CmaCh06G012840 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh06G012840
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionBeta-amylase
LocationCma_Chr06: 8547072 .. 8547667 (-)
RNA-Seq ExpressionCmaCh06G012840
SyntenyCmaCh06G012840
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGCTTTCACGTACCTGAGAATGAATCCCCAGCTGTTTGAGGCTGATAATTGGAGGAGATTTGTGGCGTTTGTGAAGAAGATGAAGGAAGGGAAGAACCCAGATAAGTGTAGGGAGCAAATAGAGAGGGAAGCTGAGCATTTTGTTCATATCACTCAACCTCTGGTTCAAGAGGCTGCTGTTTCTCTCATGCATTGAAGAAGGTTGGTTATTATACTGTTGTTGTTGTTGTATACTCTCCATAGTCGATGAATAAATGGGTGGAAGAAGGTTGGTTATTATACTGTTGTTGTTGTTGTATACTCTCCATAGTCGATGAATAAATGGGTGTCTGGTGTTCTTCTGTGTTCTTCCTCTGCTCTGTGTTTTCTTCTGTAGCTCTCTGGTTTTTAATGTGATGTAGCTATGGAAGATTGGAAATCTGTGTAATTTCTATCCCTTTCTGAATGCTGGTTTTTAATGTGATGTAGCTATGGAAGATTGGAAATCTGTGTAATTTCTATCCCTTTCTGAATGAATGGGAAATTTGTTGTAATACTTGGAAAGAATACACTTCGCATTTTAATATAAATGCTACTTTAGCTGAGCAGTGA

mRNA sequence

ATGTGTGCTTTCACGTACCTGAGAATGAATCCCCAGCTGTTTGAGGCTGATAATTGGAGGAGATTTGTGGCGTTTGTGAAGAAGATGAAGGAAGGGAAGAACCCAGATAAGTGTAGGGAGCAAATAGAGAGGGAAGCTGAGCATTTTGTTCATATCACTCAACCTCTGGTTCAAGAGGCTGCTCTATGGAAGATTGGAAATCTGTGTAATTTCTATCCCTTTCTGAATGAATGGGAAATTTGTTGTAATACTTGGAAAGAATACACTTCGCATTTTAATATAAATGCTACTTTAGCTGAGCAGTGA

Coding sequence (CDS)

ATGTGTGCTTTCACGTACCTGAGAATGAATCCCCAGCTGTTTGAGGCTGATAATTGGAGGAGATTTGTGGCGTTTGTGAAGAAGATGAAGGAAGGGAAGAACCCAGATAAGTGTAGGGAGCAAATAGAGAGGGAAGCTGAGCATTTTGTTCATATCACTCAACCTCTGGTTCAAGAGGCTGCTCTATGGAAGATTGGAAATCTGTGTAATTTCTATCCCTTTCTGAATGAATGGGAAATTTGTTGTAATACTTGGAAAGAATACACTTCGCATTTTAATATAAATGCTACTTTAGCTGAGCAGTGA

Protein sequence

MCAFTYLRMNPQLFEADNWRRFVAFVKKMKEGKNPDKCREQIEREAEHFVHITQPLVQEAALWKIGNLCNFYPFLNEWEICCNTWKEYTSHFNINATLAEQ
Homology
[Close]
BLAST of CmaCh06G012840 vs. ExPASy Swiss-Prot
Match: Q9LIR6 (Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 8.4e-24
Identity = 48/62 (77.42%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MCAFTYLRMNPQLFEADNWRRFVAFVKKMKEGKNPDKCREQIEREAEHFVHITQPLVQEA 60
           MCAFTYLRMNP+LF+ADNW +FVAFVKKM EG++  +CRE++EREAEHFVH+TQPLVQEA
Sbjct: 510 MCAFTYLRMNPELFQADNWGKFVAFVKKMGEGRDSHRCREEVEREAEHFVHVTQPLVQEA 569

Query: 61  AL 63
           A+
Sbjct: 570 AV 571

[Close]
BLAST of CmaCh06G012840 vs. ExPASy Swiss-Prot
Match: Q10RZ1 (Beta-amylase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BAMY2 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-15
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 0 

Query: 1   MCAFTYLRMNPQLFEADNWRRFVAFVKKMKEGKNPDKCREQIEREAEHFVHITQPLVQEA 60
           M AFTYLRM P LF+ DNWRRF AFVK+M E    D CREQ+EREA+   H T  LV EA
Sbjct: 492 MVAFTYLRMGPDLFQPDNWRRFAAFVKRMTESGVRDVCREQVEREAQGVAHATGSLVHEA 551

Query: 61  AL 63
           A+
Sbjct: 552 AV 553

[Close]
BLAST of CmaCh06G012840 vs. ExPASy Swiss-Prot
Match: Q9AV88 (Beta-amylase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BAMY1 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-09
Identity = 34/62 (54.84%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 1   MCAFTYLRMNPQLFEADNWRRFVAFVKKMKEGKNPDKCREQIEREAEHFVHITQPLVQEA 60
           M AFTYLRM P LF  DNWRRFVAFV++M E  +P   RE  E  A      T  LV EA
Sbjct: 473 MVAFTYLRMGPDLFHPDNWRRFVAFVRRMSESGSP---REAAESAAHGVAQATGSLVHEA 531

Query: 61  AL 63
           A+
Sbjct: 533 AV 531

[Close]
BLAST of CmaCh06G012840 vs. ExPASy Swiss-Prot
Match: O23553 (Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-05
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 1   MCAFTYLRMNPQLFEADNWRRFVAFVKKMKEGKNPDKCREQIEREAEHFVHITQ----PL 60
           + AFTYLRMN +LFE  NW++ V FVK MKEG +  +  ++    ++ +V   +      
Sbjct: 482 LTAFTYLRMNKRLFEGQNWQQLVEFVKNMKEGGHGRRLSKEDTTGSDLYVGFVKGKIAEN 541

Query: 61  VQEAAL 63
           V+EAAL
Sbjct: 542 VEEAAL 547

[Close]
BLAST of CmaCh06G012840 vs. TAIR 10
Match: AT3G23920.1 (beta-amylase 1 )

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-25
Identity = 48/62 (77.42%), Postives = 58/62 (93.55%), Query Frame = 0 

Query: 1   MCAFTYLRMNPQLFEADNWRRFVAFVKKMKEGKNPDKCREQIEREAEHFVHITQPLVQEA 60
           MCAFTYLRMNP+LF+ADNW +FVAFVKKM EG++  +CRE++EREAEHFVH+TQPLVQEA
Sbjct: 510 MCAFTYLRMNPELFQADNWGKFVAFVKKMGEGRDSHRCREEVEREAEHFVHVTQPLVQEA 569

Query: 61  AL 63
           A+
Sbjct: 570 AV 571

[Close]
BLAST of CmaCh06G012840 vs. TAIR 10
Match: AT4G17090.1 (chloroplast beta-amylase )

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 27/66 (40.91%), Postives = 40/66 (60.61%), Query Frame = 0 

Query: 1   MCAFTYLRMNPQLFEADNWRRFVAFVKKMKEGKNPDKCREQIEREAEHFVHITQ----PL 60
           + AFTYLRMN +LFE  NW++ V FVK MKEG +  +  ++    ++ +V   +      
Sbjct: 482 LTAFTYLRMNKRLFEGQNWQQLVEFVKNMKEGGHGRRLSKEDTTGSDLYVGFVKGKIAEN 541

Query: 61  VQEAAL 63
           V+EAAL
Sbjct: 542 VEEAAL 547

The following BLAST results are available for this feature:
BLAST of CmaCh06G012840 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LIR68.4e-2477.42Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BAM1 PE=1 SV=1[more]
Q10RZ15.4e-1562.90Beta-amylase 2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BAMY2 ... [more]
Q9AV881.2e-0954.84Beta-amylase 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=BAMY1 ... [more]
O235532.3e-0540.91Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=BAM3 PE=1 SV=3[more]
BLAST of CmaCh06G012840 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G23920.15.9e-2577.42beta-amylase 1 [more]
AT4G17090.11.6e-0640.91chloroplast beta-amylase [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.20.20.80Glycosidasescoord: 1..84
e-value: 3.9E-10
score: 40.7
NoneNo IPR availablePANTHERPTHR31352:SF38BETA-AMYLASE 1, CHLOROPLASTICcoord: 1..62
IPR001554Glycoside hydrolase, family 14PANTHERPTHR31352FAMILY NOT NAMEDcoord: 1..62
IPR017853Glycoside hydrolase superfamilySUPERFAMILY51445(Trans)glycosidasescoord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh06G012840.1CmaCh06G012840.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009414 response to water deprivation
biological_process GO:0005983 starch catabolic process
biological_process GO:0000272 polysaccharide catabolic process
molecular_function GO:0102229 amylopectin maltohydrolase activity
molecular_function GO:0016161 beta-amylase activity