGHRRAHSEILSLPEDL----DLCAAGGGDGPSLSDENDEELFSMFL 94
Query: 131 DMDKFNSSSATSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHS 190
D++K NS+ S+ ESSSA GAA + AA R +HQHS S
Sbjct: 95 DVEKLNSTCGASSEAEAESSSA------------GAAAAVAAAAAAAAHGARPKHQHSLS 154
Query: 191 MDGLSTIKPEMLVS---GSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARS 250
MD +IK E LV G+E +S+A++KKA+SA KLAELAL+DPKRAKRIWANRQSAARS
Sbjct: 155 MDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARS 214
Query: 251 KERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQ 310
KERKMRYIAELERKVQTLQTEAT+LSAQL LLQRDT+GLT ENSELKLRLQTMEQQVHLQ
Sbjct: 215 KERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQ 274
Query: 311 DALNEALKEEIQHLKILTGQAIPNGGSMSNFA----SFGASQPFYPNNQAMHTLLTAQQF 370
DALN+ LK E+Q LK+ TGQ GG M NF FG +Q + NNQAM ++L A Q
Sbjct: 275 DALNDTLKSEVQRLKVATGQMANGGGMMMNFGGMPHQFGGNQQMFQNNQAMQSMLAAHQL 334
Query: 371 QQLQIHSQQQQQQ----QQQQQQHFQYHQLHQLQQQPTGDIKMKGP 406
QQLQ+H Q QQQQ Q QQQQ Q QL QQ D+KMK P
Sbjct: 335 QQLQLHPQAQQQQVLHPQHQQQQPLHPLQAQQL-QQAARDLKMKSP 363
BLAST of CmaCh06G016160 vs. ExPASy Swiss-Prot
Match:
O22873 (bZIP transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=BZIP18 PE=1 SV=1)
HSP 1 Score: 174.9 bits (442), Expect = 1.9e-42
Identity = 145/335 (43.28%), Postives = 183/335 (54.63%), Query Frame = 0
Query: 80 PPRNMGHRRAHSEI-LTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSS 139
P R HRRAHSE+ LP+D+ GG D +E+DL Y+D++K S
Sbjct: 28 PVRGPYHRRAHSEVQFRLPEDLDLSEP---FGGFD----ELGSEDDLFCSYMDIEKLGSG 87
Query: 140 SATSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIK 199
S +++ G S+ + S G A S R RH+HS S+DG ST++
Sbjct: 88 SGSASDSAGPSAPRSDNPFSAENGGAEAGNS------------RPRHRHSLSVDGSSTLE 147
Query: 200 PEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAEL 259
+ ++KKAM+ KLAEL ++DPKRAKRI ANRQSAARSKERK RYI EL
Sbjct: 148 ------------SIEAKKAMAPDKLAELWVVDPKRAKRIIANRQSAARSKERKARYILEL 207
Query: 260 ERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEI 319
ERKVQTLQTEAT+LSAQL+L QRDT GL++EN+ELKLRLQ MEQQ L+DALNE LK+E+
Sbjct: 208 ERKVQTLQTEATTLSAQLSLFQRDTTGLSSENTELKLRLQVMEQQAKLRDALNEQLKKEV 267
Query: 320 QHLKILTGQAIPNGGSMSNFASFGASQPFYPNNQAMHTLLTAQQFQQ--LQIHSQQQQQQ 379
+ LK TG+ P N M + QQ QQ Q H QQQ
Sbjct: 268 ERLKFATGEVSPADA----------------YNLGMAHMQYQQQPQQSFFQHHHQQQTDA 310
Query: 380 QQQQQQHFQYHQLHQLQQQPTGDIKMKGPTSSPNS 412
Q QQ Q+H QP + T+ P +
Sbjct: 328 QNLQQMTHQFHLF-----QPNNNQNQSSRTNPPTA 310
BLAST of CmaCh06G016160 vs. ExPASy Swiss-Prot
Match:
Q6S4P4 (Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 SV=2)
HSP 1 Score: 169.1 bits (427), Expect = 1.1e-40
Identity = 142/337 (42.14%), Postives = 181/337 (53.71%), Query Frame = 0
Query: 82 RNMGHRRAHSEI-LTLPDDICFDSDLGVIGGADGPSFSDDTEEDLLSMYLDMDKFNSSSA 141
R HRRA SE+ LPDD+ DLG GG G +E+DL S ++D++K +S A
Sbjct: 13 RGAHHRRARSEVAFRLPDDL----DLG--GGGAGAFDEIGSEDDLFSTFMDIEKISSGPA 72
Query: 142 TSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPE 201
A S D A PR +H+HS S+DG
Sbjct: 73 ------------------------AAGGSDRDRAAETSSPPRPKHRHSSSVDGSGFFAAA 132
Query: 202 MLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELER 261
+ + ++KKAM+ +L+ELA IDPKRAKRI ANRQSAARSKERK RYI ELER
Sbjct: 133 RKDAAASLAEVMEAKKAMTPEQLSELAAIDPKRAKRILANRQSAARSKERKARYITELER 192
Query: 262 KVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQH 321
KVQTLQTEAT+LSAQLTL QRDT GL+AEN+ELK+RLQ MEQQ L+DALN+ALK+E++
Sbjct: 193 KVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELER 252
Query: 322 LKILTGQAIPNGGSMS-NFASFGASQPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQ 381
LK+ TG+ + + S + PF+P AQ Q Q Q Q
Sbjct: 253 LKLATGEMTNSNETYSMGLQHVPYNTPFFP---------LAQHNAARQNGGTQLPPQFQP 310
Query: 382 QQQHFQYHQLHQ-------LQQQPTGDIK----MKGP 406
+ + H L +QQ P G ++ KGP
Sbjct: 313 PRPNVPNHMLSHPNGLQDIMQQDPLGRLQGLDISKGP 310
BLAST of CmaCh06G016160 vs. ExPASy Swiss-Prot
Match:
Q8H1F0 (bZIP transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=BZIP29 PE=2 SV=1)
HSP 1 Score: 151.8 bits (382), Expect = 1.7e-35
Identity = 150/402 (37.31%), Postives = 191/402 (47.51%), Query Frame = 0
Query: 22 SLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGRGMSSDSNRFSHDISRMPDNPP 81
SL P S S+ S S+P + P P F G +D ++ + + +
Sbjct: 162 SLPPRKSHRRSNSDIPSGFNSMPLIPPRPLER---SFSGGECADWSKSNPFVKKESSCER 221
Query: 82 RNMGHRRAHSEILTLPDDICFDSDLGVIGG--ADGPSFSDDTEEDLLSMYLDMDKFNSSS 141
+G R A ++ + ++ ++ V+ AD ++ +D+ S K N S
Sbjct: 222 EGVGEREAMDDLFSAYMNL---ENIDVLNSSEADDSKNGNENRDDMESSRASGTKTNGSD 281
Query: 142 ATSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGL----- 201
GESSS A + S S A G P RH S S+D
Sbjct: 282 TE-----GESSSVNESANNNMNSSGEKRESVKRRAAGGDIAPTTRHYRSVSVDSCFMEKL 341
Query: 202 -----------------STIKPEMLVSGSE-----------EVSAADSKKAMSATKLAEL 261
+ P V G+ E +AA+ KK M+ KLAE+
Sbjct: 342 SFGDESLKPPPSPGSMSRKVSPTNSVDGNSGAAFSIEFNNGEFTAAEMKKIMANDKLAEM 401
Query: 262 ALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL 321
A+ DPKR KRI ANRQSAARSKERKMRYI ELE KVQTLQTEAT+LSAQLTLLQRD GL
Sbjct: 402 AMSDPKRVKRILANRQSAARSKERKMRYIVELEHKVQTLQTEATTLSAQLTLLQRDMMGL 461
Query: 322 TAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGASQP 381
T +N+ELK RLQ MEQQ L+DALNEAL E+Q LK+ G++ N S S
Sbjct: 462 TNQNNELKFRLQAMEQQARLRDALNEALNGEVQRLKLAIGESSQNESERSKMQS------ 521
Query: 382 FYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYHQ 389
L A+ FQQL I +QQ QQ QQQ H Q HQ
Sbjct: 522 -----------LNAEMFQQLNISQLRQQPQQMQQQSHQQNHQ 535
BLAST of CmaCh06G016160 vs. TAIR 10
Match:
AT1G06070.1 (Basic-leucine zipper (bZIP) transcription factor family protein )
HSP 1 Score: 462.2 bits (1188), Expect = 4.3e-130
Identity = 281/425 (66.12%), Postives = 319/425 (75.06%), Query Frame = 0
Query: 2 EKDKPQSHSGGFLPPSSRYSSLSPTASSFNGKSETASCSMSLPPMAPSPNSSDSGQFGRG 61
EK SGG PPS RYS+ SP SSF K+E+ S PP+ PS ++
Sbjct: 4 EKSPAPPPSGGLPPPSGRYSAFSPNGSSFAMKAES-----SFPPLTPSGSN--------- 63
Query: 62 MSSDSNRFSHDISRMPDNPPRNMGHRRAHSEILTLPDDICFDSDLGVIGGADGPSFSDDT 121
SSD+NRFSHDISRMPDNPP+N+GHRRAHSEILTLPDD+ FDSDLGV+G ADGPSFSDDT
Sbjct: 64 -SSDANRFSHDISRMPDNPPKNLGHRRAHSEILTLPDDLSFDSDLGVVGAADGPSFSDDT 123
Query: 122 EEDLLSMYLDMDKFNSSSATSAMQVGESSSAAVEARSTPTSGIGAATSKDDAAVGLKERP 181
+EDLL MYLDM+KFN SSATS Q+GE S TS + + ERP
Sbjct: 124 DEDLLYMYLDMEKFN-SSATSTSQMGEPSEPTWRNELASTSNLQSTPGSS------SERP 183
Query: 182 RVRHQHSHSMDGLSTIKPEMLVSGSEEVSAADSKKAMSATKLAELALIDPKRAKRIWANR 241
R+RHQHS SMDG +TIKPEML+SG+E+VS DSKKA+SA KL+ELALIDPKRAKRIWANR
Sbjct: 184 RIRHQHSQSMDGSTTIKPEMLMSGNEDVSGVDSKKAISAAKLSELALIDPKRAKRIWANR 243
Query: 242 QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTME 301
QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGL EN+ELKLR+QTME
Sbjct: 244 QSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLGVENNELKLRVQTME 303
Query: 302 QQVHLQDALNEALKEEIQHLKILTGQAIPNGGSMSNFASFGASQPFYPNNQAMHTLLTAQ 361
QQVHLQDALN+ALKEE+QHLK+LTGQ NG SM N+ SFG++Q FYPNNQ+MHT+L AQ
Sbjct: 304 QQVHLQDALNDALKEEVQHLKVLTGQGPSNGTSM-NYGSFGSNQQFYPNNQSMHTILAAQ 363
Query: 362 QFQQLQIHSQ---------QQQQQQQQQQQHFQYHQLHQLQQ--------QPTGDIKMKG 410
Q QQLQI SQ QQQQQQQQQQ HFQ QL+QLQQ Q +G +++
Sbjct: 364 QLQQLQIQSQKQQQQQQQHQQQQQQQQQQFHFQQQQLYQLQQQQRLQQQEQQSGASELRR 405
BLAST of CmaCh06G016160 vs. TAIR 10
Match:
AT2G31370.3 (Basic-leucine zipper (bZIP) transcription factor family protein )
HSP 1 Score: 412.9 bits (1060), Expect = 3.0e-115
Identity = 256/368 (69.57%), Postives = 289/368 (78.53%), Query Frame = 0
Query: 33 KSETASCSMSLPPMAPSPNS---SDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRA 92
KS C LPP +PS S++G G G SD+NR SHDISRM DNPP+ +GHRRA
Sbjct: 5 KSPAPPCG-GLPPPSPSGRCSAFSEAGPIGHG--SDANRMSHDISRMLDNPPKKIGHRRA 64
Query: 93 HSEILTLPDDICFDSDLGVIG-GADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGE 152
HSEILTLPDD+ FDSDLGV+G ADG SFSD+TEEDLLSMYLDMDKFN SSATS+ QVGE
Sbjct: 65 HSEILTLPDDLSFDSDLGVVGNAADGASFSDETEEDLLSMYLDMDKFN-SSATSSAQVGE 124
Query: 153 SSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPEMLVSGSEE 212
S A + + +G G+ ++ + L ERPR+RHQHS SMDG I EML+SG+E+
Sbjct: 125 PSGTAWKNETMMQTGTGSTSNPQNTVNSLGERPRIRHQHSQSMDGSMNIN-EMLMSGNED 184
Query: 213 VSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 272
SA D+KK+MSATKLAELALIDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTE
Sbjct: 185 DSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTE 244
Query: 273 ATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQA 332
AT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LNEALKEEIQHLK+LTGQ
Sbjct: 245 ATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQV 304
Query: 333 IPNGGSMSNFASFGAS-QPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYH 392
P S N+ SFG++ Q FY NNQ+M T+L A+QFQQLQIHSQ+QQQQQQQQQQ Q
Sbjct: 305 AP---SALNYGSFGSNQQQFYSNNQSMQTILAAKQFQQLQIHSQKQQQQQQQQQQQHQQQ 364
Query: 393 QLHQLQQQ 396
Q Q Q Q
Sbjct: 365 QQQQQQYQ 364
BLAST of CmaCh06G016160 vs. TAIR 10
Match:
AT2G31370.2 (Basic-leucine zipper (bZIP) transcription factor family protein )
HSP 1 Score: 412.9 bits (1060), Expect = 3.0e-115
Identity = 256/368 (69.57%), Postives = 289/368 (78.53%), Query Frame = 0
Query: 33 KSETASCSMSLPPMAPSPNS---SDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRA 92
KS C LPP +PS S++G G G SD+NR SHDISRM DNPP+ +GHRRA
Sbjct: 5 KSPAPPCG-GLPPPSPSGRCSAFSEAGPIGHG--SDANRMSHDISRMLDNPPKKIGHRRA 64
Query: 93 HSEILTLPDDICFDSDLGVIG-GADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGE 152
HSEILTLPDD+ FDSDLGV+G ADG SFSD+TEEDLLSMYLDMDKFN SSATS+ QVGE
Sbjct: 65 HSEILTLPDDLSFDSDLGVVGNAADGASFSDETEEDLLSMYLDMDKFN-SSATSSAQVGE 124
Query: 153 SSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPEMLVSGSEE 212
S A + + +G G+ ++ + L ERPR+RHQHS SMDG I EML+SG+E+
Sbjct: 125 PSGTAWKNETMMQTGTGSTSNPQNTVNSLGERPRIRHQHSQSMDGSMNIN-EMLMSGNED 184
Query: 213 VSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 272
SA D+KK+MSATKLAELALIDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTE
Sbjct: 185 DSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTE 244
Query: 273 ATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQA 332
AT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LNEALKEEIQHLK+LTGQ
Sbjct: 245 ATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQV 304
Query: 333 IPNGGSMSNFASFGAS-QPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYH 392
P S N+ SFG++ Q FY NNQ+M T+L A+QFQQLQIHSQ+QQQQQQQQQQ Q
Sbjct: 305 AP---SALNYGSFGSNQQQFYSNNQSMQTILAAKQFQQLQIHSQKQQQQQQQQQQQHQQQ 364
Query: 393 QLHQLQQQ 396
Q Q Q Q
Sbjct: 365 QQQQQQYQ 364
BLAST of CmaCh06G016160 vs. TAIR 10
Match:
AT2G31370.1 (Basic-leucine zipper (bZIP) transcription factor family protein )
HSP 1 Score: 412.9 bits (1060), Expect = 3.0e-115
Identity = 256/368 (69.57%), Postives = 289/368 (78.53%), Query Frame = 0
Query: 33 KSETASCSMSLPPMAPSPNS---SDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRA 92
KS C LPP +PS S++G G G SD+NR SHDISRM DNPP+ +GHRRA
Sbjct: 5 KSPAPPCG-GLPPPSPSGRCSAFSEAGPIGHG--SDANRMSHDISRMLDNPPKKIGHRRA 64
Query: 93 HSEILTLPDDICFDSDLGVIG-GADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGE 152
HSEILTLPDD+ FDSDLGV+G ADG SFSD+TEEDLLSMYLDMDKFN SSATS+ QVGE
Sbjct: 65 HSEILTLPDDLSFDSDLGVVGNAADGASFSDETEEDLLSMYLDMDKFN-SSATSSAQVGE 124
Query: 153 SSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPEMLVSGSEE 212
S A + + +G G+ ++ + L ERPR+RHQHS SMDG I EML+SG+E+
Sbjct: 125 PSGTAWKNETMMQTGTGSTSNPQNTVNSLGERPRIRHQHSQSMDGSMNIN-EMLMSGNED 184
Query: 213 VSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 272
SA D+KK+MSATKLAELALIDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTE
Sbjct: 185 DSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTE 244
Query: 273 ATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQA 332
AT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LNEALKEEIQHLK+LTGQ
Sbjct: 245 ATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQV 304
Query: 333 IPNGGSMSNFASFGAS-QPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYH 392
P S N+ SFG++ Q FY NNQ+M T+L A+QFQQLQIHSQ+QQQQQQQQQQ Q
Sbjct: 305 AP---SALNYGSFGSNQQQFYSNNQSMQTILAAKQFQQLQIHSQKQQQQQQQQQQQHQQQ 364
Query: 393 QLHQLQQQ 396
Q Q Q Q
Sbjct: 365 QQQQQQYQ 364
BLAST of CmaCh06G016160 vs. TAIR 10
Match:
AT2G31370.4 (Basic-leucine zipper (bZIP) transcription factor family protein )
HSP 1 Score: 412.9 bits (1060), Expect = 3.0e-115
Identity = 256/368 (69.57%), Postives = 289/368 (78.53%), Query Frame = 0
Query: 33 KSETASCSMSLPPMAPSPNS---SDSGQFGRGMSSDSNRFSHDISRMPDNPPRNMGHRRA 92
KS C LPP +PS S++G G G SD+NR SHDISRM DNPP+ +GHRRA
Sbjct: 5 KSPAPPCG-GLPPPSPSGRCSAFSEAGPIGHG--SDANRMSHDISRMLDNPPKKIGHRRA 64
Query: 93 HSEILTLPDDICFDSDLGVIG-GADGPSFSDDTEEDLLSMYLDMDKFNSSSATSAMQVGE 152
HSEILTLPDD+ FDSDLGV+G ADG SFSD+TEEDLLSMYLDMDKFN SSATS+ QVGE
Sbjct: 65 HSEILTLPDDLSFDSDLGVVGNAADGASFSDETEEDLLSMYLDMDKFN-SSATSSAQVGE 124
Query: 153 SSSAAVEARSTPTSGIGAATSKDDAAVGLKERPRVRHQHSHSMDGLSTIKPEMLVSGSEE 212
S A + + +G G+ ++ + L ERPR+RHQHS SMDG I EML+SG+E+
Sbjct: 125 PSGTAWKNETMMQTGTGSTSNPQNTVNSLGERPRIRHQHSQSMDGSMNIN-EMLMSGNED 184
Query: 213 VSAADSKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTE 272
SA D+KK+MSATKLAELALIDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTE
Sbjct: 185 DSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTE 244
Query: 273 ATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKILTGQA 332
AT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LNEALKEEIQHLK+LTGQ
Sbjct: 245 ATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQV 304
Query: 333 IPNGGSMSNFASFGAS-QPFYPNNQAMHTLLTAQQFQQLQIHSQQQQQQQQQQQQHFQYH 392
P S N+ SFG++ Q FY NNQ+M T+L A+QFQQLQIHSQ+QQQQQQQQQQ Q
Sbjct: 305 AP---SALNYGSFGSNQQQFYSNNQSMQTILAAKQFQQLQIHSQKQQQQQQQQQQQHQQQ 364
Query: 393 QLHQLQQQ 396
Q Q Q Q
Sbjct: 365 QQQQQQYQ 364
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q04088 | 4.2e-114 | 69.57 | Probable transcription factor PosF21 OS=Arabidopsis thaliana OX=3702 GN=POSF21 P... | [more] |
Q69IL4 | 5.2e-88 | 60.69 | Transcription factor RF2a OS=Oryza sativa subsp. japonica OX=39947 GN=RF2a PE=1 ... | [more] |
O22873 | 1.9e-42 | 43.28 | bZIP transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=BZIP18 PE=1 SV=1 | [more] |
Q6S4P4 | 1.1e-40 | 42.14 | Transcription factor RF2b OS=Oryza sativa subsp. japonica OX=39947 GN=RF2b PE=1 ... | [more] |
Q8H1F0 | 1.7e-35 | 37.31 | bZIP transcription factor 29 OS=Arabidopsis thaliana OX=3702 GN=BZIP29 PE=2 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT1G06070.1 | 4.3e-130 | 66.12 | Basic-leucine zipper (bZIP) transcription factor family protein | [more] |
AT2G31370.3 | 3.0e-115 | 69.57 | Basic-leucine zipper (bZIP) transcription factor family protein | [more] |
AT2G31370.2 | 3.0e-115 | 69.57 | Basic-leucine zipper (bZIP) transcription factor family protein | [more] |
AT2G31370.1 | 3.0e-115 | 69.57 | Basic-leucine zipper (bZIP) transcription factor family protein | [more] |
AT2G31370.4 | 3.0e-115 | 69.57 | Basic-leucine zipper (bZIP) transcription factor family protein | [more] |