CmaCh06G015940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G015940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	SsrA-binding protein
Location	Cma_Chr06: 9938486 .. 9939077 (-)
RNA-Seq Expression	CmaCh06G015940
Synteny	CmaCh06G015940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTCTACGTGCATCATCGTTCTCGTTGGTAATGGCTTCGTGGAAGAAAACCATAATTTCTCCTATTAGAAAGGCTTGCACCATCTTCCACCAACACCCGAGAGACCTCAAGAAGTCCCCCTCCGACTCTGACTTAGGTGAGCTCTCGGGTTTTCTTTTGAATTTTCAACAACGGAGCAAAAAGAAAGAAAACGGTCTTATTTTTAGTTTCTTTTGTAGAACAAGACAAGCGAGTGAGCGTGAGAGACCTACAAGGAGAGGTGTTGGCTTGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACCAACTCTACTACTACGGTCACCAACGCCACCTCCACCGTCTATAATGTGTCTTCTTAACCATCGTCGTGGTCACCGTTGTCTCGGCCGTGGCCAAAAGATTGTAGAAAACTCTTTTTCTCTATTTCTCGGTGAGTTATGATTTCGTCATGTTTATAGGGAATGAATAAATCCCCATGATTTGAAGAAGCTCTTAATCATGGTTATTACTCTTAGTTAATGCAAACATTAAATATATTTCCTCCGGTAAATGGAACGGGCAAGTATTTTGATTTAGAG

mRNA sequence

CGTCTACGTGCATCATCGTTCTCGTTGGTAATGGCTTCGTGGAAGAAAACCATAATTTCTCCTATTAGAAAGGCTTGCACCATCTTCCACCAACACCCGAGAGACCTCAAGAAGTCCCCCTCCGACTCTGACTTAGAACAAGACAAGCGAGTGAGCGTGAGAGACCTACAAGGAGAGGTGTTGGCTTGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACCAACTCTACTACTACGGTCACCAACGCCACCTCCACCGTCTATAATGTGTCTTCTTAACCATCGTCGTGGTCACCGTTGTCTCGGCCGTGGCCAAAAGATTGTAGAAAACTCTTTTTCTCTATTTCTCGGTGAGTTATGATTTCGTCATGTTTATAGGGAATGAATAAATCCCCATGATTTGAAGAAGCTCTTAATCATGGTTATTACTCTTAGTTAATGCAAACATTAAATATATTTCCTCCGGTAAATGGAACGGGCAAGTATTTTGATTTAGAG

Coding sequence (CDS)

ATGGCTTCGTGGAAGAAAACCATAATTTCTCCTATTAGAAAGGCTTGCACCATCTTCCACCAACACCCGAGAGACCTCAAGAAGTCCCCCTCCGACTCTGACTTAGAACAAGACAAGCGAGTGAGCGTGAGAGACCTACAAGGAGAGGTGTTGGCTTGTGGGTATGAAGACGTGCAAGTTATGTGGTCTATTTTAGACAAGACCAACTCTACTACTACGGTCACCAACGCCACCTCCACCGTCTATAATGTGTCTTCTTAA

Protein sequence

MASWKKTIISPIRKACTIFHQHPRDLKKSPSDSDLEQDKRVSVRDLQGEVLACGYEDVQVMWSILDKTNSTTTVTNATSTVYNVSS

Homology

[Close]

BLAST of CmaCh06G015940 vs. TAIR 10
Match: AT1G48330.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 7.3e-16
Identity = 38/76 (50.00%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 1  MASWKKTIISPIRKACTIFHQHPRDLKKSPSDSDLEQDKRVSVRDLQGEVLACGYEDVQV 60
          MASWKKTI +P +KA T F+Q P+   +  +    E+ ++ +V++LQG+V+ACGYEDV V
Sbjct: 1  MASWKKTIATPFKKAATFFNQ-PQQTNRHANAKAREEHEKRTVQELQGDVMACGYEDVLV 60

Query: 61 MWSILDKTNSTTTVTN 77
          MWSILDK+NS+  +++
Sbjct: 61 MWSILDKSNSSNNLSS 75

[Close]

BLAST of CmaCh06G015940 vs. TAIR 10
Match: AT3G17580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.2 bits (191), Expect = 3.6e-15
Identity = 41/81 (50.62%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 1  MASWKKTIISPIRKACTIFHQHPRDLKKS-----PSDSDLEQDKRVSVRDLQGEVLACGY 60
          MASWKKTI +P +KA T F+Q  +  KK       + +  E +KR+ V++LQGEV+ACGY
Sbjct: 1  MASWKKTIATPFKKAATFFNQPQQSPKKGCRGRMDAQAREEHEKRM-VQELQGEVMACGY 60

Query: 61 EDVQVMWSILDKTNSTTTVTN 77
          +DV VMWSILDK+NS+  +++
Sbjct: 61 DDVLVMWSILDKSNSSNNLSS 80

The following BLAST results are available for this feature:

BLAST of CmaCh06G015940 vs.


Match Name	E-value	Identity	Description

BLAST of CmaCh06G015940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48330.1	7.3e-16	50.00	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G17580.1	3.6e-15	50.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181:SF43	SUBFAMILY NOT NAMED	coord: 1..79
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015940.1	CmaCh06G015940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane