CmaCh06G012940 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G012940
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	mitochondrial import receptor subunit TOM9-2-like
Location	Cma_Chr06: 8592675 .. 8593552 (+)
RNA-Seq Expression	CmaCh06G012940
Synteny	CmaCh06G012940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTCAATGCCAAGAAGCGATTGTCGCTCAGCAACAATGACGACGACGACAACGACAACGCGGCCGGTGTCTTTTTCCAGGTTATCGCGCTCCGTGTCCGAGTCCTCGATCTATAGCCAATTCAATGTACGGAAAGGCCGCCTGGATAGCCGGCACTAGATTCCTCATCCTCGTTGTGCCGCTCATCATCGAGATGGATCGCGAACAGCAACTCAATGAACTCGAGTGATTTGCAAAGTTCCGTCGCCGTTGCCGAGATGGTTTCTTCGGTTCTCAATTGTCGAGGTTCGTTTCTCTTATGATAATGATTCTAGGATTGCAGTTCTTTGAAAGTATTTTCCTCTTCGCTTTTCCGTATCTTCTTGGTATGTAAAATTTGGTTGCTGAGAAAATCCGAGAAAATGTTTGAAGTAATTAGAACAGAAGAGATATAGCACGCATTGTGATTGTGTTCAAATTTGCAGAATATTGATCTGATACAAATATAATGAATAGGAAGGTTAAATTAAATCCCCTTTGCATTTCGTAGTTAGGGATTTGTTTGGTTTCAACTTTACCAGATGTCACCACAGGTGCAGCTACCATTTAGAAATCTATGGTATCTATTTACATCTCTAACTACAATCTCCCTCCGCAGCACCCTACTTGCATACTTGAAAACTTGATGACAATCTCTGCATATTCTTAGATTCTTTACAATTCGTAGAGCTTTTCCAGGTGGTGCCGCCCCGACCAGCACCCCATAAGCCAGCGCCAATTTCTCACTGTGATACCAAAGTGCTTCCTTCTTTTCCTTTTCCCCTACTTCATGAAGCATCTCAGCCCAAATTGGGACATACCCAAGCTTTTCTATCTCCCAAATCAAGTTTCTTAG

mRNA sequence

ATGGCGGTCAATGCCAAGAAGCGATTGTCGCTCAGCAACAATGACGACGACGACAACGACAACGCGGCCGGTTATCGCGCTCCGTGTCCGAGTCCTCGATCTATAGCCAATTCAATGTACGGAAAGGCCGCCTGGATAGCCGGCACTAGATTCCTCATCCTCGTTGTGCCGCTCATCATCGAGATGGATCGCGAACAGCAACTCAATGAACTCGAGTGGTGCCGCCCCGACCAGCACCCCATAAGCCAGCGCCAATTTCTCACTGTGATACCAAAGTGCTTCCTTCTTTTCCTTTTCCCCTACTTCATGAAGCATCTCAGCCCAAATTGGGACATACCCAAGCTTTTCTATCTCCCAAATCAAGTTTCTTAG

Coding sequence (CDS)

ATGGCGGTCAATGCCAAGAAGCGATTGTCGCTCAGCAACAATGACGACGACGACAACGACAACGCGGCCGGTTATCGCGCTCCGTGTCCGAGTCCTCGATCTATAGCCAATTCAATGTACGGAAAGGCCGCCTGGATAGCCGGCACTAGATTCCTCATCCTCGTTGTGCCGCTCATCATCGAGATGGATCGCGAACAGCAACTCAATGAACTCGAGTGGTGCCGCCCCGACCAGCACCCCATAAGCCAGCGCCAATTTCTCACTGTGATACCAAAGTGCTTCCTTCTTTTCCTTTTCCCCTACTTCATGAAGCATCTCAGCCCAAATTGGGACATACCCAAGCTTTTCTATCTCCCAAATCAAGTTTCTTAG

Protein sequence

MAVNAKKRLSLSNNDDDDNDNAAGYRAPCPSPRSIANSMYGKAAWIAGTRFLILVVPLIIEMDREQQLNELEWCRPDQHPISQRQFLTVIPKCFLLFLFPYFMKHLSPNWDIPKLFYLPNQVS

Homology

[Close]

BLAST of CmaCh06G012940 vs. ExPASy Swiss-Prot
Match: Q9FNC9 (Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=TOM9-2 PE=1 SV=3)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 41 GKAAWIAGTRFLILVVPLIIEMDREQQLNELE 73
          GKAAWIAGT FLILVVPLIIEMDRE Q+NE+E
Sbjct: 50 GKAAWIAGTTFLILVVPLIIEMDREAQINEIE 81

[Close]

BLAST of CmaCh06G012940 vs. ExPASy Swiss-Prot
Match: O64497 (Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=TOM9-1 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 26/78 (33.33%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 5  AKKRLSLSNNDDDDNDNAAGYRAPCPSPRSIANSMY---------GKAAWIAGTRFLILV 64
          A K++     D       + Y       R+  +++Y         GKAAWIAGT FLIL 
Sbjct: 2  APKKIGAGKGDSSILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILA 61

Query: 65 VPLIIEMDREQQLNELEW 74
          VPLI+E++++ +L E+++
Sbjct: 62 VPLILELEQDHRLGEIDF 79

[Close]

BLAST of CmaCh06G012940 vs. TAIR 10
Match: AT5G43970.1 (translocase of outer membrane 22-V )

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09
Identity = 28/32 (87.50%), Postives = 30/32 (93.75%), Query Frame = 0


Query: 41 GKAAWIAGTRFLILVVPLIIEMDREQQLNELE 73
          GKAAWIAGT FLILVVPLIIEMDRE Q+NE+E
Sbjct: 50 GKAAWIAGTTFLILVVPLIIEMDREAQINEIE 81

[Close]

BLAST of CmaCh06G012940 vs. TAIR 10
Match: AT1G04070.1 (translocase of outer membrane 22-I )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 26/78 (33.33%), Postives = 42/78 (53.85%), Query Frame = 0


Query: 5  AKKRLSLSNNDDDDNDNAAGYRAPCPSPRSIANSMY---------GKAAWIAGTRFLILV 64
          A K++     D       + Y       R+  +++Y         GKAAWIAGT FLIL 
Sbjct: 2  APKKIGAGKGDSSILAKISNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILA 61

Query: 65 VPLIIEMDREQQLNELEW 74
          VPLI+E++++ +L E+++
Sbjct: 62 VPLILELEQDHRLGEIDF 79

The following BLAST results are available for this feature:

BLAST of CmaCh06G012940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNC9	2.7e-08	87.50	Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
O64497	1.8e-04	33.33	Mitochondrial import receptor subunit TOM9-1 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of CmaCh06G012940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43970.1	1.9e-09	87.50	translocase of outer membrane 22-V	[more]
AT1G04070.1	1.3e-05	33.33	translocase of outer membrane 22-I	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR46867:SF6	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2-LIKE	coord: 37..73
IPR017411	Mitochondrial outer membrane translocase complex, subunit Tom22, plant	PANTHER	PTHR46867	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM9-2	coord: 37..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012940.1	CmaCh06G012940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0043227	membrane-bounded organelle