CmaCh06G012890 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh06G012890
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	Nuclear transport factor 2 family protein with RNA binding domain, RRM-RBD-RNP motifs
Location	Cma_Chr06: 8572392 .. 8582822 (-)
RNA-Seq Expression	CmaCh06G012890
Synteny	CmaCh06G012890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTGCCACCAAGCCATGTCCGCTGGACAACTGAGAGACACTTTTCTGTGAGAAAGGGCGCCATCGCCTTCCACTCTCCACCGATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGTCGCCGCCGGAGCCTCCCTTTTCATCACCAAGCGCTGGCTCTCTGATGCTCTCCTTGCAACCCCATCAGCCCTAATGTTTCCCATCTTGTCCGGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATATCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGCGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACGAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATTGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTAGATTGCCTGCAAATGTCACTGATTAGTTTCTACGTTGAATTCTAATTCATGATTTCATTTATATTCATTGGCATTATATGAAAACTTTGCTTCGAAGTCAAGCTCACAAGAGATCTAGTTCATCTTTAGGGTATCGAATCTAGATGTTTTCGAAGAAAATACCTCAAAACTTTGTGGTCATCTTGTTAGGAATCACGAACCTCCACAATGGTATGATATTGTTCACTTTGTGCATTAGCACTCATGGCTTTGCTTTTGGTTTCTCCAAAAGGCCTCATACCAATGGAGATATATCCCTTATAAACTCATAATCAACCCCTTAATTAGCTGACGTGGGACTCCTCTCCCAACAATTCTCCCCTCGAATAAAGTACACCATAGAGCCTCCCTTGAGGCCTATGGAGCCCTCGAACAGCCTCCTCATAATCGAGGCTTGACTCCTTCTTTGGAGGCCTCGAAGAAAGTACATCATTTGTTCGTCACTTTTGACTACACTTTCAAGACTCACAATTTTTTTGTTCGACATTTAAGGATTCTATTGACATGATCAAGTTAAGGGCATGACTTTGATACTATGTTAGGAATCATGAACCTCTACAATGGTATGATATTGTCCAGTTTGAGCATTATCTCTCATGGCTTTGCTTTTGATTTTCCCAAAGGGCCTCATAACAACGGAGAAGTATTCCTTACTTATAAACCCATGAGCGACCCCTTAATTAGCCAATGTGGGACTCCTCTCACAACAATCCTCAACACATCTATCCTAGATCCTACCAACTTATTGAAATGTTGCAGGTTTAGGCAATCGTTTCATACTTTGAGATGCTTGTAATTAGTTCAAATATCCACAGAGAACCCACTGGCTAGGTTTGATATTGAAGTGGCAACTATATGTTGATCCAATGTGCTATTCCTTTTTTAACCAAATTGTTGAAGCAGTATGAGACCTACAATGGTGGGTTTCATGGAATGAAAGCATTGTAGCAGGGTATGATTCTGTTACTAAAGTGCCACAGTGCCAAGATGATATCCAATATATTATTTATTTGAAGAATTGGTCCTTTGTTTGTACAACTTTGTGGGGTTGTATGCTTAAATAGCTGCTAACCTTCATTTACCTTCCTTATTACTCAAATTCGAGCTCAAAACATTTACCATAATTTACCACCGTGGATTAATCTAGTGGTCATAAGGAACCGAAGAAAAAGTGAATGGAGAAGGAATGGATTTGAATCAAACAGCCCAAGCCCACCGCTAGCAGATATCGTCCATTTTAGGCTTTTTCTTCCGGACTTCCCTTCAAAGTTTTTTAAAACGCATCTGCTAGGGAGAGGTTTTCACACCCTTATAAAGAATGTTTTGTTCTCCTCCCCAATTGAGATCTCACAGGACACCCCCTTTGGGGCTTAGCATTCTCGCCGACACTCATTCCCTTCTCCAATCGATATGGGACCCCCCAATCCACCCCCTTCGGGGCCCAGCGTCCTTGCTAGCATACCGCCTCGTGTCCATCCCCTTCGGGGCTCCGCCTCCTTGTAGACACATCGCTCGATGTCTGGCTCTGTTACCAACTATAATAGCCCAAGCCCACCGCTAACAAATATTATTCTCTTCAGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTTTTAAAACACATCTGCTAGGGAGAGATTTCCACACCCTTATAAAGAATGTTTCGTTCTCCTCCCGAACCGATGTGGGATTTCACATGATCCTCCTAAAATTGAACATACAAGTTTTCTAAATGACCAAATGCACAAGGCTAGGCTATCTTTTTGTGAGATTAGTTGCAACGTGCATAAGCTAATTTGGACGCTCACGATACTTTTTTAAAGAAAACCCCATTGAACTTTACGAAAGTTCCAATGTTCAGGTCTACATTTGTCCTTAAAACAGAATTCTCAACAGTCTGCATTCATTCTCTACTTTAAACTAAATAGTCAAGAGCATATTTTCATATTAAATCCCTCGTTCCTGAGGAGTCACTAATCAATTCATACGGTATAAGGTTCTTTATGACAGGAGTACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGTGAGAATTTTTCTCTCTTACTTTCATTTTTTCCTCTATGTTGCTATATCTATCCTGATATAATTGGAACTATTGGACTCTGATGCTAAATACGAGTATCACTTATATTCAGGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGGACTTCTTTATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGTTTGTAATGAATTGGTACGAATCTTTCTTAGTTCTTATGTATCTTTCTGTTCACATTGTTATTATATCACTTCCTTTCGTGTAGCTCAATTGTGTCTGTTTTTTCGAGTTCTTAGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTAAAGGAAAACAAGCTCAGGGGTAAATATCAGCATACAATGACTAAACAAGAAACAGGAAAGAATTTCTACCTAGCTGTTACTGAACGAACCGCACGTGACTGACTGTATCTTCTCTCTTTTTCGTATACATCCTGTCTCCCACTTCAATACGTTACGAGCGAATCTCAATGGGAATAGTATGTTCGGTTTCCAGCTATCATTGTAGAGATATCATGTGAATCCTGATTCAAACTGATGATCATCAGACAAGATTTAAAAAATGGTTGTAGCAATGAATAAGAAGGAAATAGGAATGAATTTCTACCTTGCTGTAGCTGGTTGAACTCTGCAAGCAATTGAAGTTTCTTTCTCATCTGTTGCTGTATGTATTTCATTTACTCATATCTCAATCCTATACTTCACAATTGAAACTATTAGTGAGAATGTCATTTGATGGCCTCTTAATGAAGTGGGAGACCTATAGCAGGGACTAAGGAGTGATCCTTGAAACAGATAAACTCCATACTAGAAGAAAATGGAAGTCTGTCACCAGTCACCTGAGGCGGGTGTAAAAGCTCCAAGTCCACCGCTAGTAGATATTATCTGCTTTGACTTGTTATATATCGTGGTTAGCCTCACGATTTTAAAACGTTTGTTAAGGAGAGGTTTTTATATCCTTATAAGGAATGTTTCGTTCTTCTCTCTTGCCGATATGTGATCTCACAATCTACCCTCCTTGGGGTCCTAACGTTCCTGCTGTTACACTGCTAGCAAATATTGTCCATTTTAACCCAAAAGAATTGCTAGATCTTGAGTAGAGTTTGATGTTCTTACCTATAGCAATCTCAATGAACAATAAGAAACACCATATTAATGAACCTGATCACCAAGAACCCACAAAATACACTCAAAGCTGAAAAACAAAACCAGCCCACGTACTAAAAACTCAAAAACTTATCTTTGAGGACTTTCTTCAAACACTTGGTGTGCACCCCACTAAACAAACCTAATCCTCCAGTGATTTCTTAGCTCATTAAGGGAGAAAAGAAAAGGTTTGACTGTAGGGCAGTGGGCAGGCAGTGATGAGCGCAAGAAATGCAAACTCAGGCAGTATTGTGCTGCACCATGTTTCCCAAAACTGAAAAAAAAGCGACCGAGAGACACAAAAAGATATTCAAACCGAGATTTTTTTCACTAAAATCTTATCAGGTTCAAAAAAATTAATCATATTTAACTCCTACCATTTGGGTTGGGTTGATCGGGTTCAATGTATACCCCTATGAAATTGGTCAGGTCTTCTATTCGTTTTAAAAGTGCCAAATACCAATGGTTAATGATGATAGGAAAAAAATTAAAAGGTTAATAAAAAAAGGTTGGTTTAATTCATTGACTTCATATGTTTCAGAAATGGAAACAAAAGAACATAGAAATAGACATTTTGGAAAAAGAAAAAAAAAAAAGCATTTTGATTTTCCCACCCCTTTCCTTTTCATTTCATTTATTTATTTATTTATTTTCAAAAGTTTTTTCCATTTGATTTAATTACCCAATTGATTGAAAATTAATAGAATCCAAAGAAATATGGACCCAATGATCTGATGATGCAATCTCTAAGAACGGCTGAGCTTTCAGAGAAACGCAAACACCTCGAAACCCAAATAATCATAAGAAAAATAAACAAAAATCAGTGGCGGAGAAGAAGAATATTCCCTGTGAATTTATCCCGAGCTCTCTCTCGCCCGCTGTATCGCTTAAACCCTTGCGTTCTTTCGCTCTCTGCTGCTCTCTTTCTCTGTATATCTCTCTAAATCTCTGTATTTTTTCATGTGTTTTTGAATTTATCTGTGATGGTTTCGATAGATGAAAATGAATCTGAAATGGGTTTTGTTTTTGTAGATCTAAGATTTTGATTGTGGGACTTGTTCTTGTTTCTTCTCGATTTTTAGGGTTTAAGGGTTTCGATCAAATGGGGACGCCCTTTCACATTCCGGTCACTGCCGCTCAGGTTTTGTTTATTTCCTTCTTTGTTCTTCTGTTTGGGCATTTGGGGGTTGTTTCCTTGCAGAAATTTGATGTGGGGTTTGGCTGGTTTAGGTGGGAACGTACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTTTGTTCATCAGTTTTATTCTGATGCGAGTACCATGCTTCGTGTTGATGGCCATTTCAGGGAGTCCGCCACTGCAATGCTGGTATTTTTCCTTTTTCCTTTTGGTTCATTGTTCTTAACTGAAGTTTTTGAATTCTGTGCACAATGTGAGCGTTACATTTTGTGAGTGCATAATGTGTTTGTGTGTGGGCTTGTTTTGATTTTTCATATTGGTGTTCTTTCTCTCAATAAAGGAATGTAAGTGTTCTTTCATTTTTCCGGTATTTTAGGATGAATTCGACTGTGATTGAACTATGTTACGGTCTCTTTTCTTGTTCGTTATTCTTTCATGGGTAAATTCAGTTATTGTTCGTTGTTCTTTCACTATAAACTAGGTTAATGTGTCTCTTGGTCCTTTCTCCTTCACTGCTGCAAAGTAAAGACTTAGAAAGATTAATGATAGTTTACGAACTTCACTCGTTCACCTAAACCTAATTGAACCTATTTATTCTTGAATTGTAAACTCGGTCTCATTGCTATTTGACTCGGCTGTAAAGGTTCTTTCTCCTATACTCCTCGTGTTCTTCCCTTCCTTTAGATTCATTTCACTGGAAACAAGATTCATTCGACTCAACCTTAAACCTTTTCCTTCAAACACTTGGTAAACACCAGCTTATGTTTTTTTGTACGCCATGTAGTGGTTGATGACTTATTTTTCATTGTGTTAGACAATACATAATTTAGTAGATTCATTTCATGGCATATTTCTTCTTATGATTCATATAGTTTGTGTTTGCTGTTTAATCTGCAGCAAATCCATGCTCTTGTGATGTCGCTTAGTTATACCGGGGTTGAGATCAAGACAGCACATTCATTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTTCAAATGAAGAATTTCAATCAAATGAGAAAATTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTGCACCATTATCCAGCACTCTTATTAAGTCAGAGCAATCTTGATTCCACCTTGAATGCTCCAACCACAGCTCCAGAGACAGGTTTGATTTATTAATCACATGGGGGAGCTAATTTGTTTGCTTCTCTTGATGTATTGGATTCTAGAACACAACCTTTGAGTAATCATCATTAAAACTTGTAACGACCTAAGCCCACCGTTAGCAGATATTGTCCTCTTTGTGCTTTCCCTTTCGGGCTTCCTCTCAAGGTTTTTAAAACGCGTCTGCTAGGAGAGGTTTCCACATCCTTATAGAGGTGTTTCGTTCTCCTCCCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCCTAGCATCCTCGCTAGCACTCGTTCCTTTCTCCAATCGATGTGGGACCCCCACCGAATCCACCCTCCTTCGGGGCCAATCGTCCTTGCTGGCACATCACCTCATGTCTATCCCCCTTTGGAGAACAACCTCCTCGTTGGCACATCACCTAGTGTCTGGCTCTGATACCATTTGTAATGGCCTAAACTCACCTCTAGCAGATATTGTCTTCATTGGGCTTTCCCTTTCGGGCTTCCCCTCAAGGTTCTTAAAACACGTCTGCTAGGGAGAGGTTTCCACACCCTTATAGAGGATGTTTCCTTCTCCTCTCCAACCGATGTGGGATCTCACAATCCACCCCCCTTCAGGGCTTAGTGTCCTCACAAGCACTCGTTCCTTTCTCCAATCGATGTGGGAACCCCACCAAATCCACCCCCCTTCGGAGCCCAGCGTCCTTGTTGGCACATCACCTCGTGTCTACACCCCTTTGAGGAACAGCTTCCTTGCTGGCACATCACCCAGTGTTTGGCTCTGTTACCATTTGTAACGGCCTAAGCTCACCGCTAGCAGATATTGTCCTCTTTGGGAACCTTTCAGGCTTCCTCTCAAGGTTTTTAAAACGTGTCTGCTAAGGAGAGGTTTTCACCACTCTTATAAAGTGTGCTTCGTTCTCCTCCCCAACCGATGTGGGATTTCACAAAACTATTTTGTTGTTCATACTATTGAGGTGTTCTGTTAAATTTTCTTTGATTAAACTTGGTTCTTTGGATTATCTTTTGATTTCCCTTTTTGGTTCTGGCTTGGAGTCTCCCATGGAGTCGATTTGATACCGAGTTTTTTCTGAATGAAGTTAAATTCTTGTTGTAGTGCCCAATTACTCACTGAATGGTGCAGTCCAGGCCCCGCGAGAGTTTGCAACCCCGGTTGTCAAAGAAAATGGTCACGTCGATAACTGTAAGTTTGTCGAGCAGCAACTGCAGCAAGTTCCCGAGCCAAAAAGCATTATAGAGGAAAGTACAGCAGACGTAAATTCTATCCATCAGAATGCACCAACTGTTTCACCAGATCCTTCCCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCAAACATATGCTTCAATCGTAAGCTTTGACATTAACAATCAATTCACCAAAGATTTAAACATATGCAGCATTTGATGGAACTGACTTCATTTATTCTAATTTCTTTAGCTTCGAGTTGCTAAAGGACAAGATGCGCCCGCTTCCATTGCTGCTTCTCAGTATCCAGTTAGTAAGAGCACACCATCTGCTTCAGAGAAAAACTACACTCCACCGTCCACTGCCCAGCAATTAACTACAGCTCTCCAAAATAACTCCGAACGGGAACAGACAGGAGGCGAGTTCCCTTCTGTTGATGATGAAGGTTAGCAATGTCGTATTGATCATTATTCGGGTCTTTAGCTATTTCTATGTGAATTATAATCATTTTTAACCTCTATGTATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCACTTTGGAAAACTCAGTTCTGATGGGGTGGTTATTAGGAGCCGCAAGGTCTACATTCTTTTTTTTTTTTTTTTTATCTTTCAGTGTATTTCACGATGCCTGTCTTGAATTACTCGATGCCTGACTAACTCGTGATTTCCAGGATGTTGGTTTTTGCTATGCATTTGTCGAATTTGAAGACGTCACTGGCGTCCAAAACGCTATCAAGGTTGGTTTGCTTCACTTGAAATCCTTGGAACTTAGTGTTTTCTTATTCTTTCTTTTTAGATTGAACTTTTACTTTTTGCTTTAAAAACATTTTGGGTTTCAATCTTTCATCCCCCTCCTACACCAATTTTGTTTTAGAAGGATAGTGCCCAAAAACGTTGTAACAGCCCAAGCTCACCGCTGGTAGACATTGTCCTTTTTGGGCTTTCCCTTCCAGACTTCCCCTCAAGGTTTTAAAACGCGTCTGTTAAGAAGATGTTTTCACACCCTTATAAAGAATGTATCATTCCCCTCTCCAACTAATGTGGGATCTCACAATTCACCCCCTTGGGGGATAGCGTCCTCGCTGACACACTACCGGGTGTCTGACTCTAATACCATTTGTAACAACTCAAGCCCACAATAGATATTGTCCTCTTTGGGTTTTCCATTCTAGGCTTCTCTTCAAGGTTTTAAAATGCATCTGTTAAGGAGAAGTTTCCATACCCTTATAAAAAATGTTTTGCTCCCCTTTCCAACCAACATGGGATCTCACGAACATCTATCCATAATTTTTTGAACTAAAAACTTGCCTGATCAACCCTTACCTTATTAGATTTCTTTTTGATAACCCACCTCATAGATTCTGATTAGCAGTTCTTTTTTCCTCTTTCCAGGCAGGTACTGCTCAGGTTGCTGCCACCTCATAGATTCTGATTAGCAGTTCTTTTTTCCTCTTTCCAGGCAGGTACTGCTCAGGTTGCTGGGCGTCAAGTATACATCGAGGAGCGGAGAGCGAACAGCAACGTCCCACACCAAGGAGGAAGTATGCATTCTTTCACAATGTATCTCTTTAGAATTTTGATGTTGATAGTCATATCTTCCAATTCAAAGTACATGCATCTACCCTGATATGATAGACCATTTGATGGCTTTGCTGATAGCTTTATAACAACCCAAACCCACAGCTGCTTTGATCTGTTATGTATGGCCATCAGCCTGACTATTTTAAAATGCATCTGTTAGGGAAAGGTTTCCCACACCCTTATAAGGGATGCTTCGTTCCCCTCTTCATTTATCGGGACATCACAATCCACCCCCTTGGGGGCCTAACGTCTTCGCTGGCACCTCATCTAGTGTTTGGCTTTGATACCATTTGTAACAGCCACTTAAAACACAGTGGGCTTAGGCAGATGTGGATTGTGAGGATCCACATCGATTGGAGAGGGAAACGAAACATATTCTTATAAGGGTGTGGAAACTTCTCCCTAACATATGCGTTTTAAAACTGCGAGGCTAACGGTGACATGTAATGGGCCAAAGCGGACAATATCTACTAGCAGTAAGCTTGAGCTGTTATATGTTTTGTCCATCTGCTACTTACGAACCAACGTGTGGAACGACATATTCAGCTTTAGTTTTGAATTCCTTATTTGAACTGGCTTTCATTCCTTGGCTACACTATTGAATTATGAGCAGGAAGGGGTGGTAGAGGAAGAGGTAGCTATCACACAGAGTCTTCTAGGGGGCATCATTCTAGCTCTTGGAGTTACAATATGGGAGTTCGAGACGGAAGCGACCGTGAGTATATCAGACCGAGAGGCAACGGCTTCTATCGACCTACTACTCGACAGGACAAAGTGAACCACAGCCATCAAGTATCAAGAAATGGAGAAAGTCCATCAGAGTCATCATAGCTCGTTTAGCAAAGCAACAGTTTTGGTTCTAGCATTATCAACAGAGGCACACTCACATTACCACATTGAAGAATAATTTGAGTCAGTTTAAGCTAATATTATTTGTCTAAGCGAATATGAATTGCATCATTATTTTTTCCATTGGGTTTCTTGATTTAAACAACATTTCATGAAACTCACTGCATTTCCTCGTTGTTTTAAATATAATCAAATTTTGTCTCTACCTCTCGTGTTCATACTCGTTATTATATGATATTTGAATCGAAAAGTTTAAATTTTCATACCTCATTTCTTATACTAAAATAGCCTATGTTGTGTTCATAACCGTCGTCTC

mRNA sequence

ATTTGCCACCAAGCCATGTCCGCTGGACAACTGAGAGACACTTTTCTGTGAGAAAGGGCGCCATCGCCTTCCACTCTCCACCGATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGTCGCCGCCGGAGCCTCCCTTTTCATCACCAAGCGCTGGCTCTCTGATGCTCTCCTTGCAACCCCATCAGCCCTAATGTTTCCCATCTTGTCCGGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATATCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGCGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACGAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATTGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTTCTTTATGACAGGAGTACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGGACTTCTTTATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGTTTGTAATGAATTGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTAAAGGAAAACAAGCTCAGGGATCTAAGATTTTGATTGTGGGACTTGTTCTTGTTTCTTCTCGATTTTTAGGGTTTAAGGGTTTCGATCAAATGGGGACGCCCTTTCACATTCCGGTCACTGCCGCTCAGGTGGGAACGTACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTTTGTTCATCAGTTTTATTCTGATGCGAGTACCATGCTTCGTGTTGATGGCCATTTCAGGGAGTCCGCCACTGCAATGCTGCAAATCCATGCTCTTGTGATGTCGCTTAGTTATACCGGGGTTGAGATCAAGACAGCACATTCATTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTTCAAATGAAGAATTTCAATCAAATGAGAAAATTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTGCACCATTATCCAGCACTCTTATTAAGTCAGAGCAATCTTGATTCCACCTTGAATGCTCCAACCACAGCTCCAGAGACAGTGCCCAATTACTCACTGAATGGTGCAGTCCAGGCCCCGCGAGAGTTTGCAACCCCGGTTGTCAAAGAAAATGGTCACGTCGATAACTGTAAGTTTGTCGAGCAGCAACTGCAGCAAGTTCCCGAGCCAAAAAGCATTATAGAGGAAAGTACAGCAGACGTAAATTCTATCCATCAGAATGCACCAACTGTTTCACCAGATCCTTCCCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCAAACATATGCTTCAATCCTTCGAGTTGCTAAAGGACAAGATGCGCCCGCTTCCATTGCTGCTTCTCAGTATCCAGTTAGTAAGAGCACACCATCTGCTTCAGAGAAAAACTACACTCCACCGTCCACTGCCCAGCAATTAACTACAGCTCTCCAAAATAACTCCGAACGGGAACAGACAGGAGGCGAGTTCCCTTCTGTTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCACTTTGGAAAACTCAGTTCTGATGGGGTGGTTATTAGGAGCCGCAAGGATGTTGGTTTTTGCTATGCATTTGTCGAATTTGAAGACGTCACTGGCGTCCAAAACGCTATCAAGGCAGGTACTGCTCAGGTTGCTGGGCGTCAAGTATACATCGAGGAGCGGAGAGCGAACAGCAACGTCCCACACCAAGGAGGAAGAAGGGGTGGTAGAGGAAGAGGTAGCTATCACACAGAGTCTTCTAGGGGGCATCATTCTAGCTCTTGGAGTTACAATATGGGAGTTCGAGACGGAAGCGACCGTGAGTATATCAGACCGAGAGGCAACGGCTTCTATCGACCTACTACTCGACAGGACAAAGTGAACCACAGCCATCAAGTATCAAGAAATGGAGAAAGTCCATCAGAGTCATCATAGCTCGTTTAGCAAAGCAACAGTTTTGGTTCTAGCATTATCAACAGAGGCACACTCACATTACCACATTGAAGAATAATTTGAGTCAGTTTAAGCTAATATTATTTGTCTAAGCGAATATGAATTGCATCATTATTTTTTCCATTGGGTTTCTTGATTTAAACAACATTTCATGAAACTCACTGCATTTCCTCGTTGTTTTAAATATAATCAAATTTTGTCTCTACCTCTCGTGTTCATACTCGTTATTATATGATATTTGAATCGAAAAGTTTAAATTTTCATACCTCATTTCTTATACTAAAATAGCCTATGTTGTGTTCATAACCGTCGTCTC

Coding sequence (CDS)

ATGCTACCCATCTCCTCCCTATCAAATTCTCCCACCATGGCCACCGTCGCCGCCGGAGCCTCCCTTTTCATCACCAAGCGCTGGCTCTCTGATGCTCTCCTTGCAACCCCATCAGCCCTAATGTTTCCCATCTTGTCCGGCTCTCTTGCCATTGAATCGGCCCCGCTTAGAGCTTTCTCGGAGAGGTGGCGGCCGGCTCTGGGAATATCCGCCGCCGTTGTGCAGAGAAAGGCGGCTGTGACATTTGGGGTTGAAGAGGGTGTGGCGGATGAGACGGCGGAGGAGGGAGAAGGGCAAGCGGTGGACGGTGGTTCTCCAGTGGAATCCGGGAAAACGAAGCTGTATTTTGGGAATTTGCCTTACAGTGTTGATAGTTCACAGCTTGCTGACATTGTTCAGGATTATGGGGTCGCCGAGCTCATTGAGGTTCTTTATGACAGGAGTACTGGAAAAAGTAGAGGATTCGCATTTGTAACCATGAGCAGCATTGAAGATTGCAATAAAGTCATCGAAAATCTGGATGGAACTGCTTACATGGGCAGACTATTGAGGGTTAATTTCTCAGACAAACCTAAGCCTAAGGGACTTCTTTATCCAGATTCTGAGTATGAACTTTATGTCAGTAACTTATCCTGGTCAGTAACATCTGAAAGTTTGGCACAAGCATTTCAAGAATATGGAAATGTGGTCGGAGCAAGGGTCATCTACGATGACGAGACCGGAAAGTCACGTGGATATGGCTTTGTATCTTATTCAACAAAATCAGAGATGGAAACAGCTCTTGAAGTTTGTAATGAATTGGAACTTGAAGGCAGGGTAATACGTGTTAGCTTAGCTAAAGGAAAACAAGCTCAGGGATCTAAGATTTTGATTGTGGGACTTGTTCTTGTTTCTTCTCGATTTTTAGGGTTTAAGGGTTTCGATCAAATGGGGACGCCCTTTCACATTCCGGTCACTGCCGCTCAGGTGGGAACGTACTTTGTTGGGCAGTACTATCAGGTTCTTCAGCAGCAACCTGACTTTGTTCATCAGTTTTATTCTGATGCGAGTACCATGCTTCGTGTTGATGGCCATTTCAGGGAGTCCGCCACTGCAATGCTGCAAATCCATGCTCTTGTGATGTCGCTTAGTTATACCGGGGTTGAGATCAAGACAGCACATTCATTAGAATCATGGAATGGTGGTGTTCTTGTGATGGTTTCTGGATCTGTTCAAATGAAGAATTTCAATCAAATGAGAAAATTTGTGCAAACTTTTTTTCTTGCACCCCAAGAGAAAGGCTATTTTGTTCTGAATGATATCTTTCACTTTGTTGATGAGGAGCCAGTGCACCATTATCCAGCACTCTTATTAAGTCAGAGCAATCTTGATTCCACCTTGAATGCTCCAACCACAGCTCCAGAGACAGTGCCCAATTACTCACTGAATGGTGCAGTCCAGGCCCCGCGAGAGTTTGCAACCCCGGTTGTCAAAGAAAATGGTCACGTCGATAACTGTAAGTTTGTCGAGCAGCAACTGCAGCAAGTTCCCGAGCCAAAAAGCATTATAGAGGAAAGTACAGCAGACGTAAATTCTATCCATCAGAATGCACCAACTGTTTCACCAGATCCTTCCCCTGTTTCTGTTGAAGAACATGCTGAGGAGCCCCAAAAGCAAACATATGCTTCAATCCTTCGAGTTGCTAAAGGACAAGATGCGCCCGCTTCCATTGCTGCTTCTCAGTATCCAGTTAGTAAGAGCACACCATCTGCTTCAGAGAAAAACTACACTCCACCGTCCACTGCCCAGCAATTAACTACAGCTCTCCAAAATAACTCCGAACGGGAACAGACAGGAGGCGAGTTCCCTTCTGTTGATGATGAAGGTGAAATAAAGTCTGTTTATGTAAGAAACTTGCCATCCACTGTGTCTGCTTCAGAAGTTGAGGAGGAATTCAAGCACTTTGGAAAACTCAGTTCTGATGGGGTGGTTATTAGGAGCCGCAAGGATGTTGGTTTTTGCTATGCATTTGTCGAATTTGAAGACGTCACTGGCGTCCAAAACGCTATCAAGGCAGGTACTGCTCAGGTTGCTGGGCGTCAAGTATACATCGAGGAGCGGAGAGCGAACAGCAACGTCCCACACCAAGGAGGAAGAAGGGGTGGTAGAGGAAGAGGTAGCTATCACACAGAGTCTTCTAGGGGGCATCATTCTAGCTCTTGGAGTTACAATATGGGAGTTCGAGACGGAAGCGACCGTGAGTATATCAGACCGAGAGGCAACGGCTTCTATCGACCTACTACTCGACAGGACAAAGTGAACCACAGCCATCAAGTATCAAGAAATGGAGAAAGTCCATCAGAGTCATCATAG

Protein sequence

MLPISSLSNSPTMATVAAGASLFITKRWLSDALLATPSALMFPILSGSLAIESAPLRAFSERWRPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEVCNELELEGRVIRVSLAKGKQAQGSKILIVGLVLVSSRFLGFKGFDQMGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRVDGHFRESATAMLQIHALVMSLSYTGVEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYFVLNDIFHFVDEEPVHHYPALLLSQSNLDSTLNAPTTAPETVPNYSLNGAVQAPREFATPVVKENGHVDNCKFVEQQLQQVPEPKSIIEESTADVNSIHQNAPTVSPDPSPVSVEEHAEEPQKQTYASILRVAKGQDAPASIAASQYPVSKSTPSASEKNYTPPSTAQQLTTALQNNSEREQTGGEFPSVDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFCYAFVEFEDVTGVQNAIKAGTAQVAGRQVYIEERRANSNVPHQGGRRGGRGRGSYHTESSRGHHSSSWSYNMGVRDGSDREYIRPRGNGFYRPTTRQDKVNHSHQVSRNGESPSESS

Homology

[Close]

BLAST of CmaCh06G012890 vs. ExPASy Swiss-Prot
Match: Q9FME2 (Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 6.7e-44
Identity = 147/424 (34.67%), Postives = 210/424 (49.53%), Query Frame = 0


Query: 320 AAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRVD-GHFRESATAMLQIHALVMSLSY 379
           A  VG  FV QYY +L Q P  VH+FY D+S + R D      + T M  I+  ++SL Y
Sbjct: 12  AEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKY 71

Query: 380 TG--VEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYFVLNDIFH 439
                EI+TA + ES   GV+V+V+G +   N N  +KF Q+FFLAPQ+KGYFVLND+F 
Sbjct: 72  EDYTAEIETADAQESHERGVIVLVTGRL-TGNDNVRKKFSQSFFLAPQDKGYFVLNDVFR 131

Query: 440 FVDEEPVHHYPALLLSQSNLDSTLNAPTTAPETVPNYSLNGAVQAPREFATPVVKENGHV 499
           F++E+ V                    T    +VP       VQAP E    VV     V
Sbjct: 132 FLEEKEV--------------------TAQARSVPINGTTRDVQAPIEPERVVVSHEPEV 191

Query: 500 DNCKFVEQQLQQVPEPKSIIEESTADVNSIHQNAPTVSPDPSPVSVEEHAEEPQKQTYAS 559
           +            PEP + IEE   D++++ +       D   V   E  E P + ++  
Sbjct: 192 E------------PEPVASIEEE--DLDNVAEVYDPSDKDEGVVVDVEPIEPPTQISHNE 251

Query: 560 ILRVAKGQDAPASIAASQYPVSKSTPSAS---EKNYTPPSTAQQLTT------ALQNNSE 619
           IL V +G DAP    AS     KS+P+ +    +N   P+   Q  T      A +  + 
Sbjct: 252 ILSVPQG-DAPKHSYASILKQMKSSPAPTTHVARNKPRPAPVNQKLTAPPAEPAARPEAS 311

Query: 620 REQTGGEFPSVDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFC 679
             +       VD E +  S+YVRNLP   + +++EE FK+FG +  +G+ +RS K  GFC
Sbjct: 312 AHENVPNSSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFC 371

Query: 680 YAFVEFEDVTGVQNAIKAGTAQVAGRQVYIEERRANSNVPHQGGRRGGR---GRGSYHTE 729
           + FVEFE  +G Q+A++A    +  RQ  +EE++ NS      G   GR   GRGS+  E
Sbjct: 372 FGFVEFETSSGKQSALEASPVTIGDRQAVVEEKKTNSRGGGNNGGSRGRYFSGRGSFRNE 399

[Close]

BLAST of CmaCh06G012890 vs. ExPASy Swiss-Prot
Match: P19684 (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 3.2e-38
Identity = 85/210 (40.48%), Postives = 134/210 (63.81%), Query Frame = 0


Query: 85  EEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVL 144
           EE   +E  E  E ++V+GG        +LY GNLP+S+ SSQL++I  + G    +E++
Sbjct: 95  EEEEIEEKEERVESESVEGG--------RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIV 154

Query: 145 YDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPK--PKGLL----- 204
           YDR T +SRGFAFVTM S+E+  + I   DG+   GR ++VNF + P+   + ++     
Sbjct: 155 YDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIR 214

Query: 205 -----YPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYS 264
                + DS ++LYV+NLSW++TS+ L  AF +    + A+VIYD  +G+SRG+GF+++S
Sbjct: 215 STYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFS 274

Query: 265 TKSEMETALEVCNELELEGRVIRVSLAKGK 283
           +   M +AL+  NE+ELEGR +R+++A  K
Sbjct: 275 SAEAMNSALDTMNEVELEGRPLRLNVAGQK 296

[Close]

BLAST of CmaCh06G012890 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.0e-36
Identity = 94/210 (44.76%), Postives = 130/210 (61.90%), Query Frame = 0


Query: 77  KAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSVDSSQLADIVQDYG 136
           + AV++G E  V+DE   EG GQ      P E  + KL+ GNLPY VDS +LA I    G
Sbjct: 25  EGAVSWGSETQVSDEGGVEG-GQGF--SEPPE--EAKLFVGNLPYDVDSEKLAGIFDAAG 84

Query: 137 VAELIEVLYDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPKPKGL 196
           V E+ EV+Y+R T +SRGF FVTMS++E+  K +E L+G    GR L VN   K  P+G 
Sbjct: 85  VVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN---KAAPRGS 144

Query: 197 --LYPDSEYE----LYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVS 256
               P  ++E    +YV NL W V +  L Q F E+G VV ARV+ D ETG+SRG+GFV+
Sbjct: 145 PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVT 204

Query: 257 YSTKSEMETALEVCNELELEGRVIRVSLAK 281
            S++SE+  A+   +   L+GR +RV++A+
Sbjct: 205 MSSESEVNDAIAALDGQTLDGRAVRVNVAE 226

[Close]

BLAST of CmaCh06G012890 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.7e-36
Identity = 83/212 (39.15%), Postives = 125/212 (58.96%), Query Frame = 0


Query: 85  EEGVADETAEEGEGQAVDGGSPVESGK-----TKLYFGNLPYSVDSSQLADIVQDYGVAE 144
           EEG  +   + GE   V+     E  +      KL+ GNLPY VDS  LA + +  GV E
Sbjct: 104 EEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVE 163

Query: 145 LIEVLYDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLLRVNFS----DKPKPKG 204
           + EV+Y+R T +SRGF FVTMS++E+  K +E  +     GRLL VN +    ++P+   
Sbjct: 164 IAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPP 223

Query: 205 LLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKS 264
             +  S Y +YV N+ W +    L Q F E+G VV ARV+YD ETG+SRG+GFV+ ++++
Sbjct: 224 RTFEQS-YRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEA 283

Query: 265 EMETALEVCNELELEGRVIRVSLAKGKQAQGS 288
           EM  A+   +   L+GR IRV++A+ +  + +
Sbjct: 284 EMSDAIANLDGQSLDGRTIRVNVAEDRSRRNT 314

[Close]

BLAST of CmaCh06G012890 vs. ExPASy Swiss-Prot
Match: Q08935 (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.1e-34
Identity = 81/196 (41.33%), Postives = 117/196 (59.69%), Query Frame = 0


Query: 102 DGGSPVE-----SGKTKLYFGNLPYSVDSSQLADIVQDYGVAELIEVLYDRSTGKSRGFA 161
           DG   VE     S   K++ GNLP+S DS+ LA++ +  G  E++EV+YD+ TG+SRGF 
Sbjct: 72  DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131

Query: 162 FVTMSSIEDCNKVIENLDGTAYMGRLLRVNFSDKPK----------PKGLLYPDSEYELY 221
           FVTMSS E+     +  +G    GR LRVN    P+           +G    DS   +Y
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVY 191

Query: 222 VSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGKSRGYGFVSYSTKSEMETALEVCNE 281
           V NL+W V  ++L   F E G VV A+V+YD ++G+SRG+GFV+YS+  E+  A+E  + 
Sbjct: 192 VGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDG 251

Query: 282 LELEGRVIRVSLAKGK 283
           ++L GR IRVS A+ +
Sbjct: 252 VDLNGRAIRVSPAEAR 267

[Close]

BLAST of CmaCh06G012890 vs. TAIR 10
Match: AT5G43960.1 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain )

HSP 1 Score: 337.0 bits (863), Expect = 4.0e-92
Identity = 218/459 (47.49%), Postives = 284/459 (61.87%), Query Frame = 0


Query: 310 MGTPFHIPVTAAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRVDGHFRESATAMLQI 369
           M TP+     A QVG+YFVGQYYQVLQQQPD +HQFYS+ S  +R+DG   E+A ++L I
Sbjct: 1   MATPY---PGATQVGSYFVGQYYQVLQQQPDLIHQFYSEPSRAIRIDGDSTETANSLLHI 60

Query: 370 HALVMSLSYTGVEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYF 429
           H +VMSL++T +E+KT +S+ESW GGVLV+VSGSV+ K F+  R FVQTFFLAPQEKGYF
Sbjct: 61  HNMVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYF 120

Query: 430 VLNDIFHFVDEEPVHHYPALLLSQSNLDSTLNAPTTAPE-TVPNYSLNGAVQAPREFATP 489
           VL+D+F FVDE  V+++    LS+   ++ LN PT  P+  V +Y L    +   ++   
Sbjct: 121 VLSDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLE---EEASDYVNA 180

Query: 490 VVKENGHVDNCKFVEQQLQQVPEPKSIIEESTADVNSIHQNAPTVSPDPSPVSVEEHAEE 549
           V  ++  VD  K+  Q+ Q  P+ +   +E   +     + A  V  +     VEE   E
Sbjct: 181 VQIKDDLVD--KYSLQEDQHQPQHEDYEDEVAIEETPREEVAVDVVHEHRAAPVEEPVGE 240

Query: 550 PQKQTYASILRVAKGQDAPASIAASQYPVSKSTPSASEKNY---TP-PSTAQQLTTALQN 609
             K +YASIL+VAK + A   +AA+Q   +KS+   +E +    TP P  A  L    Q+
Sbjct: 241 KSKMSYASILKVAK-EAATVPVAATQPSYNKSSQDINEWDQPMRTPSPQLAAPLAPIQQS 300

Query: 610 NSEREQTGGEFPSVDDEG----EIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRS 669
           NS    +     + D  G    E KSVYVRNLPS +SASE+EEEFK+FG +  DGV +R+
Sbjct: 301 NSSTYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRT 360

Query: 670 RKDV-GFCYAFVEFEDVTGVQNAIKAGTAQVAGRQVYIEERRANSNVPHQGGRRGGRGRG 729
           RKDV G CYAFVEFED+T V+NAIKA    + GRQVYIEERR N        R GGRGRG
Sbjct: 361 RKDVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRG 420

Query: 730 SYHTESSRGHHSSSWSYNMGVRDGSDREYIRPRGNGFYR 759
            Y TE+ RG      S   G +DG D    RPRGNG+YR
Sbjct: 421 GYPTEAPRGRFGGRGS-GRGNQDGGD---YRPRGNGYYR 446

[Close]

BLAST of CmaCh06G012890 vs. TAIR 10
Match: AT5G43960.2 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain )

HSP 1 Score: 266.9 bits (681), Expect = 5.0e-71
Identity = 182/397 (45.84%), Postives = 239/397 (60.20%), Query Frame = 0


Query: 372 LVMSLSYTGVEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYFVL 431
           +VMSL++T +E+KT +S+ESW GGVLV+VSGSV+ K F+  R FVQTFFLAPQEKGYFVL
Sbjct: 1   MVMSLNFTAIEVKTINSVESWEGGVLVVVSGSVKTKEFSNRRSFVQTFFLAPQEKGYFVL 60

Query: 432 NDIFHFVDEEPVHHYPALLLSQSNLDSTLNAPTTAPE-TVPNYSLNGAVQAPREFATPVV 491
           +D+F FVDE  V+++    LS+   ++ LN PT  P+  V +Y L    +   ++   V 
Sbjct: 61  SDVFLFVDEGTVYYHQPSYLSEIKHEAQLNPPTRHPDPQVSDYVLE---EEASDYVNAVQ 120

Query: 492 KENGHVDNCKFVEQQLQQVPEPKSIIEESTADVNSIHQNAPTVSPDPSPVSVEEHAEEPQ 551
            ++  VD  K+  Q+ Q  P+ +   +E   +     + A  V  +     VEE   E  
Sbjct: 121 IKDDLVD--KYSLQEDQHQPQHEDYEDEVAIEETPREEVAVDVVHEHRAAPVEEPVGEKS 180

Query: 552 KQTYASILRVAKGQDAPASIAASQYPVSKSTPSASEKNY---TP-PSTAQQLTTALQNNS 611
           K +YASIL+VAK + A   +AA+Q   +KS+   +E +    TP P  A  L    Q+NS
Sbjct: 181 KMSYASILKVAK-EAATVPVAATQPSYNKSSQDINEWDQPMRTPSPQLAAPLAPIQQSNS 240

Query: 612 EREQTGGEFPSVDDEG----EIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRK 671
               +     + D  G    E KSVYVRNLPS +SASE+EEEFK+FG +  DGV +R+RK
Sbjct: 241 STYVSDYGAEAEDGSGFEDFEFKSVYVRNLPSDISASEIEEEFKNFGTIKPDGVFLRTRK 300

Query: 672 DV-GFCYAFVEFEDVTGVQNAIKAGTAQVAGRQVYIEERRANSNVPHQGGRRGGRGRGSY 731
           DV G CYAFVEFED+T V+NAIKA    + GRQVYIEERR N        R GGRGRG Y
Sbjct: 301 DVMGVCYAFVEFEDMTSVENAIKASPIYLGGRQVYIEERRPNPAGVRGARRGGGRGRGGY 360

Query: 732 HTESSRGHHSSSWSYNMGVRDGSDREYIRPRGNGFYR 759
            TE+ RG      S   G +DG D    RPRGNG+YR
Sbjct: 361 PTEAPRGRFGGRGS-GRGNQDGGD---YRPRGNGYYR 387

[Close]

BLAST of CmaCh06G012890 vs. TAIR 10
Match: AT1G60000.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 250.8 bits (639), Expect = 3.7e-66
Identity = 127/221 (57.47%), Postives = 171/221 (77.38%), Query Frame = 0


Query: 64  RPALGISAAVVQRKAAVTFGVEEGVADETAEEGEGQAVDGGSPVESGKTKLYFGNLPYSV 123
           +P L  S +  +R   ++  +   + +E  ++G    +D   P  +  TKLYFGNLPY+V
Sbjct: 40  KPLLISSRSCSRRFRVLSETITVKLEEEEKDDGASAVLD---PPAAVNTKLYFGNLPYNV 99

Query: 124 DSSQLADIVQDYGVAELIEVLYDRSTGKSRGFAFVTMSSIEDCNKVIENLDGTAYMGRLL 183
           DS+ LA I+QD+   EL+EVLY+R TG+SRGFAFVTMS++EDCN +I+NLDGT Y+GR L
Sbjct: 100 DSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRAL 159

Query: 184 RVNFSDKPKP-KGLLYPDSEYELYVSNLSWSVTSESLAQAFQEYGNVVGARVIYDDETGK 243
           +VNF+DKPKP K  LYP++E++L+V NLSW+VTSESLA AF+E G+VVGARV++D +TG+
Sbjct: 160 KVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGR 219

Query: 244 SRGYGFVSYSTKSEMETALEVCNELELEGRVIRVSLAKGKQ 284
           SRGYGFV YS+K+EMETALE  +  ELEGR IRV+LA+GK+
Sbjct: 220 SRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257

[Close]

BLAST of CmaCh06G012890 vs. TAIR 10
Match: AT5G60980.2 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain )

HSP 1 Score: 180.6 bits (457), Expect = 4.7e-45
Identity = 147/424 (34.67%), Postives = 210/424 (49.53%), Query Frame = 0


Query: 320 AAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRVD-GHFRESATAMLQIHALVMSLSY 379
           A  VG  FV QYY +L Q P  VH+FY D+S + R D      + T M  I+  ++SL Y
Sbjct: 12  AEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKY 71

Query: 380 TG--VEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYFVLNDIFH 439
                EI+TA + ES   GV+V+V+G +   N N  +KF Q+FFLAPQ+KGYFVLND+F 
Sbjct: 72  EDYTAEIETADAQESHERGVIVLVTGRL-TGNDNVRKKFSQSFFLAPQDKGYFVLNDVFR 131

Query: 440 FVDEEPVHHYPALLLSQSNLDSTLNAPTTAPETVPNYSLNGAVQAPREFATPVVKENGHV 499
           F++E+ V                    T    +VP       VQAP E    VV     V
Sbjct: 132 FLEEKEV--------------------TAQARSVPINGTTRDVQAPIEPERVVVSHEPEV 191

Query: 500 DNCKFVEQQLQQVPEPKSIIEESTADVNSIHQNAPTVSPDPSPVSVEEHAEEPQKQTYAS 559
           +            PEP + IEE   D++++ +       D   V   E  E P + ++  
Sbjct: 192 E------------PEPVASIEEE--DLDNVAEVYDPSDKDEGVVVDVEPIEPPTQISHNE 251

Query: 560 ILRVAKGQDAPASIAASQYPVSKSTPSAS---EKNYTPPSTAQQLTT------ALQNNSE 619
           IL V +G DAP    AS     KS+P+ +    +N   P+   Q  T      A +  + 
Sbjct: 252 ILSVPQG-DAPKHSYASILKQMKSSPAPTTHVARNKPRPAPVNQKLTAPPAEPAARPEAS 311

Query: 620 REQTGGEFPSVDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFC 679
             +       VD E +  S+YVRNLP   + +++EE FK+FG +  +G+ +RS K  GFC
Sbjct: 312 AHENVPNSSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQQGFC 371

Query: 680 YAFVEFEDVTGVQNAIKAGTAQVAGRQVYIEERRANSNVPHQGGRRGGR---GRGSYHTE 729
           + FVEFE  +G Q+A++A    +  RQ  +EE++ NS      G   GR   GRGS+  E
Sbjct: 372 FGFVEFETSSGKQSALEASPVTIGDRQAVVEEKKTNSRGGGNNGGSRGRYFSGRGSFRNE 399

[Close]

BLAST of CmaCh06G012890 vs. TAIR 10
Match: AT5G60980.1 (Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain )

HSP 1 Score: 176.8 bits (447), Expect = 6.8e-44
Identity = 147/424 (34.67%), Postives = 210/424 (49.53%), Query Frame = 0


Query: 320 AAQVGTYFVGQYYQVLQQQPDFVHQFYSDASTMLRVD-GHFRESATAMLQIHALVMSLSY 379
           A  VG  FV QYY +L Q P  VH+FY D+S + R D      + T M  I+  ++SL Y
Sbjct: 12  AEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAINDKILSLKY 71

Query: 380 TG--VEIKTAHSLESWNGGVLVMVSGSVQMKNFNQMRKFVQTFFLAPQEKGYFVLNDIFH 439
                EI+TA + ES   GV+V+V+G +   N N  +KF Q+FFLAPQ+KGYFVLND+F 
Sbjct: 72  EDYTAEIETADAQESHERGVIVLVTGRL-TGNDNVRKKFSQSFFLAPQDKGYFVLNDVFR 131

Query: 440 FVDEEPVHHYPALLLSQSNLDSTLNAPTTAPETVPNYSLNGAVQAPREFATPVVKENGHV 499
           F++E+ V                    T    +VP       VQAP E    VV     V
Sbjct: 132 FLEEKEV--------------------TAQARSVPINGTTRDVQAPIEPERVVVSHEPEV 191

Query: 500 DNCKFVEQQLQQVPEPKSIIEESTADVNSIHQNAPTVSPDPSPVSVEEHAEEPQKQTYAS 559
           +            PEP + IEE   D++++ +       D   V   E  E P + ++  
Sbjct: 192 E------------PEPVASIEEE--DLDNVAEVYDPSDKDEGVVVDVEPIEPPTQISHNE 251

Query: 560 ILRVAKGQDAPASIAASQYPVSKSTPSAS---EKNYTPPSTAQQLTT------ALQNNSE 619
           IL V +G DAP    AS     KS+P+ +    +N   P+   Q  T      A +  + 
Sbjct: 252 ILSVPQG-DAPKHSYASILKQMKSSPAPTTHVARNKPRPAPVNQKLTAPPAEPAARPEAS 311

Query: 620 REQTGGEFPSVDDEGEIKSVYVRNLPSTVSASEVEEEFKHFGKLSSDGVVIRSRKDVGFC 679
             +       VD E +  S+YVRNLP   + +++EE FK+FG +  +G+ +RS K  GFC
Sbjct: 312 AHENVPNSSHVDVEDDGHSIYVRNLPFDSTPTQLEEVFKNFGAIKHEGIQVRSNKQ-GFC 371

Query: 680 YAFVEFEDVTGVQNAIKAGTAQVAGRQVYIEERRANSNVPHQGGRRGGR---GRGSYHTE 729
           + FVEFE  +G Q+A++A    +  RQ  +EE++ NS      G   GR   GRGS+  E
Sbjct: 372 FGFVEFETSSGKQSALEASPVTIGDRQAVVEEKKTNSRGGGNNGGSRGRYFSGRGSFRNE 398

The following BLAST results are available for this feature:

BLAST of CmaCh06G012890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FME2	6.7e-44	34.67	Nuclear transport factor 2 OS=Arabidopsis thaliana OX=3702 GN=NTF2 PE=1 SV=1	[more]
P19684	3.2e-38	40.48	33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	1.0e-36	44.76	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
P19683	8.7e-36	39.15	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
Q08935	2.1e-34	41.33	29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 S...	[more]

BLAST of CmaCh06G012890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43960.1	4.0e-92	47.49	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP m...	[more]
AT5G43960.2	5.0e-71	45.84	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP m...	[more]
AT1G60000.1	3.7e-66	57.47	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G60980.2	4.7e-45	34.67	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP m...	[more]
AT5G60980.1	6.8e-44	34.67	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP m...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 204..277 e-value: 4.5E-25 score: 99.3 coord: 626..698 e-value: 8.2E-13 score: 58.6 coord: 113..186 e-value: 6.3E-21 score: 85.5
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 205..275 e-value: 5.1E-20 score: 71.1 coord: 627..694 e-value: 6.0E-9 score: 35.6 coord: 114..183 e-value: 1.6E-14 score: 53.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 112..190 score: 17.608734
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 203..281 score: 19.058443
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 625..702 score: 12.270393
IPR002075	Nuclear transport factor 2	PFAM	PF02136	NTF2	coord: 323..437 e-value: 1.5E-23 score: 83.6
None	No IPR available	GENE3D	3.10.450.50		coord: 316..441 e-value: 2.1E-32 score: 114.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 699..783
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 527..551
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 568..622
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 571..612
None	No IPR available	PANTHER	PTHR10693:SF58	OS02G0131700 PROTEIN	coord: 317..767
None	No IPR available	CDD	cd00590	RRM_SF	coord: 627..698 e-value: 3.30937E-12 score: 60.3965
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 76..193 e-value: 3.9E-23 score: 84.1
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 594..737 e-value: 1.6E-15 score: 59.3
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 194..289 e-value: 2.2E-26 score: 94.4
IPR039539	Ras GTPase-activating protein-binding protein	PANTHER	PTHR10693	RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN	coord: 317..767
IPR018222	Nuclear transport factor 2, eukaryote	PROSITE	PS50177	NTF2_DOMAIN	coord: 323..437 score: 25.602657
IPR018222	Nuclear transport factor 2, eukaryote	CDD	cd00780	NTF2	coord: 319..439 e-value: 2.30446E-35 score: 128.169
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 200..284
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 623..729
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 108..194
IPR032710	NTF2-like domain superfamily	SUPERFAMILY	54427	NTF2-like	coord: 319..438

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh06G012890.1	CmaCh06G012890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005829	cytosol
cellular_component	GO:0043229	intracellular organelle
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding