CmaCh06G013040 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G013040
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	protein NRT1/ PTR FAMILY 5.2-like
Location	Cma_Chr06: 8633732 .. 8634241 (-)
RNA-Seq Expression	CmaCh06G013040
Synteny	CmaCh06G013040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCCGTACAAGAAACTGGCCACGACGGCTACACCAAAGATGGAACCGTCGATCTCCATGCTAATCCAGTCCTCCGCTCCAAGACCGGCTGTTGGAAAGCTTGCTCCTTCATCGTTGGTAACAATTTTCTCTCGTTCTTCTTCTATGTACCTGTTTCTCCGTCATTGAGAGGAGGTCATAAGCGTCTATACGGTTGAATGGGAATTAACTTTTTTGTTGTGGATTAATGACAGTATATGAAGTGTTCGAACGGATGGCGTATCATGGAATATCGACAAATCTAATATTATACTTGACAAGGAAGCTGCATCAAGGCACTGTAGCATCGGCTAATAATGTCACCAATTGGTCTGGAACTGTTTGGATAATGCCCATCTTGGGAGCTTACATTGCGGACGCTCATCTCGGTCGGTATCGGACCTTTATGATCGCCTCGACCATATGTCTAATGGTATGTTCTAATATTTCAGTCATTTCCATCTTTTTATAAATAGAAAACTAAATAG

mRNA sequence

ATGGCGTCCGTACAAGAAACTGGCCACGACGGCTACACCAAAGATGGAACCGTCGATCTCCATGCTAATCCAGTCCTCCGCTCCAAGACCGGCTGTTGGAAAGCTTGCTCCTTCATCGTTGTATATGAAGTGTTCGAACGGATGGCGTATCATGGAATATCGACAAATCTAATATTATACTTGACAAGGAAGCTGCATCAAGGCACTGTAGCATCGGCTAATAATGTCACCAATTGGTCTGGAACTGTTTGGATAATGCCCATCTTGGGAGCTTACATTGCGGACGCTCATCTCGGTCGGTATCGGACCTTTATGATCGCCTCGACCATATGTCTAATGAAAACTAAATAG

Coding sequence (CDS)

ATGGCGTCCGTACAAGAAACTGGCCACGACGGCTACACCAAAGATGGAACCGTCGATCTCCATGCTAATCCAGTCCTCCGCTCCAAGACCGGCTGTTGGAAAGCTTGCTCCTTCATCGTTGTATATGAAGTGTTCGAACGGATGGCGTATCATGGAATATCGACAAATCTAATATTATACTTGACAAGGAAGCTGCATCAAGGCACTGTAGCATCGGCTAATAATGTCACCAATTGGTCTGGAACTGTTTGGATAATGCCCATCTTGGGAGCTTACATTGCGGACGCTCATCTCGGTCGGTATCGGACCTTTATGATCGCCTCGACCATATGTCTAATGAAAACTAAATAG

Protein sequence

MASVQETGHDGYTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLTRKLHQGTVASANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTICLMKTK

Homology

[Close]

BLAST of CmaCh06G013040 vs. ExPASy Swiss-Prot
Match: Q9FNL8 (Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana OX=3702 GN=NPF5.3 PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-41
Identity = 79/111 (71.17%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 3   SVQETGHDGYTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLT 62
           +V+E G D YTKDGTVDL  N V RS+TG WKACSF+VVYEVFERMAY+GIS+NL++Y+T
Sbjct: 2   TVEEVG-DDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMT 61

Query: 63  RKLHQGTVASANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTICLM 114
            KLHQGTV S+NNVTNW GT W+ PILGAY+ADAH GRY TF+I+S I L+
Sbjct: 62  TKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLL 111

[Close]

BLAST of CmaCh06G013040 vs. ExPASy Swiss-Prot
Match: Q9FNL7 (Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana OX=3702 GN=NPF5.2 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.4e-38
Identity = 76/108 (70.37%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 3   SVQETGHDGYTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLT 62
           +V+E G D YTKDGTVDL  NPV RS  G WKACSF+VVYEVFERMAY+GIS+NL +Y+T
Sbjct: 2   TVEEVG-DDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMT 61

Query: 63  RKLHQGTVASANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTI 111
            KLHQGTV S+NNVTNW GT W+ PILGAY+ DA LGRY TF+I+  I
Sbjct: 62  TKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAI 108

[Close]

BLAST of CmaCh06G013040 vs. ExPASy Swiss-Prot
Match: Q8VZR7 (Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana OX=3702 GN=NPF5.1 PE=2 SV=2)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-32
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 12  YTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLTRKLHQGTVA 71
           YT+DGTVDL   PVL SKTG W+ACSF++ YE FERMA++GI++NL+ YLT++LH+ T++
Sbjct: 7   YTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTIS 66

Query: 72  SANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTICLM 114
           S  NV NWSG VWI PI GAYIAD+++GR+ TF  +S I ++
Sbjct: 67  SVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVL 108

[Close]

BLAST of CmaCh06G013040 vs. ExPASy Swiss-Prot
Match: Q9M390 (Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 7.6e-29
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 10  DGYTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLTRKLHQGT 69
           D YT+DGTVD+H NP  + KTG WKAC FI+  E  ER+AY+G+ TNL+ YL  +L+QG 
Sbjct: 5   DVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query: 70  VASANNVTNWSGTVWIMPILGAYIADAHLGRYRT 104
             +ANNVTNWSGT +I P++GA+IADA+LGRY T
Sbjct: 65  ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWT 98

[Close]

BLAST of CmaCh06G013040 vs. ExPASy Swiss-Prot
Match: P46032 (Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-26
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 12  YTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLTRKLHQGTVA 71
           Y +DG+VD + NP L+ KTG WKAC FI+  E  ER+AY+GI+ NLI YLT KLHQG V+
Sbjct: 24  YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83

Query: 72  SANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTI 111
           +A NVT W GT ++ P++GA +ADA+ GRY T    S I
Sbjct: 84  AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGI 122

[Close]

BLAST of CmaCh06G013040 vs. TAIR 10
Match: AT5G46040.1 (Major facilitator superfamily protein )

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-42
Identity = 79/111 (71.17%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 3   SVQETGHDGYTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLT 62
           +V+E G D YTKDGTVDL  N V RS+TG WKACSF+VVYEVFERMAY+GIS+NL++Y+T
Sbjct: 2   TVEEVG-DDYTKDGTVDLRGNRVRRSQTGRWKACSFVVVYEVFERMAYYGISSNLVIYMT 61

Query: 63  RKLHQGTVASANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTICLM 114
            KLHQGTV S+NNVTNW GT W+ PILGAY+ADAH GRY TF+I+S I L+
Sbjct: 62  TKLHQGTVKSSNNVTNWVGTSWLTPILGAYVADAHFGRYITFVISSAIYLL 111

[Close]

BLAST of CmaCh06G013040 vs. TAIR 10
Match: AT5G46050.1 (peptide transporter 3 )

HSP 1 Score: 160.2 bits (404), Expect = 9.8e-40
Identity = 76/108 (70.37%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 3   SVQETGHDGYTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLT 62
           +V+E G D YTKDGTVDL  NPV RS  G WKACSF+VVYEVFERMAY+GIS+NL +Y+T
Sbjct: 2   TVEEVG-DDYTKDGTVDLQGNPVRRSIRGRWKACSFVVVYEVFERMAYYGISSNLFIYMT 61

Query: 63  RKLHQGTVASANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTI 111
            KLHQGTV S+NNVTNW GT W+ PILGAY+ DA LGRY TF+I+  I
Sbjct: 62  TKLHQGTVKSSNNVTNWVGTSWLTPILGAYVGDALLGRYITFVISCAI 108

[Close]

BLAST of CmaCh06G013040 vs. TAIR 10
Match: AT2G40460.1 (Major facilitator superfamily protein )

HSP 1 Score: 140.6 bits (353), Expect = 8.0e-34
Identity = 61/102 (59.80%), Postives = 82/102 (80.39%), Query Frame = 0


Query: 12  YTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLTRKLHQGTVA 71
           YT+DGTVDL   PVL SKTG W+ACSF++ YE FERMA++GI++NL+ YLT++LH+ T++
Sbjct: 7   YTQDGTVDLQGRPVLASKTGRWRACSFLLGYEAFERMAFYGIASNLVNYLTKRLHEDTIS 66

Query: 72  SANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTICLM 114
           S  NV NWSG VWI PI GAYIAD+++GR+ TF  +S I ++
Sbjct: 67  SVRNVNNWSGAVWITPIAGAYIADSYIGRFWTFTASSLIYVL 108

[Close]

BLAST of CmaCh06G013040 vs. TAIR 10
Match: AT3G54140.1 (peptide transporter 1 )

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-30
Identity = 57/94 (60.64%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 10  DGYTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLTRKLHQGT 69
           D YT+DGTVD+H NP  + KTG WKAC FI+  E  ER+AY+G+ TNL+ YL  +L+QG 
Sbjct: 5   DVYTQDGTVDIHKNPANKEKTGNWKACRFILGNECCERLAYYGMGTNLVNYLESRLNQGN 64

Query: 70  VASANNVTNWSGTVWIMPILGAYIADAHLGRYRT 104
             +ANNVTNWSGT +I P++GA+IADA+LGRY T
Sbjct: 65  ATAANNVTNWSGTCYITPLIGAFIADAYLGRYWT 98

[Close]

BLAST of CmaCh06G013040 vs. TAIR 10
Match: AT2G02040.1 (peptide transporter 2 )

HSP 1 Score: 119.4 bits (298), Expect = 1.9e-27
Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 0


Query: 12  YTKDGTVDLHANPVLRSKTGCWKACSFIVVYEVFERMAYHGISTNLILYLTRKLHQGTVA 71
           Y +DG+VD + NP L+ KTG WKAC FI+  E  ER+AY+GI+ NLI YLT KLHQG V+
Sbjct: 24  YAEDGSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVS 83

Query: 72  SANNVTNWSGTVWIMPILGAYIADAHLGRYRTFMIASTI 111
           +A NVT W GT ++ P++GA +ADA+ GRY T    S I
Sbjct: 84  AATNVTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGI 122

The following BLAST results are available for this feature:

BLAST of CmaCh06G013040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNL8	3.0e-41	71.17	Protein NRT1/ PTR FAMILY 5.3 OS=Arabidopsis thaliana OX=3702 GN=NPF5.3 PE=2 SV=1	[more]
Q9FNL7	1.4e-38	70.37	Protein NRT1/ PTR FAMILY 5.2 OS=Arabidopsis thaliana OX=3702 GN=NPF5.2 PE=2 SV=1	[more]
Q8VZR7	1.1e-32	59.80	Protein NRT1/ PTR FAMILY 5.1 OS=Arabidopsis thaliana OX=3702 GN=NPF5.1 PE=2 SV=2	[more]
Q9M390	7.6e-29	60.64	Protein NRT1/ PTR FAMILY 8.1 OS=Arabidopsis thaliana OX=3702 GN=NPF8.1 PE=1 SV=1	[more]
P46032	2.7e-26	55.56	Protein NRT1/ PTR FAMILY 8.3 OS=Arabidopsis thaliana OX=3702 GN=NPF8.3 PE=1 SV=1	[more]

BLAST of CmaCh06G013040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46040.1	2.1e-42	71.17	Major facilitator superfamily protein	[more]
AT5G46050.1	9.8e-40	70.37	peptide transporter 3	[more]
AT2G40460.1	8.0e-34	59.80	Major facilitator superfamily protein	[more]
AT3G54140.1	5.4e-30	60.64	peptide transporter 1	[more]
AT2G02040.1	1.9e-27	55.56	peptide transporter 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036259	MFS transporter superfamily	GENE3D	1.20.1250.20	MFS general substrate transporter like domains	coord: 4..115 e-value: 1.9E-36 score: 127.3
IPR000109	Proton-dependent oligopeptide transporter family	PANTHER	PTHR11654	OLIGOPEPTIDE TRANSPORTER-RELATED	coord: 14..112
None	No IPR available	PANTHER	PTHR11654:SF73	PROTEIN NRT1/ PTR FAMILY 5.2-LIKE	coord: 14..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G013040.1	CmaCh06G013040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0035442	dipeptide transmembrane transport
biological_process	GO:0042939	tripeptide transport
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0071916	dipeptide transmembrane transporter activity
molecular_function	GO:0042937	tripeptide transmembrane transporter activity
molecular_function	GO:0022857	transmembrane transporter activity