CmaCh06G015900 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G015900
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein CHUP1, chloroplastic
Location	Cma_Chr06: 9921241 .. 9925698 (-)
RNA-Seq Expression	CmaCh06G015900
Synteny	CmaCh06G015900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATGGAAAATCTTCCCACCGAACACAAATGAGAAAAAGGGAAAAGTTGAGATGATGTTGAGCGGCGACCTTCCGTTTTCATCTTTGGAAGTTTGATCCATCCAAGAACTGGAAAGTGGTCCAACAATCCCATGATAAACCATTTGATCTTATGATCAAATCCAGTTTACAGACGAATACTCAATTGGTGGGTTGGTTCAATTTAGATTCTAAGTTAAGTTAATGGCGGACTACTGCTTTTAATCGCCATTGTTAATCAATCCTCTCTTTCTTGCTTGCTTGCTTGCTTGCCATTGGCGTAGAGGTTTGTTTTGTTTGGTGCTTTGTTGTGGTTCTCTTTTCAGGTATGTTGCTATATCTCTCTCCCTCCTGAGGTTTTTTGCCCGGTGCATGGCGGCGGCTGCCAGGTATTTCTTGATCGGTTTACATCTGAGTCAGTACGACGGCGCCTCCGCTTAGCTTTGATGGAACAGAGAGGTAAATCGACTTCTGTGAACTCTACGATGTCATCTCGCGGCGGAAGGGTTTCTTCGAAGGCTATGGAGTCGCCGAAGCGGATGGTTTCTGTATCGGCCGTTCAATCGACGCCGCAGTCTGTTGTGAAGAAGCAAAGTTCGAGAGTTAGCAGATCTCTGACGCCGAATGCTCCAAAGAAGGGTAGAGATGGTGAGAATGTTGGAGTTTCGGCTCGAGTGGTCAACCGTGGTGGTCTCAAGCAAGATTCGCTGCGGCGTTGTTCGAATGCTGAGGATTGTAATGGAGTTAAGAGTGAATTGCAGAAGAAGCTTTGTTTCACAGAGGATTTGATTAAGGATTTGCAGTCTCAGTTAGTGGCGTTGAAGGAGGAGTTGCAGAAGTCTCAGAGCTTGAACCTGGAACTTCAATCGAAGAACGATTTGCTCGTCCGTGACCTAGCCGCCGCTGAAGCGAAGTGCGCTAATGCTAGCAACAACGACCAGGTGAGGAAGGAAGACGCCATAGTCGTTTCCTTGAACATTACTTTTCTATTTCCGGTTGAAAATTTGAAGGAATTTCAGAATCGTTTTCAATTTTCAGTCGGTTGGAGAGTACAATCAGAAACTCGAAAATGGAAAGTTGCAGGCCCAACCATCAAATTCCTGTCGGAATGTTAAGGATTTGGAATCCAAGGCGGCTCCACCACCACCACGACGGGCACCGCCGCCGCCGCCGCCGCCTCTTCCCGTGAAATCCTTGCCCCGACCAGTGGCCTCTCAGAAATCTCCAGACCTCGTACGCCTCTTCCACTCCTTAAAAAAGAAAGAAGGGAAGAGAGGTCCTCCATTGTTGGGAAAACCCGCCGCGATCAATGCCCACAATAGCATTGTTGGGGAAATTCAGAATCGTTCTGCGCATCTTTTAGCGGTAAGGCGGTGATTTTTGTTGCTTTGATTGAAAAATTAAGCCATAGCTAATAGTGTTCATCATCAATTTACAGATAAAAGCTGACATTGAAACCAAAGGAGAGTTCATCAATGGCCTCATTGACAAGATTCTTGGTGCAGCTTATACAGACATAGAAGATGTCCTCAAATTTGTCGATTGGCTTGATTTCCAGCTCTCATCATTGGTAAATCTTTACTTGTCTCTTTTTCCTTTTCTGTGTAAATCCATGGAAAGAGCAAGTTTTAGGACAAAGAATTCTGGGTGTGGTGGGCCATATCATGTCATACAAAGTAGAAGATTTTCTAGTTATTGTTCATGAACATGGTCTGGTTTACTAGGAGAAAAGCAGCAATCCGATCAATAATTGAACATATAATGCTTTGTGCTGGGCTAGTGCCTTCCTATAATGTATGTCTGGCAAATGCTGCGTGCATTGTCTTTCAGGACGAGTTGGAAGAGGAATTCCTAATTCTTACACAGATGAGCCCATAACACTGTCCTAAGCTAAGATGGCCCCTTTCTGACTTCTAAACGTGCCATGGACTGGATCGTCTCTTTAAGTTTTTGTCTACTTTTTCCTTTCCTTTTTTTGACAAAGGGACTTGAGAATGAGGGTTACCCAAATCTTTATAATTGGTTTTGTACATTACCTAGTCTTGACTAGTCGGGTTGTCCCTGGAGGACCTATTTCCAGACTCGCTCTTCGGTTTCGAGGTCACTCAGCTTCTAATCTGAAGGTTCTAACATTGGAAAATGGCAGAATCCGCCCTGCATAAGTACACCCACCACCTTGGAAGCCATACTATTGCTTTATTAACTAAGAAAGCTTAATCTATCCAGAAAGTTAATGGCATTTTCTTGAGTGAACTCTATACTCTTTAGAAAGCGTGGGCATGTGAGGTGGCTTTTATATCTTTTGGACCAAAAAATCTATTCTGCACCTAAATTCTAGAACCTTTTGGATTGAGAATGACGTGGCTTTGGCCTTTTCTTCGTTAATTTTGAGGTGAAGTCCTTGTTGATGTTGACTGGCCAACTGTACAGTTTTGTCTATTTTGCTTGAAACCGGAAGACTCCAGATGATTATCAAAATTTGTCGTTTGTGGAATTTCACTGTGCTCAAATCTATACGTACATTAGTCATATGTTATCTTATCTCCACACTCCTGAACCATGTGTCACTGATAATGCTTTGTTGATCACTTGGAATATGCCGTATATTTCTTCTAGACCTGATTTCTAACAACAGAAGGAAGCATGTTTATGCAGAAACTGAGACTTAATGATAATTCCAGTAGTTTCTTTCTAAATAGTGTCTTTTGAGCTTATAATGAAGAAAAACCCGAAACGAAAATCATTCGGATAAATTAACTATTGAAGCTGCCGCTTTCTAGAGTTGATATATTGTGCTGGTCTATGATAAACGTGATGCTACATTTCAGTTAGTCTGGTAGTCTATTTTCTTGTTGTGTCTATAAATAGCCCTTTGAGAAGGGCGTTCTATCAAGGCTGCACCTGCAACGGCTAACAGGATATACTCATTCATATTAAGTGATTGATAATCCTAGTGGTCAATGAGGGCCGAGTTCAAGTCGGTCACCTGTCTAAGATTTAATATTCTATGAGTTTCCTTGACAACCAAATATAGTATGGTTGGTTGTTTGGTGAAAACAGTTGAGGTGCACACAAGCTATAGCTTACACACTCGTGGATATAAGAAAAAACTATAATAATCATGAACAAGGTACTTCAGAAAAATGTGAAAATAATGGAGTGAAAGAGTTGAAATGGTGTGGCTGATGGATGACCATATGCTTGCTCCTCCTATTGTATTATTGAATGTTAAAATTTCGTCTGCAGGCTGATGAGCGGGCTGTGTTGAAACATTTCAAGTGGCCCGAGAAGAAAGCCGATGCCATGCGAGAAGCAGCCATAGAATACCGGGCACTTAAACTGTTGGAAAATGAGATCTCTTTGTACAAGGATGACACTAATTCTCCATGTGATGCAGCCTTGAAGAAGATGGCGAGCTTGTTAGACAAGTTAGATCTTCTTACTCTTTTTGATACCTTTTCATTATCCAAATCGCATCTGGTCTTGATTTTTACTTCTTTCCTCATATAATGAAAGGTCGGAGCGAGGCATACAACGCTTAATCGGGCTTCGTAATACCGTAATGCATTCTTATCAGGATCTAAAACTCCCAACAAATTGGATGCTAGACTCCGGTATCACGAGTAAGGTATGGTTTCTTTCCAACTTGGCAAACAAACACGAAATTGCTCATCAAATCACATCCCTAAATTCTCTAACCAATCCATTTTCATGCAACATACAATTTCATCAACCATTTCAGATAAAGCAAGCTTCTATGAATCTGGCGAAGATGTACATGAAAAGGGTGAAAACAGAGCTGAATTCGATTCGCAGTTCAGACAAAGAATCCAACCGGGAGTCACTCCTACTCCAGGGAGTTCACTTCGTATACAGAACTCACCAGGTAACAAGCTACTCTCAAACTTTCATAGCATTATAGCATTAGAAGATAAAAGTGGAGGTTGTGATGCAAATAAATGGGTTCTGGTTGGTGGGCAGTTCGCTGGTGGGCTCGATTCAGAAACGCTGTGTGCTTTTGAGGAAATAAAGCAATGGGTCCCAAGACAAGTGGTGGGAGGGTCCCATTCGCAACAAGGATGGATAGTTGGCATACCATCATCATAATCAAGTAACAATAATACTTCTGTGCCTTGTGTAAAATATTTGAATGTATATTTATTATGCAAAATTGAGGTGGGAGTAGCAGAGTAAGTAAGATGGATTATGTTAGTGAAGGAGGTTCTTTTAGAGACATTTGATTGCTTTGCAGTGGCTGCTTAAAGAGATCTTGTTTTCAAATATTAGTTTTTTTTTTTTTAAATTAAAAAATAAAATAGTTTCTTTTACTTCTTAGAAATTTATATTTGTAATTTGAATATTGTTGAATATCCAAACTCTTATTTTAGTATTTGAATTGGTGTGAAAGTTATATATTTTTTTTATCCTTCTTCATTT

mRNA sequence

ATGAAATGGAAAATCTTCCCACCGAACACAAATGAGAAAAAGGGAAAAGTTGAGATGATGTTGAGCGGCGACCTTCCGTTTTCATCTTTGGAAGTATGTTGCTATATCTCTCTCCCTCCTGAGGTTTTTTGCCCGGTGCATGGCGGCGGCTGCCAGGTATTTCTTGATCGGTTTACATCTGAGTCAGTACGACGGCGCCTCCGCTTAGCTTTGATGGAACAGAGAGGTAAATCGACTTCTGTGAACTCTACGATGTCATCTCGCGGCGGAAGGGTTTCTTCGAAGGCTATGGAGTCGCCGAAGCGGATGGTTTCTGTATCGGCCGTTCAATCGACGCCGCAGTCTGTTGTGAAGAAGCAAAGTTCGAGAGTTAGCAGATCTCTGACGCCGAATGCTCCAAAGAAGGGTAGAGATGGTGAGAATGTTGGAGTTTCGGCTCGAGTGGTCAACCGTGGTGGTCTCAAGCAAGATTCGCTGCGGCGTTGTTCGAATGCTGAGGATTGTAATGGAGTTAAGAGTGAATTGCAGAAGAAGCTTTGTTTCACAGAGGATTTGATTAAGGATTTGCAGTCTCAGTTAGTGGCGTTGAAGGAGGAGTTGCAGAAGTCTCAGAGCTTGAACCTGGAACTTCAATCGAAGAACGATTTGCTCGTCCGTGACCTAGCCGCCGCTGAAGCGAAGTGCGCTAATGCTAGCAACAACGACCAGTCGGTTGGAGAGTACAATCAGAAACTCGAAAATGGAAAGTTGCAGGCCCAACCATCAAATTCCTGTCGGAATGTTAAGGATTTGGAATCCAAGGCGGCTCCACCACCACCACGACGGGCACCGCCGCCGCCGCCGCCGCCTCTTCCCGTGAAATCCTTGCCCCGACCAGTGGCCTCTCAGAAATCTCCAGACCTCGTACGCCTCTTCCACTCCTTAAAAAAGAAAGAAGGGAAGAGAGGTCCTCCATTGTTGGGAAAACCCGCCGCGATCAATGCCCACAATAGCATTGTTGGGGAAATTCAGAATCGTTCTGCGCATCTTTTAGCGATAAAAGCTGACATTGAAACCAAAGGAGAGTTCATCAATGGCCTCATTGACAAGATTCTTGGTGCAGCTTATACAGACATAGAAGATGTCCTCAAATTTGTCGATTGGCTTGATTTCCAGCTCTCATCATTGGCTGATGAGCGGGCTGTGTTGAAACATTTCAAGTGGCCCGAGAAGAAAGCCGATGCCATGCGAGAAGCAGCCATAGAATACCGGGCACTTAAACTGTTGGAAAATGAGATCTCTTTGTACAAGGATGACACTAATTCTCCATGTGATGCAGCCTTGAAGAAGATGGCGAGCTTGTTAGACAAGTCGGAGCGAGGCATACAACGCTTAATCGGGCTTCGTAATACCGTAATGCATTCTTATCAGGATCTAAAACTCCCAACAAATTGGATGCTAGACTCCGGTATCACGAGTAAGATAAAGCAAGCTTCTATGAATCTGGCGAAGATGTACATGAAAAGGGTGAAAACAGAGCTGAATTCGATTCGCAGTTCAGACAAAGAATCCAACCGGGAGTCACTCCTACTCCAGGGAGTTCACTTCGTATACAGAACTCACCAGTTCGCTGGTGGGCTCGATTCAGAAACGCTGTGTGCTTTTGAGGAAATAAAGCAATGGGTCCCAAGACAAGTGGTGGGAGGGTCCCATTCGCAACAAGGATGGATAGTTGGCATACCATCATCATAATCAAGTAACAATAATACTTCTGTGCCTTGTGTAAAATATTTGAATGTATATTTATTATGCAAAATTGAGGTGGGAGTAGCAGAGTAAGTAAGATGGATTATGTTAGTGAAGGAGGTTCTTTTAGAGACATTTGATTGCTTTGCAGTGGCTGCTTAAAGAGATCTTGTTTTCAAATATTAGTTTTTTTTTTTTTAAATTAAAAAATAAAATAGTTTCTTTTACTTCTTAGAAATTTATATTTGTAATTTGAATATTGTTGAATATCCAAACTCTTATTTTAGTATTTGAATTGGTGTGAAAGTTATATATTTTTTTTATCCTTCTTCATTT

Coding sequence (CDS)

ATGAAATGGAAAATCTTCCCACCGAACACAAATGAGAAAAAGGGAAAAGTTGAGATGATGTTGAGCGGCGACCTTCCGTTTTCATCTTTGGAAGTATGTTGCTATATCTCTCTCCCTCCTGAGGTTTTTTGCCCGGTGCATGGCGGCGGCTGCCAGGTATTTCTTGATCGGTTTACATCTGAGTCAGTACGACGGCGCCTCCGCTTAGCTTTGATGGAACAGAGAGGTAAATCGACTTCTGTGAACTCTACGATGTCATCTCGCGGCGGAAGGGTTTCTTCGAAGGCTATGGAGTCGCCGAAGCGGATGGTTTCTGTATCGGCCGTTCAATCGACGCCGCAGTCTGTTGTGAAGAAGCAAAGTTCGAGAGTTAGCAGATCTCTGACGCCGAATGCTCCAAAGAAGGGTAGAGATGGTGAGAATGTTGGAGTTTCGGCTCGAGTGGTCAACCGTGGTGGTCTCAAGCAAGATTCGCTGCGGCGTTGTTCGAATGCTGAGGATTGTAATGGAGTTAAGAGTGAATTGCAGAAGAAGCTTTGTTTCACAGAGGATTTGATTAAGGATTTGCAGTCTCAGTTAGTGGCGTTGAAGGAGGAGTTGCAGAAGTCTCAGAGCTTGAACCTGGAACTTCAATCGAAGAACGATTTGCTCGTCCGTGACCTAGCCGCCGCTGAAGCGAAGTGCGCTAATGCTAGCAACAACGACCAGTCGGTTGGAGAGTACAATCAGAAACTCGAAAATGGAAAGTTGCAGGCCCAACCATCAAATTCCTGTCGGAATGTTAAGGATTTGGAATCCAAGGCGGCTCCACCACCACCACGACGGGCACCGCCGCCGCCGCCGCCGCCTCTTCCCGTGAAATCCTTGCCCCGACCAGTGGCCTCTCAGAAATCTCCAGACCTCGTACGCCTCTTCCACTCCTTAAAAAAGAAAGAAGGGAAGAGAGGTCCTCCATTGTTGGGAAAACCCGCCGCGATCAATGCCCACAATAGCATTGTTGGGGAAATTCAGAATCGTTCTGCGCATCTTTTAGCGATAAAAGCTGACATTGAAACCAAAGGAGAGTTCATCAATGGCCTCATTGACAAGATTCTTGGTGCAGCTTATACAGACATAGAAGATGTCCTCAAATTTGTCGATTGGCTTGATTTCCAGCTCTCATCATTGGCTGATGAGCGGGCTGTGTTGAAACATTTCAAGTGGCCCGAGAAGAAAGCCGATGCCATGCGAGAAGCAGCCATAGAATACCGGGCACTTAAACTGTTGGAAAATGAGATCTCTTTGTACAAGGATGACACTAATTCTCCATGTGATGCAGCCTTGAAGAAGATGGCGAGCTTGTTAGACAAGTCGGAGCGAGGCATACAACGCTTAATCGGGCTTCGTAATACCGTAATGCATTCTTATCAGGATCTAAAACTCCCAACAAATTGGATGCTAGACTCCGGTATCACGAGTAAGATAAAGCAAGCTTCTATGAATCTGGCGAAGATGTACATGAAAAGGGTGAAAACAGAGCTGAATTCGATTCGCAGTTCAGACAAAGAATCCAACCGGGAGTCACTCCTACTCCAGGGAGTTCACTTCGTATACAGAACTCACCAGTTCGCTGGTGGGCTCGATTCAGAAACGCTGTGTGCTTTTGAGGAAATAAAGCAATGGGTCCCAAGACAAGTGGTGGGAGGGTCCCATTCGCAACAAGGATGGATAGTTGGCATACCATCATCATAA

Protein sequence

MKWKIFPPNTNEKKGKVEMMLSGDLPFSSLEVCCYISLPPEVFCPVHGGGCQVFLDRFTSESVRRRLRLALMEQRGKSTSVNSTMSSRGGRVSSKAMESPKRMVSVSAVQSTPQSVVKKQSSRVSRSLTPNAPKKGRDGENVGVSARVVNRGGLKQDSLRRCSNAEDCNGVKSELQKKLCFTEDLIKDLQSQLVALKEELQKSQSLNLELQSKNDLLVRDLAAAEAKCANASNNDQSVGEYNQKLENGKLQAQPSNSCRNVKDLESKAAPPPPRRAPPPPPPPLPVKSLPRPVASQKSPDLVRLFHSLKKKEGKRGPPLLGKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKILGAAYTDIEDVLKFVDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNSPCDAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGITSKIKQASMNLAKMYMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLDSETLCAFEEIKQWVPRQVVGGSHSQQGWIVGIPSS

Homology

[Close]

BLAST of CmaCh06G015900 vs. ExPASy Swiss-Prot
Match: Q9LI74 (Protein CHUP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHUP1 PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 6.1e-71
Identity = 145/297 (48.82%), Postives = 200/297 (67.34%), Query Frame = 0


Query: 270 PPPPRRAPP------PPPPPLPVKSLPRPVAS----QKSPDLVRLFHSLKKKEGKR-GPP 329
           PPPP   PP      PPPPP P  +L R         ++P+LV  + SL K+E K+ G P
Sbjct: 683 PPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAP 742

Query: 330 LL---GKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKILGAAYTDIEDV 389
            L   G   +  A N+++GEI+NRS  LLA+KAD+ET+G+F+  L  ++  +++TDIED+
Sbjct: 743 SLISSGTGNSSAARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDL 802

Query: 390 LKFVDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNS 449
           L FV WLD +LS L DERAVLKHF WPE KADA+REAA EY+ L  LE +++ + DD N 
Sbjct: 803 LAFVSWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNL 862

Query: 450 PCDAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGITSKIKQASMNL 509
            C+ ALKKM  LL+K E+ +  L+  R+  +  Y++  +P +W+ D+G+  KIK +S+ L
Sbjct: 863 SCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQL 922

Query: 510 AKMYMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLDSETLCAFEEIK 553
           AK YMKRV  EL+S+  SDK+ NRE LLLQGV F +R HQFAGG D+E++ AFEE++
Sbjct: 923 AKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 979

[Close]

BLAST of CmaCh06G015900 vs. TAIR 10
Match: AT1G48280.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 379.8 bits (974), Expect = 3.9e-105
Identity = 234/495 (47.27%), Postives = 310/495 (62.63%), Query Frame = 0


Query: 114 QSVVKKQSSRVSRSLTPNAPKKGRD------GENVGVSARVVNRGGLKQDSLRRCSNAED 173
           +S++ K++      +   AP++ R        E  G   R ++R    ++++   + AED
Sbjct: 55  RSILLKRAKSAEEEMAVLAPQRARSVNRPAVVEQFGCPRRPISR--KSEETVMATAAAED 114

Query: 174 CNGVK-SELQKKLCFTEDLIKDLQSQLVALKEELQKSQSLNLELQSKNDLLVRDLAAAEA 233
               +  EL++KL   E LIKDLQ Q++ LK EL+++++ N+EL+  N  L +DL +AEA
Sbjct: 115 EKRKRMEELEEKLVVNESLIKDLQLQVLNLKTELEEARNSNVELELNNRKLSQDLVSAEA 174

Query: 234 KCANASNNDQSVGEYN------------QKLENGKLQAQ--------------------- 293
           K ++ S+ND+   E+              KLE  K++ +                     
Sbjct: 175 KISSLSSNDKPAKEHQNSRFKDIQRLIASKLEQPKVKKEVAVESSRLSPPSPSPSRLPPT 234

Query: 294 ---------PSNSCRNVKDLESKAAPPPPRRAPPPPPPPLPVKSLPRPVASQKSPDLVRL 353
                    P++S     +  S  APP     PPPPPPP P + L +   +QKSP + +L
Sbjct: 235 PPLPKFLVSPASSLGKRDENSSPFAPP----TPPPPPPPPPPRPLAKAARAQKSPPVSQL 294

Query: 354 FHSLKKKEGKR--GPPLLGKPAAIN-AHNSIVGEIQNRSAHLLAIKADIETKGEFINGLI 413
           F  L K++  R     + G  + +N AHNSIVGEIQNRSAHL+AIKADIETKGEFIN LI
Sbjct: 295 FQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAHLIAIKADIETKGEFINDLI 354

Query: 414 DKILGAAYTDIEDVLKFVDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKL 473
            K+L   ++D+EDV+KFVDWLD +L++LADERAVLKHFKWPEKKAD ++EAA+EYR LK 
Sbjct: 355 QKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWPEKKADTLQEAAVEYRELKK 414

Query: 474 LENEISLYKDDTNSPCDAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLD 533
           LE E+S Y DD N     ALKKMA+LLDKSE+ I+RL+ LR + M SYQD K+P  WMLD
Sbjct: 415 LEKELSSYSDDPNIHYGVALKKMANLLDKSEQRIRRLVRLRGSSMRSYQDFKIPVEWMLD 474

Query: 534 SGITSKIKQASMNLAKMYMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLD 557
           SG+  KIK+AS+ LAK YM RV  EL S R+ D+ES +E+LLLQGV F YRTHQFAGGLD
Sbjct: 475 SGMICKIKRASIKLAKTYMNRVANELQSARNLDRESTKEALLLQGVRFAYRTHQFAGGLD 534

[Close]

BLAST of CmaCh06G015900 vs. TAIR 10
Match: AT3G25690.1 (Hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 270.0 bits (689), Expect = 4.4e-72
Identity = 145/297 (48.82%), Postives = 200/297 (67.34%), Query Frame = 0


Query: 270 PPPPRRAPP------PPPPPLPVKSLPRPVAS----QKSPDLVRLFHSLKKKEGKR-GPP 329
           PPPP   PP      PPPPP P  +L R         ++P+LV  + SL K+E K+ G P
Sbjct: 683 PPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAP 742

Query: 330 LL---GKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKILGAAYTDIEDV 389
            L   G   +  A N+++GEI+NRS  LLA+KAD+ET+G+F+  L  ++  +++TDIED+
Sbjct: 743 SLISSGTGNSSAARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDL 802

Query: 390 LKFVDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNS 449
           L FV WLD +LS L DERAVLKHF WPE KADA+REAA EY+ L  LE +++ + DD N 
Sbjct: 803 LAFVSWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNL 862

Query: 450 PCDAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGITSKIKQASMNL 509
            C+ ALKKM  LL+K E+ +  L+  R+  +  Y++  +P +W+ D+G+  KIK +S+ L
Sbjct: 863 SCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQL 922

Query: 510 AKMYMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLDSETLCAFEEIK 553
           AK YMKRV  EL+S+  SDK+ NRE LLLQGV F +R HQFAGG D+E++ AFEE++
Sbjct: 923 AKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 979

[Close]

BLAST of CmaCh06G015900 vs. TAIR 10
Match: AT3G25690.2 (Hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 270.0 bits (689), Expect = 4.4e-72
Identity = 145/297 (48.82%), Postives = 200/297 (67.34%), Query Frame = 0


Query: 270 PPPPRRAPP------PPPPPLPVKSLPRPVAS----QKSPDLVRLFHSLKKKEGKR-GPP 329
           PPPP   PP      PPPPP P  +L R         ++P+LV  + SL K+E K+ G P
Sbjct: 683 PPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAP 742

Query: 330 LL---GKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKILGAAYTDIEDV 389
            L   G   +  A N+++GEI+NRS  LLA+KAD+ET+G+F+  L  ++  +++TDIED+
Sbjct: 743 SLISSGTGNSSAARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDL 802

Query: 390 LKFVDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNS 449
           L FV WLD +LS L DERAVLKHF WPE KADA+REAA EY+ L  LE +++ + DD N 
Sbjct: 803 LAFVSWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNL 862

Query: 450 PCDAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGITSKIKQASMNL 509
            C+ ALKKM  LL+K E+ +  L+  R+  +  Y++  +P +W+ D+G+  KIK +S+ L
Sbjct: 863 SCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQL 922

Query: 510 AKMYMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLDSETLCAFEEIK 553
           AK YMKRV  EL+S+  SDK+ NRE LLLQGV F +R HQFAGG D+E++ AFEE++
Sbjct: 923 AKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 979

[Close]

BLAST of CmaCh06G015900 vs. TAIR 10
Match: AT3G25690.3 (Hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 270.0 bits (689), Expect = 4.4e-72
Identity = 145/297 (48.82%), Postives = 200/297 (67.34%), Query Frame = 0


Query: 270 PPPPRRAPP------PPPPPLPVKSLPRPVAS----QKSPDLVRLFHSLKKKEGKR-GPP 329
           PPPP   PP      PPPPP P  +L R         ++P+LV  + SL K+E K+ G P
Sbjct: 542 PPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAP 601

Query: 330 LL---GKPAAINAHNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKILGAAYTDIEDV 389
            L   G   +  A N+++GEI+NRS  LLA+KAD+ET+G+F+  L  ++  +++TDIED+
Sbjct: 602 SLISSGTGNSSAARNNMIGEIENRSTFLLAVKADVETQGDFVQSLATEVRASSFTDIEDL 661

Query: 390 LKFVDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNS 449
           L FV WLD +LS L DERAVLKHF WPE KADA+REAA EY+ L  LE +++ + DD N 
Sbjct: 662 LAFVSWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNL 721

Query: 450 PCDAALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGITSKIKQASMNL 509
            C+ ALKKM  LL+K E+ +  L+  R+  +  Y++  +P +W+ D+G+  KIK +S+ L
Sbjct: 722 SCEPALKKMYKLLEKVEQSVYALLRTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQL 781

Query: 510 AKMYMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLDSETLCAFEEIK 553
           AK YMKRV  EL+S+  SDK+ NRE LLLQGV F +R HQFAGG D+E++ AFEE++
Sbjct: 782 AKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEELR 838

[Close]

BLAST of CmaCh06G015900 vs. TAIR 10
Match: AT4G18570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 248.4 bits (633), Expect = 1.4e-65
Identity = 142/294 (48.30%), Postives = 194/294 (65.99%), Query Frame = 0


Query: 270 PPPP--RRAPPPPPPPLPVKSLPRPVAS-QKSPDLVRLFHSLKKKE--GKRGPPLLGKPA 329
           PPPP   +APPPPPPP P KSL    A  ++ P++V  +HSL +++    R     G  A
Sbjct: 325 PPPPSVSKAPPPPPPPPPPKSLSIASAKVRRVPEVVEFYHSLMRRDSTNSRRDSTGGGNA 384

Query: 330 AINA------HNSIVGEIQNRSAHLLAIKADIETKGEFINGLIDKILGAAYTDIEDVLKF 389
           A  A         ++GEI+NRS +LLAIK D+ET+G+FI  LI ++  AA++DIEDV+ F
Sbjct: 385 AAEAILANSNARDMIGEIENRSVYLLAIKTDVETQGDFIRFLIKEVGNAAFSDIEDVVPF 444

Query: 390 VDWLDFQLSSLADERAVLKHFKWPEKKADAMREAAIEYRALKLLENEISLYKDDTNSPCD 449
           V WLD +LS L DERAVLKHF+WPE+KADA+REAA  Y  LK L +E S +++D      
Sbjct: 445 VKWLDDELSYLVDERAVLKHFEWPEQKADALREAAFCYFDLKKLISEASRFREDPRQSSS 504

Query: 450 AALKKMASLLDKSERGIQRLIGLRNTVMHSYQDLKLPTNWMLDSGITSKIKQASMNLAKM 509
           +ALKKM +L +K E G+  L  +R +    ++  ++P +WML++GITS+IK AS+ LA  
Sbjct: 505 SALKKMQALFEKLEHGVYSLSRMRESAATKFKSFQIPVDWMLETGITSQIKLASVKLAMK 564

Query: 510 YMKRVKTELNSIRSSDKESNRESLLLQGVHFVYRTHQFAGGLDSETLCAFEEIK 553
           YMKRV  EL +I     E   E L++QGV F +R HQFAGG D+ET+ AFEE++
Sbjct: 565 YMKRVSAELEAIEGGGPE--EEELIVQGVRFAFRVHQFAGGFDAETMKAFEELR 616

The following BLAST results are available for this feature:

BLAST of CmaCh06G015900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LI74	6.1e-71	48.82	Protein CHUP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CHUP1 PE=1 SV=1	[more]

BLAST of CmaCh06G015900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48280.1	3.9e-105	47.27	hydroxyproline-rich glycoprotein family protein	[more]
AT3G25690.1	4.4e-72	48.82	Hydroxyproline-rich glycoprotein family protein	[more]
AT3G25690.2	4.4e-72	48.82	Hydroxyproline-rich glycoprotein family protein	[more]
AT3G25690.3	4.4e-72	48.82	Hydroxyproline-rich glycoprotein family protein	[more]
AT4G18570.1	1.4e-65	48.30	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 186..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..289
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..296
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 246..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..129
None	No IPR available	PANTHER	PTHR31342:SF43	F11A17.16	coord: 78..561
IPR040265	Protein CHUP1-like	PANTHER	PTHR31342	PROTEIN CHUP1, CHLOROPLASTIC	coord: 78..561

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015900.1	CmaCh06G015900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
cellular_component	GO:0009707	chloroplast outer membrane