CmaCh06G015760 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G015760
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description30S ribosomal protein S1
LocationCma_Chr06: 9865219 .. 9869713 (+)
RNA-Seq ExpressionCmaCh06G015760
SyntenyCmaCh06G015760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCCAACCCAAAACCTTATCAGTTCTGTTTACTTAGTCGGGGCCTCAGGGGGAAGAAGGAGAATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCGTTTTCATCGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCTGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACTGGTGAAGGAACGTTTCAAGCTGAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGACTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGTTATTTGCGTGTTCTTTTTGTTTTCTCTCTTGTAATTTTGTGTGGAAGGGATGTTCTGGAGTTGATTATTTTTTTCTTTAATTTGATATTGTGCGAGTTTTTGTAAGAATTGGGAACTGTTTTGATAGTGTTGGATTATAGTTCGTTATGTGATTCTGTGAAATTTCTTGTTAATTACACTGGAATTTGGATATTGTGAACTTGAATGGTTTGTTAATTCGATTTTGTTCTGGGAAATGGAAGTGAAAATGCTTATGCGAATTGGAAAGTATACTGATAGTGTCATCTTCGGGCATTTGAAGGAGATTGGGTCGTAATTTATGTAGTTTACCTCTTCAGGTGAAAGGTACTGTGTTCTGTACGGATTCCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAATATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAATGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGGTATTTCCATCCAATTTGTGGTTCTTTTGTTCATCTTTTTGTTTGAAGTATTGGTGTAGGATCGAGGTCTAGTCGTGTAATAAGAAACTATAAAGTACTATAACATTCCTGGTATGATTAATTTAAAATCACCACTAAACTCAAGTTTGAATTGATAGGCTTACTATGAACATAGGACTTCAACTTAGTTTTGATACTATGTTAAATTTCCACTAAACCCAAAATTTTAGGCCGATAGATTGCAATAAATTTGATTTTTGTTTGATACTTAAAAATTCATATGTAGCCATTCTTTTGTGTTCAATATTCAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCGACGGTATTTTCTATTAGCTATTAATGACTTTCACATTTTGAAAGATTTCCTCGCTTTATGTATATGTAATAGATTATAGTTTCTGTTGGAGTAAAGCATTTTAGTTTCTCACAGTTGTTAATTGATGAATGGTTTTATTATTTACAAAGGTCATGCTGATTTTCACTCCCTTCCCTTAACAAAGTATTGGATACCTACGATATACTCTTCTCTTTTCTATATGTGAATTACTTTCCCTTTTGGTGTCAAGGACTATAGTAGTTTCCTTGATTTTAGTTATATACTGGCAATTAACATCATACCTCTTTTTTTCATTATGTTCATGCAATTAATCAGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTTTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACAGTTCAAAGCCTTAAACCTTATGGTGCATTCATTGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTAGTTTAATGGCCTTCAAGTGATTTATAAGGCTTCTCACACTCATGTTCCCAAGTCTTACAATGAGTTATTCTGGCATAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGTATTCTCTTTGCTAGTTAGAGTTATCTTTTCTGTCACTTTGTACCAGTGCTGATTCTTTTTTTCGTAAGACGTGCACAAGAACGTGGTTATGGTCTTTCTGCTACAGTGTTACCATAATGATAAATTTTTACTAGTTAAATTGCAAATTTTCATATGCCCAAGTTCTTGTGCTATGGTAGGGTAGAGGAAACTACTAACTAATGCTAATTTGCCTTCATCCCTGGTAGCATGTGCTTCCGTCTTGTTTTCAGCATTTTAAAACTATGATTATATCAGACTTCTCTTATAGATTTTTAGTGGTTATCCCTTGAAATGTTGAAAACAAAACCTAGCGTCATATGGAGGAATGCTTGTAAAGCTCTATTTTTGTATGTTTGGATATAAAAGGTAGTAACTATTTTGAAAATAGAGAGATATTAGAGTTCCTGGATCCTTGTGTTTTGTATAGCCTTTTGTAAGAGCGCACTTGATAGGAGTATTTGTAATAGTTTTTGGAGGGGGGCTGTATGAAACCTCCTGTGGCCTCAGTTGGGGTAAAACCTTATCTTCATTTTTTTTTCCAATTCCGAGTTCATTTCCTATCAAATAGTAGACTAAAAAAGAAGGTAAAAAGATGAAAAATTGCTAGAGGTATATTGTAACTATAATTTTGTTTCTATTTACAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCCGACATGCTTAAGTTTCAGCCTGAGGTACTTCACAGCGATCTATCCTTGAGATTTCTAAACCGTACCAAGTTAATGATAAATGCAACTAAATTTTACATGCTGTAGTTCTAAACCAAAATGTGGAAAGTTCATCAGTTCCTTTGCCAAAAAAAGGAAAAAAAAAAAAAAAGAAAAAAGAAAAGAAACGTACATCCTTTCTACTTCATTGGGTACTTGCAATGTGGGATGAAAGTCCAATTTTGCAGTTGTGGACCGCTAGCAGATATTGTCCTCTTTAGACTTTTCCTTTCGGGTTTTAAAACGCGTTTACTTGGGAGAGATTTCCACACCTTTATAAAGAATGTTTTGTTCTTCTCCTCAATCGATGGGGGATCTCACAACAACTTGATAACAATCTGCATCAATACTCATTCTTTTTATGTGTCAAATAGAAAGACAATGATGTAGAACTATAGAATAGAAAGGACTGTCATCATTGATTAGGAAATGACAATGGGCTGTACTCTTTTGGATATTCTTATATTTTTTGGTTGATATTCTATGATTTAGGAGGATTTCTATAAGATATTGTTGGATACTCCTATAATTCAAAAGTGTATTAAGCTTAACTGTTGGACTAGTTAAAAGTATCCTTTATAAGATATTAGAAGCGTTCATAACTATACTTTTTCATTTCCAATGAAGTGCTATTAAGTTCTTTTTCGAAGGTTGTTATGGAAATAGTTTCATGTTGAGGATTGTTGGGAGAGGAGTTCCACGTTGGCTAATTAAGAAGTTGATCATGGATTTATAAGTAAGAAATATATCTCCATTGGTATGAGGCCTCTTGAGAAAACCAAAAGGAAAGCCATGAGAGCTTATATTCAAAGTGGACAATATCATATCATTGTAGAGGTCCGTGATTCGTAACACTTCACAAGAAATTAGTGCTCTCTGATGTCATTCAAAATTAAGTACTCACTCATGCTATCAGAAGTCAGCATTGAATTGGTTATTCGTATATTGAATCTTGTTCTCAATCTTCTGTTGTCCTTCATTTCTCTTTGCAGCGGACTTTATATCGTTGAATTTGAACCTAAATGGTGACTTGTTTTCTTAACCATACAGAGTGGATTGACCTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTTCCTCCAGCTGAAGAGTGAAGATTCAAAGCTTTCCCACTGCTGTGTTCTGTACACTGTTTCAAATTGTACACAGAGGTCAGCCCTTGTAATTTGGTACGCAACTTAGCTCTTCATGTCGTAGCTTACTGTTGAATGCTTAATGAAAGCCTTGCCTCTTCATTTTCATTCTCTACCTTTTTGTTTCATTGGTTTCGGCATGGAAAATGAAAATTTGTTTGATCAACACTGTTAGATTTCATTATAGTTGATGTTGGACAGAATTCCTCTAAGCTTTATGTATTAATGAATGTATTTTTACTCAACTCGAACACACTTTTTCGACTTTTGTTATTGGCTAGCCATGAGAGTTAACTAAAAAAGCTTCGAGAGATCTTCGGTAGTATCTTTTTT

mRNA sequence

ATCCAACCCAAAACCTTATCAGTTCTGTTTACTTAGTCGGGGCCTCAGGGGGAAGAAGGAGAATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCGTTTTCATCGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCTGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACTGGTGAAGGAACGTTTCAAGCTGAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGACTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGTGAAAGGTACTGTGTTCTGTACGGATTCCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAATATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAATGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCGACGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTTTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACAGTTCAAAGCCTTAAACCTTATGGTGCATTCATTGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCCGACATGCTTAAGTTTCAGCCTGAGAGTGGATTGACCTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTTCCTCCAGCTGAAGAGTGAAGATTCAAAGCTTTCCCACTGCTGTGTTCTGTACACTGTTTCAAATTGTACACAGAGGTCAGCCCTTGTAATTTGGTACGCAACTTAGCTCTTCATGTCGTAGCTTACTGTTGAATGCTTAATGAAAGCCTTGCCTCTTCATTTTCATTCTCTACCTTTTTGTTTCATTGGTTTCGGCATGGAAAATGAAAATTTGTTTGATCAACACTGTTAGATTTCATTATAGTTGATGTTGGACAGAATTCCTCTAAGCTTTATGTATTAATGAATGTATTTTTACTCAACTCGAACACACTTTTTCGACTTTTGTTATTGGCTAGCCATGAGAGTTAACTAAAAAAGCTTCGAGAGATCTTCGGTAGTATCTTTTTT

Coding sequence (CDS)

ATGGCTTCCATGGCTCAGCAATTCAATGGGCTGCGATGCGCGCCTCTATCTTCATCGCGTCTCTCGAAGCCGTTTTCATCGAGGCATCTGCAGAACAGGGCCCGTTCACTTCCTGTTCAAGCTGCTGTCATTACGAGCCCCATTCCCAGTCCACTGGTGAAGGAACGTTTCAAGCTGAAGGAGATCTTTGAGGAGGCATATGAACGCTGCCGTAATGCCCCTGTAGAAGGCATCTCCTTCACTGTCGAGGACTTCCATTCCGCTATTGAGAAATACGACTTCAATTCTGAAGTCGGAACTAAGGTGAAAGGTACTGTGTTCTGTACGGATTCCAATGGAGCACTCGTTGACATTACTGCCAAGTCTTCTGCATACTTGCCATTGCAGGAGGCTTGCATTCACAGAATAAAACATGTTGAAGAAGCAGGAATATATCCTGGTTTGAGACAGGAGTTTGTCATTATTGGTGAGAATGAAGCTGATGATAGCTTGGTTTTGAGCTTAAGATCCATCCAATATGACCTGGCTTGGGAGAGGTGCAGACAGCTTCAAGCAGAGGATGTTGTTGTCAAGGGTAAGGTGGTTGATGCAAACAAAGGTGGAGTTGTGGCAGTTGTGGAAGGCCTAAGAGGGTTCGTCCCTTTCTCACAAATATCGACGAAATCAACTGCTGAAGAGCTTCTCATGAAAGAGATTCCTTTGAAATTTGTGGAGGTTGATGAAGAACAATCAAGGCTTGTCCTTAGTAACCGTAAGGCCGTGGCTGACAGCCAGGCACAGCTTGGAATTGGATCAGTGGTCATTGGGACAGTTCAAAGCCTTAAACCTTATGGTGCATTCATTGACATTGGTGGAGTCAATGGTCTTCTTCATGTCAGTCAAATCAGTCATGACCGGATATCAGATATTGCAACAGTTCTTCAGCCTGGAGACACTCTCAAGGTCATGATATTGAGCCATGATCGTGAGAGAGGCCGAGTTAGTCTTTCTACCAAGAAATTAGAGCCCACTCCAGGGGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCACAAACTTTCAGGCAAAGAATAGCCTATGCAGAGGCAATGGCACGTGCCGACATGCTTAAGTTTCAGCCTGAGAGTGGATTGACCTTGACTACTGATGGAATATTGGGACCAATGACCCCAGAGTTGCCCGTAGAGGGTTTAGATTTGAACGATGTTCCTCCAGCTGAAGAGTGA

Protein sequence

MASMAQQFNGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPLVKERFKLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVDITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE
Homology
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BLAST of CmaCh06G015760 vs. ExPASy Swiss-Prot
Match: P29344 (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 1.5e-188
Identity = 339/414 (81.88%), Postives = 381/414 (92.03%), Query Frame = 0 

Query: 1   MASMAQQF-NGLRCAPLSSSRLSKPFSSRHLQNRARSLPVQAAVITSPIPSPLVKERFKL 60
           MAS+AQQ   GLRC PLS+S LSKPFS +H   + R  P+ +AV  S   +   +ER KL
Sbjct: 1   MASLAQQLAGGLRCPPLSNSNLSKPFSPKHTL-KPRFSPIVSAVAVS---NAQTRERQKL 60

Query: 61  KEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVDIT 120
           K++FE+AYERCRNAP+EG+SFT++DFH+A++KYDFNSE+G++VKGTVFCTD+NGALVDIT
Sbjct: 61  KQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDIT 120

Query: 121 AKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWER 180
           AKSSAYLPL EACI+RIK+VEEAGI PG+R+EFVIIGENEADDSL+LSLR IQY+LAWER
Sbjct: 121 AKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWER 180

Query: 181 CRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEV 240
           CRQLQAEDVVVKGK+V ANKGGVVA+VEGLRGFVPFSQIS+KS+AEELL KEIPLKFVEV
Sbjct: 181 CRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEV 240

Query: 241 DEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDR 300
           DEEQSRLV+SNRKA+ADSQAQLGIGSVV GTVQSLKPYGAFIDIGG+NGLLHVSQISHDR
Sbjct: 241 DEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300

Query: 301 ISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360
           +SDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF
Sbjct: 301 VSDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTF 360

Query: 361 RQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDLNDVPPAEE 414
           RQRIA AEAMARADML+FQPESGLTL++DGILGP+T +LP EGLDL+ VPPA E
Sbjct: 361 RQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSVVPPAVE 410

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BLAST of CmaCh06G015760 vs. ExPASy Swiss-Prot
Match: Q93VC7 (30S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 PE=1 SV=1)

HSP 1 Score: 625.9 bits (1613), Expect = 3.2e-178
Identity = 325/416 (78.12%), Postives = 377/416 (90.62%), Query Frame = 0 

Query: 1   MASMAQQFNGLRCAPL-SSSRLSKPFSSRHLQNRARSL--PVQAAVITSPIPSPLVKERF 60
           MAS+AQQF+GLRC+PL SSSRLS+  S    QN++ S+   + AAV  S   S   KER 
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMS---SGQTKERL 60

Query: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVD 120
           +LK++FE+AYERCR +P+EG++FTV+DF +AIE+YDFNSE+GT+VKGTVF TD+NGALVD
Sbjct: 61  ELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVD 120

Query: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAW 180
           I+AKSSAYL +++ACIHRIKHVEEAGI PG+ +EFVIIGENE+DDSL+LSLR+IQY+LAW
Sbjct: 121 ISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAW 180

Query: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFV 240
           ERCRQLQAEDV+VK KV+ ANKGG+VA+VEGLRGFVPFSQIS+K+ AEELL KEIPLKFV
Sbjct: 181 ERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFV 240

Query: 241 EVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISH 300
           EVDEEQ++LVLSNRKAVADSQAQLGIGSVV+G VQSLKPYGAFIDIGG+NGLLHVSQISH
Sbjct: 241 EVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360
           DR+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ
Sbjct: 301 DRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 TFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDL--NDVPPA 412
           TFRQRIA AEAMARADML+FQPESGLTL++DGILGP+  ELP +G+DL  +D+P A
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPDDGVDLTVDDIPSA 413

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BLAST of CmaCh06G015760 vs. ExPASy Swiss-Prot
Match: P46228 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpsA PE=1 SV=4)

HSP 1 Score: 299.7 bits (766), Expect = 5.2e-80
Identity = 149/294 (50.68%), Postives = 213/294 (72.45%), Query Frame = 0 

Query: 71  RNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVDITAKSSAYLPLQE 130
           ++ P   I FT EDF + +++YD++   G  V GTVF  +  GAL+DI AK++A+LP+QE
Sbjct: 4   QDIPAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQE 63

Query: 131 ACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVV 190
             I+R++  EE  + P   +EF I+ +   D  L LS+R I+Y  AWER RQLQ ED  V
Sbjct: 64  MSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATV 123

Query: 191 KGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSN 250
           + +V   N+GG +  +EGLRGF+P S IST+   E+L+ +E+PLKF+EVDE+++RLVLS+
Sbjct: 124 RSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSH 183

Query: 251 RKAVADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQP 310
           R+A+ + +  +L +G VV+G V+ +KPYGAFIDIGGV+GLLH+S+ISHD I    +V   
Sbjct: 184 RRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNV 243

Query: 311 GDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 364
            D +KVMI+  D ERGR+SLSTK+LEP PGDM+RNP++V+EKAEEMA  +R+++
Sbjct: 244 NDEVKVMIIDLDAERGRISLSTKQLEPEPGDMVRNPEVVYEKAEEMAAQYREKL 296

[Close]
BLAST of CmaCh06G015760 vs. ExPASy Swiss-Prot
Match: P73530 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rps1A PE=3 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 5.4e-77
Identity = 151/312 (48.40%), Postives = 215/312 (68.91%), Query Frame = 0 

Query: 78  ISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVDITAKSSAYLPLQEACIHRIK 137
           I FT+EDF + ++KYD++   G  V GTVF  +S GAL+DI AK++AY+P+QE  I+R+ 
Sbjct: 10  IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69

Query: 138 HVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDA 197
             EE  + P   +EF I+ +   D  L LS+R I+Y  AWER RQLQAED  V+  V   
Sbjct: 70  DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 129

Query: 198 NKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADS 257
           N+GG +  +EGLRGF+P S IS +   E+L+ +++PLKF+EVDEE++RLVLS+R+A+ + 
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 189

Query: 258 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVM 317
           +   L +  VV+G+V+ +KPYGAFIDIGGV+GLLH+S+ISHD I    +V    D +KVM
Sbjct: 190 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 249

Query: 318 ILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLK 377
           I+  D ERGR+SLSTK+LEP PG M+++  LV E A+EMA+ FRQ+      +A A  + 
Sbjct: 250 IIDLDAERGRISLSTKQLEPEPGAMLKDRDLVNEMADEMAEIFRQK-----RLAEAQGIP 309

Query: 378 FQPESGLTLTTD 389
           ++P + +  T D
Sbjct: 310 YEPPTSVDDTDD 315

[Close]
BLAST of CmaCh06G015760 vs. ExPASy Swiss-Prot
Match: O33698 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpsA PE=3 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-44
Identity = 97/282 (34.40%), Postives = 167/282 (59.22%), Query Frame = 0 

Query: 83  EDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVDITAKSSAYLPLQEACIHRIKHVEEA 142
           +DF  A+E    +S+ G  V+G V    ++GA +DI  K+ A+LP +EA +H +  + EA
Sbjct: 12  DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EA 71

Query: 143 GIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGV 202
            +      EF++I +   D  + +SLR++  + AW R  +LQ     V+ KV  +NKGGV
Sbjct: 72  HLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGV 131

Query: 203 VAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQA-QL 262
            A +EGLR F+P S ++ K   + L  K + + F+EV+    +LVLS R+A   +   ++
Sbjct: 132 TADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQAARTALVREI 191

Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHD 322
            +G ++ G V  LKP+G F+D+GG   LL ++QIS   ++D+  + + GD ++ ++++ D
Sbjct: 192 EVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIGDPIQALVVAID 251

Query: 323 RERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRI 364
             +GR+SLSTK LE  PG+++ N   +   A + A+  R+++
Sbjct: 252 NTKGRISLSTKVLENHPGEILENVAELQASAADRAERARKQL 292

[Close]
BLAST of CmaCh06G015760 vs. TAIR 10
Match: AT5G30510.1 (ribosomal protein S1 )

HSP 1 Score: 625.9 bits (1613), Expect = 2.2e-179
Identity = 325/416 (78.12%), Postives = 377/416 (90.62%), Query Frame = 0 

Query: 1   MASMAQQFNGLRCAPL-SSSRLSKPFSSRHLQNRARSL--PVQAAVITSPIPSPLVKERF 60
           MAS+AQQF+GLRC+PL SSSRLS+  S    QN++ S+   + AAV  S   S   KER 
Sbjct: 1   MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNKSASVSPTIVAAVAMS---SGQTKERL 60

Query: 61  KLKEIFEEAYERCRNAPVEGISFTVEDFHSAIEKYDFNSEVGTKVKGTVFCTDSNGALVD 120
           +LK++FE+AYERCR +P+EG++FTV+DF +AIE+YDFNSE+GT+VKGTVF TD+NGALVD
Sbjct: 61  ELKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVD 120

Query: 121 ITAKSSAYLPLQEACIHRIKHVEEAGIYPGLRQEFVIIGENEADDSLVLSLRSIQYDLAW 180
           I+AKSSAYL +++ACIHRIKHVEEAGI PG+ +EFVIIGENE+DDSL+LSLR+IQY+LAW
Sbjct: 121 ISAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAW 180

Query: 181 ERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEELLMKEIPLKFV 240
           ERCRQLQAEDV+VK KV+ ANKGG+VA+VEGLRGFVPFSQIS+K+ AEELL KEIPLKFV
Sbjct: 181 ERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFV 240

Query: 241 EVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGVNGLLHVSQISH 300
           EVDEEQ++LVLSNRKAVADSQAQLGIGSVV+G VQSLKPYGAFIDIGG+NGLLHVSQISH
Sbjct: 241 EVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISH 300

Query: 301 DRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360
           DR+SDIATVLQPGDTLKVMILSHDR+RGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ
Sbjct: 301 DRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQ 360

Query: 361 TFRQRIAYAEAMARADMLKFQPESGLTLTTDGILGPMTPELPVEGLDL--NDVPPA 412
           TFRQRIA AEAMARADML+FQPESGLTL++DGILGP+  ELP +G+DL  +D+P A
Sbjct: 361 TFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLGSELPDDGVDLTVDDIPSA 413

[Close]
BLAST of CmaCh06G015760 vs. TAIR 10
Match: AT1G71720.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 103.6 bits (257), Expect = 3.9e-22
Identity = 65/205 (31.71%), Postives = 122/205 (59.51%), Query Frame = 0 

Query: 165 VLSLRSIQYDLAWERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVP----FSQIST 224
           +LS R     +AW R RQ++  +  ++ K+ + N GG++  +EGLR F+P      +++T
Sbjct: 261 LLSSRRYFRRIAWHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFIPKQELVKKVNT 320

Query: 225 KSTAEELLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQLGIGSVVIGTVQSLKPYGAF 284
            +  +E + +   ++   ++E+++ L+LS +  VA  +  L  G+++ GTV  + PYGA 
Sbjct: 321 FTELKENVGRRFLVQITRLNEDKNDLILSEK--VAWEKLYLREGTLLEGTVVKILPYGAQ 380

Query: 285 IDIG--GVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 344
           + +G    +GLLH+S I+  RI  ++ VLQ  +++KV+++       ++SLS   LE  P
Sbjct: 381 VKLGDSSRSGLLHISNITRRRIGSVSDVLQVDESVKVLVVK-SLFPDKISLSIADLESEP 440

Query: 345 GDMIRNPKLVFEKAEEMAQTFRQRI 364
           G  I + + VF +AEEMA+ +R+++
Sbjct: 441 GLFISDREKVFTEAEEMAKKYREKM 462

[Close]
BLAST of CmaCh06G015760 vs. TAIR 10
Match: AT3G23700.1 (Nucleic acid-binding proteins superfamily )

HSP 1 Score: 96.3 bits (238), Expect = 6.2e-20
Identity = 57/180 (31.67%), Postives = 100/180 (55.56%), Query Frame = 0 

Query: 177 WERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSTAEE---------- 236
           W+  +         +G+V   N GG++     L GF+P+ Q+S   + +E          
Sbjct: 97  WKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKEPQKSIHEIAK 156

Query: 237 -LLMKEIPLKFVEVDEEQSRLVLSNRKAVADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIG 296
            L+  ++P+K V+ DEE  +L+LS + A+    +Q + +G V  G V S++ YGAFI + 
Sbjct: 157 TLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSVEDYGAFIHLR 216

Query: 297 ------GVNGLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
                  + GL+HVS++S D + D+  VL+ GD ++V++ + D+E+ R++LS K+LE  P
Sbjct: 217 FDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRITLSIKQLEDDP 276

[Close]
BLAST of CmaCh06G015760 vs. TAIR 10
Match: AT5G14580.1 (polyribonucleotide nucleotidyltransferase, putative )

HSP 1 Score: 66.6 bits (161), Expect = 5.3e-11
Identity = 40/111 (36.04%), Postives = 60/111 (54.05%), Query Frame = 0 

Query: 237 VEVDEEQSRLVLSNRKAVADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDI-GGVN 296
           + +D     +V  N+  +  +Q Q        L +G V  GTV S+K YGAF++  GG  
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702

Query: 297 GLLHVSQISHDRISDIATVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTP 339
           GLLH+S++SH+ +S ++ VL  G  +  M +  D  RG + LS K L P P
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCIETD-VRGNIKLSRKALLPKP 752

[Close]
BLAST of CmaCh06G015760 vs. TAIR 10
Match: AT3G11964.1 (RNA binding;RNA binding )

HSP 1 Score: 60.5 bits (145), Expect = 3.8e-09
Identity = 43/151 (28.48%), Postives = 74/151 (49.01%), Query Frame = 0 

Query: 260  QLGIGSVVIGTVQSLKPYGAFIDIG--GVNGLLHVSQISHDRISDIATVLQPGDTLKVMI 319
            +L +G ++ G ++ ++P+G FIDI   G+ GL H+SQ+S DR+ ++    + G++++  I
Sbjct: 1431 KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVRAKI 1490

Query: 320  LSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAYAEAMARADMLKF 379
            L  D E+ R+SL  K      GD  +   L  +               +E +A  D   F
Sbjct: 1491 LKLDEEKKRISLGMKSSYLMNGDDDKAQPLSEDNTSMECDPIND--PKSEVLAAVDDFGF 1550

Query: 380  QPESGLTLTTDGILGPMTPELPVEGLDLNDV 409
            Q  SG T      +       P+E +DL+D+
Sbjct: 1551 QETSGGTSLVLAQVESRASIPPLE-VDLDDI 1578

The following BLAST results are available for this feature:
BLAST of CmaCh06G015760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P293441.5e-18881.8830S ribosomal protein S1, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS1 PE=... [more]
Q93VC73.2e-17878.1330S ribosomal protein S1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1 ... [more]
P462285.2e-8050.6830S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SA... [more]
P735305.4e-7748.4030S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803 / Kazus... [more]
O336983.5e-4434.4030S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805... [more]
BLAST of CmaCh06G015760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G30510.12.2e-17978.13ribosomal protein S1 [more]
AT1G71720.13.9e-2231.71Nucleic acid-binding proteins superfamily [more]
AT3G23700.16.2e-2031.67Nucleic acid-binding proteins superfamily [more]
AT5G14580.15.3e-1136.04polyribonucleotide nucleotidyltransferase, putative [more]
AT3G11964.13.8e-0928.48RNA binding;RNA binding [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022967RNA-binding domain, S1SMARTSM00316S1_6coord: 185..251
e-value: 7.5E-7
score: 38.8
coord: 97..169
e-value: 7.2E-7
score: 38.8
coord: 262..332
e-value: 2.0E-25
score: 100.4
NoneNo IPR availableGENE3D2.40.50.140coord: 82..180
e-value: 1.6E-9
score: 39.4
coord: 181..257
e-value: 3.3E-7
score: 32.0
NoneNo IPR availableGENE3D2.40.50.140coord: 258..336
e-value: 9.9E-23
score: 81.9
NoneNo IPR availablePANTHERPTHR10724:SF1130S RIBOSOMAL PROTEIN S1, CHLOROPLASTICcoord: 1..413
NoneNo IPR availablePANTHERPTHR1072430S RIBOSOMAL PROTEIN S1coord: 1..413
NoneNo IPR availableCDDcd05692S1_RPS1_repeat_hs4coord: 264..332
e-value: 6.4163E-31
score: 111.223
NoneNo IPR availableCDDcd05687S1_RPS1_repeat_ec1_hs1coord: 99..169
e-value: 5.9225E-13
score: 61.7763
NoneNo IPR availableCDDcd04465S1_RPS1_repeat_ec2_hs2coord: 198..251
e-value: 4.34766E-16
score: 70.5655
IPR003029S1 domainPFAMPF00575S1coord: 185..249
e-value: 1.2E-7
score: 32.0
coord: 263..332
e-value: 2.1E-17
score: 63.2
IPR003029S1 domainPROSITEPS50126S1coord: 264..332
score: 21.866022
IPR003029S1 domainPROSITEPS50126S1coord: 99..169
score: 12.731592
IPR003029S1 domainPROSITEPS50126S1coord: 187..251
score: 14.328993
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 94..195
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 182..255
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 263..342

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G015760.1CmaCh06G015760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003676 nucleic acid binding