CmaCh06G015620 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G015620
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein high chlorophyll fluorescent 107
Location	Cma_Chr06: 9785377 .. 9790681 (-)
RNA-Seq Expression	CmaCh06G015620
Synteny	CmaCh06G015620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAGCACCTACGAAAGCAAAATCACGCAGCTGAATCCGTTAAAAAAATTTCAGAGAAAAAAAAGGAAAAAAAATGCAAGTCTTCTCTTCATCTCCTTCAACCGCAAGCTTCAATCTGTTCTCTTCATCTCAAAATCCGAACAATCTCTCGAAATACAGATGCAAAAATTTGATTATACCTCTCCATTTCGCTCCGAGCTCCTTCTCCGTTTGCTGTTCTTCGAGGGAGTCCTCGACGGCGGTTCTCTCCTCCGATATTACGTTGGACGGCGAGAAAAGAGAGGCGTCGGAGGAGGTTCTTAGAGTTCGGCGGCCGGTAATGGAGTTTACCGGTGAAGATTCCGGCGACGGCGAGGAGGCGGAAGATGAGAGGAGTTCTTCGGTGATAGAACTAGGGCTAGCAGAGATTGCGAAGAAGATGCCGATATTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAAAGCGAAGATGATGGCGAGGAATTTTCTGTATGATGAAGCACGGCAAGTCCTTCAGAAGGTATTTTTCTCTCAGAAATTTAGGATTCCTTTATTAATTTTAATCCTTCGTAACTTCACAAAGTTAGTTTTTGGTTCTATTATATATGAAATTCAAAAAGTACTTTCAACTATTTAGAAGCATTTTTTTTTTATAATCAAATATTGGGGCTGAATTTAGCGCGTGATTTGGTTGGGAAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGATGTTGAGCAAGCAAATGAAAGCCGCCGACGCCAGAAATGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGCGAGAACTCCTACATTTGGCAGGTCAGTTTGAATCCTGCCTTTTATGAGCCCAAAGTTATCTCTCTAGTTTTTCCTGATGGTAGTAATAGTTTGTACATACAGGTTCCAAAGCTGTTGATTCGTTATCTCTCTAGTTTTTCCTGATGGTAGTAATAGTTTGTACATACAGGTTCCAAAGCTGTTGATTCAAGGTTATAGAAATCACACAATTATATATGATATTATCCATTTTGAGTATATAAACTCTCGTAGTTTTACTTTTGGTTTCCCCCAAAAGGCATCATACCAATGGAGATGTATTTCTTACTTATAAATCCAAGATCGTCTTCTTGATTAGCCAATGTGGGACTCCCTCCCAATAATCCTCCTCAAACAAAATACACCATAGAGCCTCCCTTGAGACCTATAAAGCCCTTGAACAACCTCCTCTTAATTGAGGCTTAACTCCTATCTCTGCTCGAACAAAGTACACCCTTTGTTCGACATTTGAGGATTCTATTGACATGTTGAGTTAAGGGCACAACTAGGAATCACGGACTTCCACAATGGTATGATATTGTCCACTTTGAGCATACGCTCTCATGAATGTGCTTTTAGTGACGGACTTCCACAATGGTATGATATTGTCCACTTTGAGCATACGCTCTCATGAATGTGCTTTTAGTGTCCCCAAGAGATTTCATGCTAATGGAGATGTATTTCTTACTTATAAATCCATTGATCGTCCTCTTAATTAGCAAGAGATTTCATGCTAATGGAGATGTATTTCTTACTTATAAATCCATTGATCGTCCTCTTAATTAGCCAATGTAGAACTCCCTCTCAACAATCTTCCACCCATTATATGCTAAACTTAGGGTCTCAAAACCCTTGTTGTCTCAGTATAGCTTTCTTGAAGACGAGTAGAGTGGAGTGTGAAAAAAAAGATCTTTTACCCTTGTTGTCTCAGTATAGCTTTCTTGAAGACGAGTAGAGTGGAGTGTGAAAAAAAAGATCTTTTTGTGTAAAACTGATACACCAATTCATAAGCAGTTTTGGTCAAAGAAACCAACTGAAACCGACCCGCTTACACCCCTTGATAGACCAAAAAAAAAAGCAGTTTTGGTCAAAGAAACCAACTGAAACCGACCCGCTTACACCCCTTGATAGACCAAAAAAAACAAGCTGAATTGGGCTATCATGAAATATTTGGAAACAGGTTTATGTTTCATCGTCTCAAATTTTAGCCACTAATTGCACACTTGATATAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAATATCAGGAAAGCAAGAGAGCTCTTTGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCCGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAGGGGAACCTCAAGAAGGCCAGGAATCTACTAGCCAAAGGCCTCAAATACTGTGGTGGGAATGAGTATATCTATCAAACACTCGCCCTGCTCGAAGCCAAATCGAATCGCTACGAGCAGGCGTGGGAATGAGTATATCTATCAAACACTCGCCCTGCTCGAAGCCAAATCGAATCGCTACGAGCAGGCACGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAAAGCTGTGCTAGTTGGCTTGTGAGTTCTTTTACATCCCATTGTCCATTGCCCTGATTCTGTTTTGAAATTTGATCATTACTTTCATCTCAGTTCTTTTACATCCCATTGTCCATTGCCCTGATTCTGTTTTGAAATTTGATCATTACTTTCATCTCCCAAATCCCCTCAGTAATTTGGACATGATCATGGTATGGCAGGCATGGGCGCAGCTGGAGATGCAGCGGGAGAACAACCTTCTTGCTAGACAACTATTTGAGGTGATTTTGATTTCCCTTCTCTTGTTTAACTGTTGATGAGTTCTTAGTAGATCCTTTCATTTCCCTCATTAACAAGTTCGTTTGTTTCTTTGTTACCTAGAAAGCCATCCAGGCGAGCCCCAAGAACAGATTTGCGTGGCACATATGGGGACTCTTTGAAGCTAATATAGGAAATATCGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCCTCTGCAAGCATGGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGACCCCAAGCACCAACCAGTGTGGATTGTATGTTAATATCCATTCCCTTGTAGAAGGATTTTCCACTCAAAATCTGATCAGATCTTTTGTTGAGGTTCCATTTTCCTTGACAAAACTTAAACCATGGCTTATGCAGGCTTGGGGATGGATGGAATGGAAAGAAGGTAACATAGGGAAGGCAAGGGAGCTGTATCAAAGAGCATTGTTAATTGACTCAGCTAGTGAGAGTGCAGCTCGATGCCTTCAGGTAGACAAATGCTCGTTGTTGAATTATAAATTTGGTTTCAAAATTTTGATGGTTAGCCTGGGCGTCGCACTGCAACGGCTCCAAACCCACTGCTAGCCAATATTGTTCTTTTTGGGCTTTCTCTTTCAAGCTTTCCCTCAAGGTTTTTAAAATGCATCTACTATGGAGAGGATCTAGTCCTACTTCAATCAGTGCCTCGCATCATTCAGTGACTGGCTCTGATACCATTTATAATAGTTCATGTCCACCAATAGTAGATATTGTCTGCTTTGACCCGTTACGTATCGCTGTCAGTCTCAAGGTTTTAAAACGCGCATGTTAGGGAGAGGTTTCCACAATCTTATAAAGAATGCTATGTTCCTCTCTCCAACTAATGTGAGATCTCACAACTCACCTTCCTTAGGGACCTAGCAACCTCATTAGCATACCGCTTGGAACTTGGCTCTGATACCATTTGTAACCTTCCTTAGGGACCTAGCAACCTCATTAGCATACCGCTTGGAACTTGGCTCTGATACCATTTGTAACAGTGCAAGCCTACCACTAGCAGATGTTGTCCTCTTTGGGTGGTGTGTCAACGAGGACGCTAGGCCCCCAAGGGGAGTGAATTGTGAGACACGTGTTTTAAAACCGTAAGGCTAACGGTGATACGCAACATGCCAAAGTGGACAATATCTGTTAGCGGTGAGTTTGGATTGTTACAAATGGTATCAGAGCCTGTTCAATGAACAGTGTGCCAACAAGGACACTGGACCCCCAAGGAGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGGGAACGAAGCATTCCTTATAAGGGTGTGGAAATCATTTCCTAACAAACACGCTTTAAAACTGTAAGGTTGACGGGGATATGTAACGAGCCAAAATGGACTAGCGGTAAACTTGGGCTGTTACACGGTTACAAACATTGCAAGATGGATGATTGGTAGGAGGAAGTTGAGCGGTAAACTTGGGCTGTTACACGGTTACAAACATTGCAAGATGGATGATTGGTAGGAGGAAGTTGAAAATGATAGGAATACTTGTTGGAGTCATGTTCTAATTTTGTTATCTAAGTTCGAGAACCTTTAATTTCTGCTTGGAATCGAAATATTACTTACTTTGATTGCTTTAATACAGGCTTGGGGTGTTCTAGAACAGAGAGCAGGCAACCTATCAGCAGCTAGAAGATTATATAGATCCTCTCTAAGCATAAACTCTCAGAGTTATGTAACATGGATGACCTGGGCAGCACTGGAAGATGATCAAGGGAACGCAATCCGAGCGGAGGAAATTCGAAATCTATACTTCCAGCAGGTCAGAACCTTGTTTTTTGAAATTTGAGTTAGTTTTTCTGAACCACTGTTAAGTAAATGAAGGCAGTGTTGCAACAGAGAACAGAAGTTGTGGATGATGCTTCGTGGGTTATGGGGATCTTAGACGTTATTGACCCAGCACTTGATAGCATAAAGAGGCTGTTGAAGCTGGAGCAAGACCCCTTCGCCATGTCAAGAGTAGCAGATGGAGGCGCTAGAAACAGCTCTTTAGACGACTCGGGTGCCTCCTCTAGTGTGGCTGACAGTGAAACTGGGTTTGATTTGGATGCCTTTATGATGAAAAAGTTGTCGATAGACACGTCGAAACTCGAAATTCAACTCGAAACAACTCGACCCAAAAGATTTAAGTATCAAAGAAGTCAAATGAGATCAGAAAACAGACCAGAAATGGCTGTTTCACAGAGCCAAAGAACAGCATCTTCATCTACTTGAGGATCGATCTTATAGTTCATTCCAGAGAAAACAAGGTTCTTAATGGAACAAATGTTTTGTAAGTCTAAGCTTCCCTCGTTCATAAAGTTATTATTATAGCTGCAAGGATCAAGGAAGAAAACACTTCTTTGATGGAGTTCTACATGTCTAAAAGAAGCCATAATGTAAATAACTTCGTAAGTTTATAATTCTTGAGGTTCTCTGAGTCTGATCTCTCTAGTGCTTCTTAATGGTTTGAG

mRNA sequence

AGAGCACCTACGAAAGCAAAATCACGCAGCTGAATCCGTTAAAAAAATTTCAGAGAAAAAAAAGGAAAAAAAATGCAAGTCTTCTCTTCATCTCCTTCAACCGCAAGCTTCAATCTGTTCTCTTCATCTCAAAATCCGAACAATCTCTCGAAATACAGATGCAAAAATTTGATTATACCTCTCCATTTCGCTCCGAGCTCCTTCTCCGTTTGCTGTTCTTCGAGGGAGTCCTCGACGGCGGTTCTCTCCTCCGATATTACGTTGGACGGCGAGAAAAGAGAGGCGTCGGAGGAGGTTCTTAGAGTTCGGCGGCCGGTAATGGAGTTTACCGGTGAAGATTCCGGCGACGGCGAGGAGGCGGAAGATGAGAGGAGTTCTTCGGTGATAGAACTAGGGCTAGCAGAGATTGCGAAGAAGATGCCGATATTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAAAGCGAAGATGATGGCGAGGAATTTTCTGTATGATGAAGCACGGCAAGTCCTTCAGAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGATGTTGAGCAAGCAAATGAAAGCCGCCGACGCCAGAAATGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGCGAGAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAATATCAGGAAAGCAAGAGAGCTCTTTGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCCGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAGGGGAACCTCAAGAAGGCCAGGAATCTACTAGCCAAAGGCCTCAAATACTGTGGTGGGAATGAGCGTGGGAATGAGTATATCTATCAAACACTCGCCCTGCTCGAAGCCAAATCGAATCGCTACGAGCAGGCACGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAAAGCTGTGCTAGTTGGCTTGCATGGGCGCAGCTGGAGATGCAGCGGGAGAACAACCTTCTTGCTAGACAACTATTTGAGAAAGCCATCCAGGCGAGCCCCAAGAACAGATTTGCGTGGCACATATGGGGACTCTTTGAAGCTAATATAGGAAATATCGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCCTCTGCAAGCATGGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGACCCCAAGCACCAACCAGTGTGGATTGCTTGGGGATGGATGGAATGGAAAGAAGGTAACATAGGGAAGGCAAGGGAGCTGTATCAAAGAGCATTGTTAATTGACTCAGCTAGTGAGAGTGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTAGAACAGAGAGCAGGCAACCTATCAGCAGCTAGAAGATTATATAGATCCTCTCTAAGCATAAACTCTCAGAGTTATGTAACATGGATGACCTGGGCAGCACTGGAAGATGATCAAGGGAACGCAATCCGAGCGGAGGAAATTCGAAATCTATACTTCCAGCAGAGAACAGAAGTTGTGGATGATGCTTCGTGGGTTATGGGGATCTTAGACGTTATTGACCCAGCACTTGATAGCATAAAGAGGCTGTTGAAGCTGGAGCAAGACCCCTTCGCCATGTCAAGAGTAGCAGATGGAGGCGCTAGAAACAGCTCTTTAGACGACTCGGGTGCCTCCTCTAGTGTGGCTGACAGTGAAACTGGGTTTGATTTGGATGCCTTTATGATGAAAAAGTTGTCGATAGACACGTCGAAACTCGAAATTCAACTCGAAACAACTCGACCCAAAAGATTTAAGTATCAAAGAAGTCAAATGAGATCAGAAAACAGACCAGAAATGGCTGTTTCACAGAGCCAAAGAACAGCATCTTCATCTACTTGAGGATCGATCTTATAGTTCATTCCAGAGAAAACAAGGTTCTTAATGGAACAAATGTTTTGTAAGTCTAAGCTTCCCTCGTTCATAAAGTTATTATTATAGCTGCAAGGATCAAGGAAGAAAACACTTCTTTGATGGAGTTCTACATGTCTAAAAGAAGCCATAATGTAAATAACTTCGTAAGTTTATAATTCTTGAGGTTCTCTGAGTCTGATCTCTCTAGTGCTTCTTAATGGTTTGAG

Coding sequence (CDS)

ATGCAAGTCTTCTCTTCATCTCCTTCAACCGCAAGCTTCAATCTGTTCTCTTCATCTCAAAATCCGAACAATCTCTCGAAATACAGATGCAAAAATTTGATTATACCTCTCCATTTCGCTCCGAGCTCCTTCTCCGTTTGCTGTTCTTCGAGGGAGTCCTCGACGGCGGTTCTCTCCTCCGATATTACGTTGGACGGCGAGAAAAGAGAGGCGTCGGAGGAGGTTCTTAGAGTTCGGCGGCCGGTAATGGAGTTTACCGGTGAAGATTCCGGCGACGGCGAGGAGGCGGAAGATGAGAGGAGTTCTTCGGTGATAGAACTAGGGCTAGCAGAGATTGCGAAGAAGATGCCGATATTTGAACCGGAGAATCGGGTGGATTCGAGTGCCCTAGAAAGGCCGCTGATTATCAATTTGGATTTGGCGTTGTACAAAGCGAAGATGATGGCGAGGAATTTTCTGTATGATGAAGCACGGCAAGTCCTTCAGAAGTGTATAGATAAATGGCCGGAGGATGGGCGGGCATACGTAGCATTGGGGAAGATGTTGAGCAAGCAAATGAAAGCCGCCGACGCCAGAAATGTGTATGAGAGAGGCTGCCAAGCCACCCAAGGCGAGAACTCCTACATTTGGCAGTGCTGGGCTGTTCTGGAGAGCAGGATGGGGAATATCAGGAAAGCAAGAGAGCTCTTTGATGCAGCCACAGTAGCCAACAAGAAGCACATTGCCGCATGGCATGGCTGGGCTGTGCTAGAGCTAAAGCAGGGGAACCTCAAGAAGGCCAGGAATCTACTAGCCAAAGGCCTCAAATACTGTGGTGGGAATGAGCGTGGGAATGAGTATATCTATCAAACACTCGCCCTGCTCGAAGCCAAATCGAATCGCTACGAGCAGGCACGTTATTTGTTTAAGCAGGCTACCAAGTGCAACCCCAAAAGCTGTGCTAGTTGGCTTGCATGGGCGCAGCTGGAGATGCAGCGGGAGAACAACCTTCTTGCTAGACAACTATTTGAGAAAGCCATCCAGGCGAGCCCCAAGAACAGATTTGCGTGGCACATATGGGGACTCTTTGAAGCTAATATAGGAAATATCGAGAAGGGAAGGAAACTTTTAAAGATAGGCCATGTCCTAAATCCAAGAGACCCTGTTCTTCTTCAGTCTCTTGGTTTATTGGAGTATAAGAACTCCTCTGCAAGCATGGCTCGAGTTTTGTTTAGGAGAGCATCTGAACTGGACCCCAAGCACCAACCAGTGTGGATTGCTTGGGGATGGATGGAATGGAAAGAAGGTAACATAGGGAAGGCAAGGGAGCTGTATCAAAGAGCATTGTTAATTGACTCAGCTAGTGAGAGTGCAGCTCGATGCCTTCAGGCTTGGGGTGTTCTAGAACAGAGAGCAGGCAACCTATCAGCAGCTAGAAGATTATATAGATCCTCTCTAAGCATAAACTCTCAGAGTTATGTAACATGGATGACCTGGGCAGCACTGGAAGATGATCAAGGGAACGCAATCCGAGCGGAGGAAATTCGAAATCTATACTTCCAGCAGAGAACAGAAGTTGTGGATGATGCTTCGTGGGTTATGGGGATCTTAGACGTTATTGACCCAGCACTTGATAGCATAAAGAGGCTGTTGAAGCTGGAGCAAGACCCCTTCGCCATGTCAAGAGTAGCAGATGGAGGCGCTAGAAACAGCTCTTTAGACGACTCGGGTGCCTCCTCTAGTGTGGCTGACAGTGAAACTGGGTTTGATTTGGATGCCTTTATGATGAAAAAGTTGTCGATAGACACGTCGAAACTCGAAATTCAACTCGAAACAACTCGACCCAAAAGATTTAAGTATCAAAGAAGTCAAATGAGATCAGAAAACAGACCAGAAATGGCTGTTTCACAGAGCCAAAGAACAGCATCTTCATCTACTTGA

Protein sequence

MQVFSSSPSTASFNLFSSSQNPNNLSKYRCKNLIIPLHFAPSSFSVCCSSRESSTAVLSSDITLDGEKREASEEVLRVRRPVMEFTGEDSGDGEEAEDERSSSVIELGLAEIAKKMPIFEPENRVDSSALERPLIINLDLALYKAKMMARNFLYDEARQVLQKCIDKWPEDGRAYVALGKMLSKQMKAADARNVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAARRLYRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGILDVIDPALDSIKRLLKLEQDPFAMSRVADGGARNSSLDDSGASSSVADSETGFDLDAFMMKKLSIDTSKLEIQLETTRPKRFKYQRSQMRSENRPEMAVSQSQRTASSST

Homology

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BLAST of CmaCh06G015620 vs. ExPASy Swiss-Prot
Match: Q8RWG2 (Protein high chlorophyll fluorescent 107 OS=Arabidopsis thaliana OX=3702 GN=HCF107 PE=1 SV=1)

HSP 1 Score: 755.7 bits (1950), Expect = 4.1e-217
Identity = 402/643 (62.52%), Postives = 488/643 (75.89%), Query Frame = 0


Query: 5   SSSPS---TASFNL-FSSSQNPNNLSKYRCK------------NLIIPLHFAPSSFSVCC 64
           SSSPS   T+SF+L F + Q P NL K   K             L  P   + +++    
Sbjct: 11  SSSPSPANTSSFSLSFLTPQIPENLCKSPTKIHIGTHGISGQSFLSHPTFSSKNTYLYAV 70

Query: 65  SSRESSTAVLSSDITLDGEKREASEE--VLRVRRPVMEFTGEDSGDGEEAEDERSSSVIE 124
             R SS        + +GE  E++ E  VL VRRP++E + ++S    E E ++  + I+
Sbjct: 71  VDRSSSGVFSPQKESANGEGEESNTEEGVLVVRRPLLENSDKES---SEEEGKKYPARID 130

Query: 125 LGLAEIAKKMPIFEPENRVDSS---------ALERPLIINLDLALYKAKMMARNFLYDEA 184
            GL+ IAKKMPIFEPE    SS         A ERPL +NLDL+LYKAK++ARNF Y +A
Sbjct: 131 AGLSNIAKKMPIFEPERSESSSSSSAAAAARAQERPLAVNLDLSLYKAKVLARNFRYKDA 190

Query: 185 RQVLQKCIDKWPEDGRAYVALGKMLSKQMKAADARNVYERGCQATQGENSYIWQCWAVLE 244
            ++L+KCI  WPEDGR YVALGK+LSKQ K A+AR +YE+GCQ+TQGENSYIWQCWAVLE
Sbjct: 191 EKILEKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLE 250

Query: 245 SRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERG 304
           +R+GN+R+ARELFDAATVA+KKH+AAWHGWA LE+KQGN+ KARNLLAKGLK+CG     
Sbjct: 251 NRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCG----R 310

Query: 305 NEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFE 364
           NEYIYQTLALLEAK+ RYEQARYLFKQAT CN +SCASWLAWAQLE+Q+E    AR+LFE
Sbjct: 311 NEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFE 370

Query: 365 KAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSA 424
           KA+QASPKNRFAWH+WG+FEA +GN+E+GRKLLKIGH LNPRDPVLLQSLGLLEYK+SSA
Sbjct: 371 KAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSA 430

Query: 425 SMARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQA 484
           ++AR L RRASELDP+HQPVWIAWGWMEWKEGN   ARELYQRAL ID+ +ESA+RCLQA
Sbjct: 431 NLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQA 490

Query: 485 WGVLEQRAGNLSAARRLYRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRT 544
           WGVLEQRAGNLSAARRL+RSSL+INSQSYVTWMTWA LE+DQG+  RAEEIRNLYFQQRT
Sbjct: 491 WGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLYFQQRT 550

Query: 545 EVVDDASWVMGILDVIDPALDSIKRLLKLEQDP---------FAMSRVADGGARNSSLDD 604
           EVVDDASWV G LD+IDPALD++KRLL   Q+            M+R  D  ++++   +
Sbjct: 551 EVVDDASWVTGFLDIIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNRTKD--SQSNQQPE 610

Query: 605 SGASSSVADSETGFDLDAFMMKKLSIDTSKLEIQLETTRPKRF 612
           S A     ++ +GF+LD F+  KLS+D  KL++ L++ R +RF
Sbjct: 611 SSAGREDIETGSGFNLDVFLRSKLSLDPLKLDVNLDSKRLERF 644

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BLAST of CmaCh06G015620 vs. ExPASy Swiss-Prot
Match: Q9FNS4 (PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=MBB1 PE=2 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 5.2e-71
Identity = 189/586 (32.25%), Postives = 282/586 (48.12%), Query Frame = 0


Query: 36  PLHFAPSSFSVCCSSR-------ESSTAVLSSDITLDGEKREASEEVLRVRRPV-----M 95
           P+  A SS S   SSR        S T V  +        + A   V R   PV      
Sbjct: 18  PVEQASSSSSSSSSSRRTWYAPARSQTGVQVAAYEPTAVLQLAPSAVSRRSTPVRSSIIA 77

Query: 96  EFTGEDSGDGEEAEDERSSSVIELGLAEIAKKMPIFEPENRVDSSALERPLIINLDLALY 155
           + +   SGDGE    + + S  E   A        F   ++V        L IN+DL L+
Sbjct: 78  DLSSSGSGDGEGERGDATGSRDEASSA--------FAGSSKV--------LKINIDLLLW 137

Query: 156 KAK-----------MMARNFLYDEARQVLQKCIDKWPEDGRAYVALGKMLSKQMKAADAR 215
           + +           +  R  LY  A   L++C+   P D RAYV LGK L +Q +  +AR
Sbjct: 138 RCRTSRIRARQTLDLNERKSLYKAAEDGLRRCLALDPADPRAYVVLGKTLVQQKRYDEAR 197

Query: 216 NVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFDAATVANKKHIAAWHGWAVLEL 275
            +Y+ GC  T   N YIW  W  LE+R GN+ +AR+L+DAA V +  H  AWH W +LE 
Sbjct: 198 QLYQDGCANTGNVNPYIWSAWGWLEARTGNVERARKLYDAAVVVDGTHACAWHKWGMLEK 257

Query: 276 KQGNLKKARNLLAKGLKYCGGNERG-NEYIYQTLALLEAKSNRYEQARYLFKQATKC--N 335
            QGN  +AR+L  +G++ C    +  N Y+Y  L  + A+  R  +AR  F++ T+    
Sbjct: 258 GQGNFTRARDLWMQGIQRCRRKPQSQNAYLYNALGCMAAQLGRVGEARSWFEEGTRSAEG 317

Query: 336 PKSCASWLAWAQLEMQRENNLLARQLFEKAIQASPKNRFAWHIWGLFEANIGNIEKGRKL 395
             S A W AWA LE ++ +  + R LF KA+ A+P++R+    W L+E   GN +    L
Sbjct: 318 AASVALWQAWAVLEAKQGDPTVVRYLFRKALGANPRSRYVHLAWALWERRQGNPQHCLAL 377

Query: 396 LKIGHVLNPRDPVLLQSLGLLEYKNSSASMARVLFRRASELDPKHQPVWIAWGWMEWKEG 455
           L+ G  LNP DP L Q+  L+E +      AR LF +    DP    +W A+G ME ++G
Sbjct: 378 LRRGCELNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPSDLYMWQAYGVMEAEQG 437

Query: 456 NIGKARELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAARRLYRSSLSINSQSYVTW 515
           N+ +AR+L+Q  +  D  S S      AWG LE +AGN+  AR L+++++ ++ +S  TW
Sbjct: 438 NMDRARQLFQEGVWADPRSPSTVYVFHAWGALEWQAGNVQTARELFKAAVRVDPKSETTW 497

Query: 516 MTWAALEDDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGILDVIDPALDSIKRLLKLEQD 575
            +W A+E + G   R +E+R    +++ E V  A +         PA   +  L +    
Sbjct: 498 ASWIAMESELGEIERVDELRIRQAERQWEFVVPAGF------TTRPAPGLVDTLAR---- 557

Query: 576 PFAMSRVADGGARNSSLDDSGASSSVADSETGFDLDAFMMKKLSID 596
            F  +R        SS  + GA    A SE    + A     L++D
Sbjct: 558 -FFSARGFGSDGNGSSSSNGGAGGQQAGSEAAAGIRAADSVDLTVD 576

[Close]

BLAST of CmaCh06G015620 vs. ExPASy Swiss-Prot
Match: Q9HF03 (Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) OX=235443 GN=CLF1 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-13
Identity = 71/276 (25.72%), Postives = 124/276 (44.93%), Query Frame = 0


Query: 289 EAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQASPKNRF 348
           EA  N YE++R +F++A   +P+S   W+ +  +E++  N   AR LF++AI   P+   
Sbjct: 85  EASQNEYERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITLLPRVDA 144

Query: 349 AWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARVLFRR-- 408
            W+ +   E  + N+   R++ +      P D    QS   LE + +    A  ++ R  
Sbjct: 145 LWYKYVYLEELLLNVSGARQIFERWMQWEPNDKA-WQSYIKLEERYNELDRASAIYERWI 204

Query: 409 ASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLI----DSASESAARCLQAWGVLE 468
           A    PK+   W+AW   E   G   KARE++Q AL      +   E A     A+  +E
Sbjct: 205 ACRPIPKN---WVAWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFAAFARME 264

Query: 469 QRAGNLSAARRLYRSSLS--INSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRTEVV 528
            R      AR +Y+ +L+    S+S   +  +   E   G+  RA     +  ++R +  
Sbjct: 265 TRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQHGD--RAGVELTVLGKRRIQYE 324

Query: 529 DDASWVMGILDVIDPA-LDSIKRLLKLEQDPFAMSR 556
           ++ ++        DP   D+   L +LE+D +   R
Sbjct: 325 EELAY--------DPTNYDAWFSLARLEEDAYRADR 346

[Close]

BLAST of CmaCh06G015620 vs. ExPASy Swiss-Prot
Match: P0CO11 (Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=CLF1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-13
Identity = 83/342 (24.27%), Postives = 149/342 (43.57%), Query Frame = 0


Query: 223 IRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERGNEYIY 282
           +R+A+E  + A  A K+ +       + EL +   +K R      ++Y     R +   +
Sbjct: 29  LREAQERQEPAIQAPKQRVQ-----DLEELSEFQARK-RTEFESRIRY----SRDSILAW 88

Query: 283 QTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQA 342
              A  EA  N YE++R +F++A   +P+S   W+ +  +E++  N   AR LF++AI  
Sbjct: 89  TKYAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITL 148

Query: 343 SPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARV 402
            P+    W+ +   E  + N+   R++ +      P D    QS   LE + +    A  
Sbjct: 149 LPRVDALWYKYVYLEELLLNVSGARQIFERWMQWEPNDKA-WQSYIKLEERYNELDRASA 208

Query: 403 LFRR--ASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLI----DSASESAARCLQ 462
           ++ R  A    PK+   W+ W   E   G   KARE++Q AL      +   E A     
Sbjct: 209 IYERWIACRPIPKN---WVTWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFA 268

Query: 463 AWGVLEQRAGNLSAARRLYRSSLS--INSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQ 522
           A+  +E R      AR +Y+ +L+    S+S   +  +   E   G+  RA     +  +
Sbjct: 269 AFARMETRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQHGD--RAGVELTVLGK 328

Query: 523 QRTEVVDDASWVMGILDVIDPA-LDSIKRLLKLEQDPFAMSR 556
           +R +  ++ ++        DP   D+   L +LE+D +   R
Sbjct: 329 RRIQYEEELAY--------DPTNYDAWFSLARLEEDAYRADR 346

[Close]

BLAST of CmaCh06G015620 vs. ExPASy Swiss-Prot
Match: P0CO10 (Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=CLF1 PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 3.8e-13
Identity = 83/342 (24.27%), Postives = 149/342 (43.57%), Query Frame = 0


Query: 223 IRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERGNEYIY 282
           +R+A+E  + A  A K+ +       + EL +   +K R      ++Y     R +   +
Sbjct: 29  LREAQERQEPAIQAPKQRVQ-----DLEELSEFQARK-RTEFESRIRY----SRDSILAW 88

Query: 283 QTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQA 342
              A  EA  N YE++R +F++A   +P+S   W+ +  +E++  N   AR LF++AI  
Sbjct: 89  TKYAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYTDMELKARNINHARNLFDRAITL 148

Query: 343 SPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARV 402
            P+    W+ +   E  + N+   R++ +      P D    QS   LE + +    A  
Sbjct: 149 LPRVDALWYKYVYLEELLLNVSGARQIFERWMQWEPNDKA-WQSYIKLEERYNELDRASA 208

Query: 403 LFRR--ASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLI----DSASESAARCLQ 462
           ++ R  A    PK+   W+ W   E   G   KARE++Q AL      +   E A     
Sbjct: 209 IYERWIACRPIPKN---WVTWAKFEEDRGQPDKAREVFQTALEFFGDEEEQVEKAQSVFA 268

Query: 463 AWGVLEQRAGNLSAARRLYRSSLS--INSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQ 522
           A+  +E R      AR +Y+ +L+    S+S   +  +   E   G+  RA     +  +
Sbjct: 269 AFARMETRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQHGD--RAGVELTVLGK 328

Query: 523 QRTEVVDDASWVMGILDVIDPA-LDSIKRLLKLEQDPFAMSR 556
           +R +  ++ ++        DP   D+   L +LE+D +   R
Sbjct: 329 RRIQYEEELAY--------DPTNYDAWFSLARLEEDAYRADR 346

[Close]

BLAST of CmaCh06G015620 vs. TAIR 10
Match: AT3G17040.2 (high chlorophyll fluorescent 107 )

HSP 1 Score: 756.1 bits (1951), Expect = 2.2e-218
Identity = 400/629 (63.59%), Postives = 482/629 (76.63%), Query Frame = 0


Query: 5   SSSPS---TASFNL-FSSSQNPNNLSKYRCKNLIIPLHFAPSSFSVCCSSRESSTAVLSS 64
           SSSPS   T+SF+L F + Q P NL   R            SS  V    +ES+      
Sbjct: 11  SSSPSPANTSSFSLSFLTPQIPENLFVDR------------SSSGVFSPQKESANG---- 70

Query: 65  DITLDGEKREASEEVLRVRRPVMEFTGEDSGDGEEAEDERSSSVIELGLAEIAKKMPIFE 124
               +GE+    E VL VRRP++E + ++S    E E ++  + I+ GL+ IAKKMPIFE
Sbjct: 71  ----EGEESNTEEGVLVVRRPLLENSDKES---SEEEGKKYPARIDAGLSNIAKKMPIFE 130

Query: 125 PENRVDSS---------ALERPLIINLDLALYKAKMMARNFLYDEARQVLQKCIDKWPED 184
           PE    SS         A ERPL +NLDL+LYKAK++ARNF Y +A ++L+KCI  WPED
Sbjct: 131 PERSESSSSSSAAAAARAQERPLAVNLDLSLYKAKVLARNFRYKDAEKILEKCIAYWPED 190

Query: 185 GRAYVALGKMLSKQMKAADARNVYERGCQATQGENSYIWQCWAVLESRMGNIRKARELFD 244
           GR YVALGK+LSKQ K A+AR +YE+GCQ+TQGENSYIWQCWAVLE+R+GN+R+ARELFD
Sbjct: 191 GRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLGNVRRARELFD 250

Query: 245 AATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERGNEYIYQTLALLEAK 304
           AATVA+KKH+AAWHGWA LE+KQGN+ KARNLLAKGLK+CG     NEYIYQTLALLEAK
Sbjct: 251 AATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCG----RNEYIYQTLALLEAK 310

Query: 305 SNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQASPKNRFAWH 364
           + RYEQARYLFKQAT CN +SCASWLAWAQLE+Q+E    AR+LFEKA+QASPKNRFAWH
Sbjct: 311 AGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAVQASPKNRFAWH 370

Query: 365 IWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARVLFRRASELD 424
           +WG+FEA +GN+E+GRKLLKIGH LNPRDPVLLQSLGLLEYK+SSA++AR L RRASELD
Sbjct: 371 VWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLARALLRRASELD 430

Query: 425 PKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAA 484
           P+HQPVWIAWGWMEWKEGN   ARELYQRAL ID+ +ESA+RCLQAWGVLEQRAGNLSAA
Sbjct: 431 PRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQAWGVLEQRAGNLSAA 490

Query: 485 RRLYRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRTEVVDDASWVMGILD 544
           RRL+RSSL+INSQSYVTWMTWA LE+DQG+  RAEEIRNLYFQQRTEVVDDASWV G LD
Sbjct: 491 RRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLYFQQRTEVVDDASWVTGFLD 550

Query: 545 VIDPALDSIKRLLKLEQDP---------FAMSRVADGGARNSSLDDSGASSSVADSETGF 604
           +IDPALD++KRLL   Q+            M+R  D  ++++   +S A     ++ +GF
Sbjct: 551 IIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNRTKD--SQSNQQPESSAGREDIETGSGF 610

Query: 605 DLDAFMMKKLSIDTSKLEIQLETTRPKRF 612
           +LD F+  KLS+D  KL++ L++ R +RF
Sbjct: 611 NLDVFLRSKLSLDPLKLDVNLDSKRLERF 610

[Close]

BLAST of CmaCh06G015620 vs. TAIR 10
Match: AT3G17040.1 (high chlorophyll fluorescent 107 )

HSP 1 Score: 755.7 bits (1950), Expect = 2.9e-218
Identity = 402/643 (62.52%), Postives = 488/643 (75.89%), Query Frame = 0


Query: 5   SSSPS---TASFNL-FSSSQNPNNLSKYRCK------------NLIIPLHFAPSSFSVCC 64
           SSSPS   T+SF+L F + Q P NL K   K             L  P   + +++    
Sbjct: 11  SSSPSPANTSSFSLSFLTPQIPENLCKSPTKIHIGTHGISGQSFLSHPTFSSKNTYLYAV 70

Query: 65  SSRESSTAVLSSDITLDGEKREASEE--VLRVRRPVMEFTGEDSGDGEEAEDERSSSVIE 124
             R SS        + +GE  E++ E  VL VRRP++E + ++S    E E ++  + I+
Sbjct: 71  VDRSSSGVFSPQKESANGEGEESNTEEGVLVVRRPLLENSDKES---SEEEGKKYPARID 130

Query: 125 LGLAEIAKKMPIFEPENRVDSS---------ALERPLIINLDLALYKAKMMARNFLYDEA 184
            GL+ IAKKMPIFEPE    SS         A ERPL +NLDL+LYKAK++ARNF Y +A
Sbjct: 131 AGLSNIAKKMPIFEPERSESSSSSSAAAAARAQERPLAVNLDLSLYKAKVLARNFRYKDA 190

Query: 185 RQVLQKCIDKWPEDGRAYVALGKMLSKQMKAADARNVYERGCQATQGENSYIWQCWAVLE 244
            ++L+KCI  WPEDGR YVALGK+LSKQ K A+AR +YE+GCQ+TQGENSYIWQCWAVLE
Sbjct: 191 EKILEKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLE 250

Query: 245 SRMGNIRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERG 304
           +R+GN+R+ARELFDAATVA+KKH+AAWHGWA LE+KQGN+ KARNLLAKGLK+CG     
Sbjct: 251 NRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQGNISKARNLLAKGLKFCG----R 310

Query: 305 NEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFE 364
           NEYIYQTLALLEAK+ RYEQARYLFKQAT CN +SCASWLAWAQLE+Q+E    AR+LFE
Sbjct: 311 NEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFE 370

Query: 365 KAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSA 424
           KA+QASPKNRFAWH+WG+FEA +GN+E+GRKLLKIGH LNPRDPVLLQSLGLLEYK+SSA
Sbjct: 371 KAVQASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSA 430

Query: 425 SMARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCLQA 484
           ++AR L RRASELDP+HQPVWIAWGWMEWKEGN   ARELYQRAL ID+ +ESA+RCLQA
Sbjct: 431 NLARALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRALSIDANTESASRCLQA 490

Query: 485 WGVLEQRAGNLSAARRLYRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEIRNLYFQQRT 544
           WGVLEQRAGNLSAARRL+RSSL+INSQSYVTWMTWA LE+DQG+  RAEEIRNLYFQQRT
Sbjct: 491 WGVLEQRAGNLSAARRLFRSSLNINSQSYVTWMTWAQLEEDQGDTERAEEIRNLYFQQRT 550

Query: 545 EVVDDASWVMGILDVIDPALDSIKRLLKLEQDP---------FAMSRVADGGARNSSLDD 604
           EVVDDASWV G LD+IDPALD++KRLL   Q+            M+R  D  ++++   +
Sbjct: 551 EVVDDASWVTGFLDIIDPALDTVKRLLNFGQNNDNNRLTTTLRNMNRTKD--SQSNQQPE 610

Query: 605 SGASSSVADSETGFDLDAFMMKKLSIDTSKLEIQLETTRPKRF 612
           S A     ++ +GF+LD F+  KLS+D  KL++ L++ R +RF
Sbjct: 611 SSAGREDIETGSGFNLDVFLRSKLSLDPLKLDVNLDSKRLERF 644

[Close]

BLAST of CmaCh06G015620 vs. TAIR 10
Match: AT3G51110.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-11
Identity = 72/299 (24.08%), Postives = 137/299 (45.82%), Query Frame = 0


Query: 223 IRKARELFDAATVANKKHIAAWHGWAVLELKQGNLKKARNLLAKGLKYCGGNERGNEYIY 282
           +R+ +E  D    A K +   W  +A  E  Q +  +AR++  + L+        N  ++
Sbjct: 54  LRRRKEFEDQIRGA-KTNSQVWVRYADWEESQKDHDRARSVWERALE---DESYRNHTLW 113

Query: 283 QTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQLFEKAIQA 342
              A  E ++     AR ++ +A K  P+    W  +  +E    N   AR++FE+ +  
Sbjct: 114 LKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDW 173

Query: 343 SPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNSSASMARV 402
           SP  + AW  +  FE     IE+ R + +   + +P+    ++     E KNS  S+AR+
Sbjct: 174 SPDQQ-AWLCFIKFELRYNEIERSRSIYERFVLCHPKASSFIR-YAKFEMKNSQVSLARI 233

Query: 403 LFRRASEL----DPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCL-QA 462
           ++ RA E+    + + + +++A+   E     + +AR LY+ AL  D   +  A  L + 
Sbjct: 234 VYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYAL--DHIPKGRAEDLYKK 293

Query: 463 WGVLEQRAGN-------LSAARRL-YRSSLSINSQSYVTWMTWAALEDDQGNAIRAEEI 509
           +   E++ GN       +   R+L Y   +  N  +Y +W  + +LE+  G+  R  E+
Sbjct: 294 FVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREV 344

[Close]

BLAST of CmaCh06G015620 vs. TAIR 10
Match: AT5G41770.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-09
Identity = 49/204 (24.02%), Postives = 94/204 (46.08%), Query Frame = 0


Query: 276 RGNEYIYQTLALLEAKSNRYEQARYLFKQATKCNPKSCASWLAWAQLEMQRENNLLARQL 335
           R N  ++   A  E     Y +AR ++++A + + ++   WL +A+ EM+ +    AR +
Sbjct: 89  RWNIQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNV 148

Query: 336 FEKAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHVLNPRDPVLLQSLGLLEYKNS 395
           +++A+   P+    W+ +   E  +GNI   R++ +     +P     L S    E + +
Sbjct: 149 WDRAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWL-SFIKFELRYN 208

Query: 396 SASMARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKARELYQRALLIDSASESAARCL 455
               AR ++ R     PK    +I +   E K G + + R +Y+RA    +  E A    
Sbjct: 209 EIERARTIYERFVLCHPK-VSAYIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILF 268

Query: 456 QAWGVLEQRAGNLSAARRLYRSSL 480
            A+   E+R   +  AR +Y+ +L
Sbjct: 269 VAFAEFEERCKEVERARFIYKFAL 290

[Close]

BLAST of CmaCh06G015620 vs. TAIR 10
Match: AT5G45990.1 (crooked neck protein, putative / cell cycle protein, putative )

HSP 1 Score: 51.6 bits (122), Expect = 2.7e-06
Identity = 41/185 (22.16%), Postives = 82/185 (44.32%), Query Frame = 0


Query: 316 WLAWAQLEMQRENNLLARQLFEKAIQASPKNRFAWHIWGLFEANIGNIEKGRKLLKIGHV 375
           W+ +A+ E  + +   AR ++E+A++   +N   W  +  FE     +   R +      
Sbjct: 81  WVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVT 140

Query: 376 LNPRDPVLLQSLGLLEYKNSSASMARVLFRRASELDPKHQPVWIAWGWMEWKEGNIGKAR 435
           L PR   L +    +E K  + + AR +F R     P  Q  W+ +   E +   I +AR
Sbjct: 141 LLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSP-DQKAWLCFIKFELRYNEIERAR 200

Query: 436 ELYQRALLIDSASESAARCLQAWGVLEQRAGNLSAARRLYR---SSLSINSQSYVTWMTW 495
            +Y+R +L      +  R  +      +R G +  AR +Y      L+ + ++ + ++++
Sbjct: 201 SIYERFVLCHPKVSAFIRYAK---FEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSF 260

Query: 496 AALED 498
           A  E+
Sbjct: 261 AEFEE 261

The following BLAST results are available for this feature:

BLAST of CmaCh06G015620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWG2	4.1e-217	62.52	Protein high chlorophyll fluorescent 107 OS=Arabidopsis thaliana OX=3702 GN=HCF1...	[more]
Q9FNS4	5.2e-71	32.25	PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas reinhardtii OX=...	[more]
Q9HF03	2.2e-13	25.72	Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. grubii serotype A ...	[more]
P0CO11	3.8e-13	24.27	Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotyp...	[more]
P0CO10	3.8e-13	24.27	Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var. neoformans serotyp...	[more]

BLAST of CmaCh06G015620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G17040.2	2.2e-218	63.59	high chlorophyll fluorescent 107	[more]
AT3G17040.1	2.9e-218	62.52	high chlorophyll fluorescent 107	[more]
AT3G51110.1	1.3e-11	24.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G41770.1	4.5e-09	24.02	crooked neck protein, putative / cell cycle protein, putative	[more]
AT5G45990.1	2.7e-06	22.16	crooked neck protein, putative / cell cycle protein, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003107	HAT (Half-A-TPR) repeat	SMART	SM00386	hat_new_1	coord: 186..219 e-value: 74.0 score: 9.0 coord: 255..291 e-value: 68.0 score: 9.3 coord: 221..253 e-value: 16.0 score: 13.8 coord: 395..427 e-value: 34.0 score: 11.5 coord: 429..464 e-value: 64.0 score: 9.5 coord: 361..393 e-value: 990.0 score: 0.8 coord: 152..184 e-value: 90.0 score: 8.4 coord: 466..498 e-value: 16.0 score: 14.0 coord: 293..325 e-value: 1.3 score: 18.0 coord: 327..359 e-value: 66.0 score: 9.4
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 381..414 e-value: 13.0 score: 14.0 coord: 172..205 e-value: 270.0 score: 2.4 coord: 241..274 e-value: 25.0 score: 11.5 coord: 313..346 e-value: 28.0 score: 11.1 coord: 279..312 e-value: 13.0 score: 14.1 coord: 207..240 e-value: 42.0 score: 9.4 coord: 415..448 e-value: 68.0 score: 7.6 coord: 452..485 e-value: 37.0 score: 10.0
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 279..312 score: 8.4374
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 277..514 e-value: 4.5E-34 score: 120.0
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 94..276 e-value: 7.8E-17 score: 63.2
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 110..391
None	No IPR available	PFAM	PF13432	TPR_16	coord: 285..346 e-value: 0.0011 score: 19.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 610..639
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 620..639
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 332..504
IPR044624	Tetratricopeptide-like repeat protein Mbb1-like	PANTHER	PTHR44917	PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107	coord: 45..620

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G015620.1	CmaCh06G015620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0006417	regulation of translation
biological_process	GO:0006396	RNA processing
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003727	single-stranded RNA binding